Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001782

Physical Location & Seq

Genomic Coordinates Reverse (-)

5696917 .. 5697562

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1048300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTCACCCATGAGACTGGCCATTGAAGAGATAAATCGTGGCACCTACTGCGATACCACAAGTACTGACTATCCGTGCAACCCCTACGGTCGCGGACCACTCCAACTAACATGGAATTACAACTATGGAGCAGCCGGAAACAGCATTGGTTTTGACCGCTTAAACTCCCCGGAAACCGTGGCCTCAGACCCCGTTGTTGCATTTAAGACTGCCTTGTGGTTTTGGATGAACAATGTCCGTCCAGTTCTAAGTCAAGGATTTGGTGCCACCATTCGAGCCATTAACGGCGAGGTTGAATGTGATGGGAAATTACCTGATGCAGTTCAAGCTCGCACCAACTATTACAAAGATTACTGCAACCAACTTAATGTTAATCCTGGCGGCAATCTCTATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Chitin_bind_1 Glyco_hydro_19

Protein Analysis

133

Amino Acids

14.66

Weight (kDa)

4.95

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_19	PF00182	11 - 80	1.2e-22	Chitinase class I
Glyco_hydro_19	PF00182	85 - 132	6.1e-08	Chitinase class I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43580 AT2G43590 AT3G47540 AT3G47540
fragaria_vesca	FvH4_2g31570 FvH4_4g10600 FvH4_4g10610
malus_domestica	MD04G1047700.v1.1 MD04G1048300.v1.1
prunus_persica	Prupe.1G080300_v2.0.a1 Prupe.1G080700_v2.0.a1 Prupe.1G080800_v2.0.a1 Prupe.1G205400_v2.0.a1 Prupe.1G205600_v2.0.a1
pyrus_communis	pycom04g04170 pycom04g04260
rosa_chinensis	RchiOBHm_Chr4g0406221 RchiOBHm_Chr4g0406231 RchiOBHm_Chr5g0013691 RchiOBHm_Chr6g0255151
rosa_laevigata	RLG00000008787 RLG00000008788 RLG00000032041
rosa_multiflora	Rmu_sc0002573.1_g000002 Rmu_sc0008653.1_g000006 Rmu_sc0008653.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062910 Rroxscaffold_5G00350940 Rroxscaffold_5G00350960
rosa_rugosa	Rorug04G0065900 Rorug04G0066600 Rorug05G0012300 Rorug05G0012400
rosa_samantha	Rh4AG136400 Rh4AG136500 Rh4BG133800 Rh4BG133900 Rh4CG144600 Rh4CG144700 Rh4DG131300 Rh5AG106700 Rh5BG102800 Rh5CG114700 Rh5DG101500
rosa_wichuraiana	Rw4G011190 Rw4G011200 Rw5G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	41, 263
AccII	CGCG	1 cut(s)	93
AciI	CCGC	3 cut(s)	93, 157, 381
AcoI	YGGCCR	1 cut(s)	18
AfaI	GTAC	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	26, 296, 326
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	7
AoxI	GGCC	2 cut(s)	18, 180
ApeKI	GCWGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	20
BanI	GGYRCC	2 cut(s)	41, 263
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	7
BisI	GCNGC	2 cut(s)	132, 382
BlsI	GCNGC	2 cut(s)	133, 383
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	170, 378
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	2 cut(s)	43, 265
BmrFI	CCNGG	2 cut(s)	170, 378
BmsI	GCATC	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	168, 177
Bse1I	ACTGG	2 cut(s)	21, 242
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	168, 177
BseGI	GGATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	21, 242
BseXI	GCAGC	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	20, 182
BshNI	GGYRCC	2 cut(s)	41, 263
BsiEI	CGRYCG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	135, 170
BsmAI	GTCTC	1 cut(s)	7
BsnI	GGCC	2 cut(s)	20, 182
BspACI	CCGC	3 cut(s)	93, 157, 381
BspANI	GGCC	2 cut(s)	20, 182
BspCNI	CTCAG	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	43, 265
BspT107I	GGYRCC	2 cut(s)	41, 263
BsrI	ACTGG	2 cut(s)	21, 242
BssECI	CCNNGG	2 cut(s)	168, 177
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	89, 178
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	184, 248
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	7
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 326
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	168, 376
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	143
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	20, 182
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	2 cut(s)	10, 111
CviJI	RGCY	5 cut(s)	20, 134, 182, 278, 329
CviKI_1	RGCY	5 cut(s)	20, 134, 182, 278, 329
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	2 cut(s)	184, 248
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	376
FaeI	CATG	2 cut(s)	13, 114
FaiI	YATR	3 cut(s)	11, 112, 126
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	2 cut(s)	9, 110
Fnu4HI	GCNGC	2 cut(s)	132, 382
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	132, 382
GluI	GCNGC	2 cut(s)	132, 382
HaeIII	GGCC	2 cut(s)	20, 182
HapII	CCGG	2 cut(s)	135, 170
Hin1II	CATG	2 cut(s)	13, 114
HpaII	CCGG	2 cut(s)	135, 170
Hpy188I	TCNGA	1 cut(s)	187
HpyCH4III	ACNGT	2 cut(s)	89, 178
HpyCH4V	TGCA	4 cut(s)	78, 200, 320, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 326
HpyF3I	CTNAG	2 cut(s)	184, 248
Hsp92II	CATG	2 cut(s)	13, 114
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	7 cut(s)	2, 148, 183, 255, 327, 363, 390
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	2 cut(s)	115, 308
MluNI	TGGCCA	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	2 cut(s)	193, 283
Mox20I	TGGCCA	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	5 cut(s)	161, 204, 282, 366, 372
Msp20I	TGGCCA	1 cut(s)	20
MspI	CCGG	2 cut(s)	135, 170
MspR9I	CCNGG	2 cut(s)	170, 378
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	48, 326
NciI	CCSGG	1 cut(s)	170
NlaIII	CATG	2 cut(s)	13, 114
NlaIV	GGNNCC	2 cut(s)	43, 265
NmuCI	GTSAC	1 cut(s)	3
PkrI	GCNGC	2 cut(s)	133, 383
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	43, 265
PspPI	GGNCC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	5 cut(s)	161, 204, 282, 366, 372
SatI	GCNGC	2 cut(s)	132, 382
Sau96I	GGNCC	1 cut(s)	95
ScaI	AGTACT	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	170, 378
SetI	ASST	4 cut(s)	47, 294, 316, 331
SfaNI	GCATC	1 cut(s)	307
SinI	GGWCC	1 cut(s)	95
Sse9I	AATT	2 cut(s)	115, 308
SsiI	CCGC	3 cut(s)	93, 157, 381
StyD4I	CCNGG	2 cut(s)	168, 376
TaaI	ACNGT	2 cut(s)	89, 178
TaqI	TCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	115, 308
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	1 cut(s)	384
Tru1I	TTAA	5 cut(s)	161, 204, 282, 366, 372
Tru9I	TTAA	5 cut(s)	161, 204, 282, 366, 372
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	242
TspGWI	ACGGA	2 cut(s)	63, 227
VpaK11BI	GGWCC	1 cut(s)	95
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.