AT2G45100

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
18595178 .. 18598481
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45100.1

Sequence Viewer

Length: 1674 bp
ATGGTGTGGTGTAAACATTGTGGGAAGAACGTTCCCGGAATACGCCCCTATGATGCTGCATTGTCATGTGATTTATGTGGCAGGATTTTGGAGAATTTCAATTTTTCTACTGAAGTTACATTCGTTAAGAATGCTGCTGGACAGAGCCAAGCTTCTGGTAACATACTCAAGAGTGTTCAGAGTGGCATGTCAAGCTCACGTGAAAGGATAATCAGAAAAGCTACTGATGAGCTTATGAATTTGAGAGATGCTTTGGGAATTGGTGATGACAGAGATGATGTTATTGTCATGGCTTCTAATTTCTTTAGAATTGCACTTGATCATAATTTCACTAAAGGCCGTAGCAAAGAACTAGTATTCTCTTCATGTCTCTACTTGACTTGCAGGCAATTCAAATTGGCGGTTCTTCTTATTGATTTTTCAAGCTACCTTCGTGTTAGCGTTTACGATTTAGGTTCTGTGTATTTGCAACTCTGTGACATGCTCTACATTACAGAAAACCACAACTATGAGAAACTTGTTGATCCTTCAATTTTCATTCCTCGATTCTCAAACATGTTATTGAAAGGTGCACACAATAATAAACTCGTGCTAACGGCTACACACATTATAGCTAGTATGAAGAGAGATTGGATGCAGACCGGACGGAAACCAAGTGGAATATGTGGAGCAGCACTCTATACAGCTGCACTTTCTCATGGTATCAAGTGCTCCAAGACAGATATCGTGAACATTGTGCATATATGCGAAGCAACCCTAACTAAAAGATTGATTGAGTTTGGAGATACCGAGGCTGCAAGTTTGACTGCAGATGAGCTCAGTAAAACTGAAAGAGAAAAAGAAACGGCTGCATTGCGAAGTAAAAGGAAGCCAAATTTTTACAAAGAAGGAGTAGTGCTCTGTATGCATCAAGATTGTAAACCTGTTGATTATGGATTATGTGAGAGCTGTTACGATGAATTCATGACAGTTTCTGGTGGACTTGAAGGTGGGTCGGATCCTCCCGCCTTCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAGCTTCTAGTGAAGAAAACGACAAACAAGTAAATTTGGATGGACATTCGGATGAATCAAGCACCTTGTCTGACGTCGATGATAGAGAGTTGGATTGTTATTTTCGGACGCCAGAAGAAGTGCGCCTGGTTAAGATCTTCTTTGATCACGAAAACCCCGGATATGATGAGAAGGAAGCAGCTAAGAAAGCAGCAGGTTTAAATGCTTGCAATAATGCAAGCAACATTTTCGAAGCTTCTAAAGCAGCTGCGGCGAAATCTAGAAAAGAAAAACGACAACAACGCGCTGAGGAAGAAAAGAACGCTCCTCCTCCAGCTACAGGCATAGAAGCTGTTGATAGCATGGTCAAGAGAAAGAAATTTCGCGATATTAACTGCGATTATTTGGAGGAGCTTTTTGATGCGTCAGTTGAGAAATCACCCAAGAGATCGAAAACCGAGACAGTGATGGAGAAGAAGAAGAAGGAAGAGCATGAGATTGTTGAAAACGAACAAGAGGAAGAAGACTACGCGGCACCATACGAACAAGATGAAGAAGACTACGCGGCACCATACGAGATGAACACAGATAAGAAATTCTATGAAAGCGAAGTAGAAGAGGAAGAGGATGGTTACGATTTTGGATTGTATTAA

Protein Analysis

557

Amino Acids

62.95

Weight (kDa)

5.07

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIB PF00382 72 - 158 8.3e-13 Transcription factor TFIIB repeat
TFIIB PF00382 172 - 260 2.5e-15 Transcription factor TFIIB repeat
BRF1 PF07741 371 - 481 1.7e-19 Brf1-like TBP-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1119
Acc36I ACCTGC 1 cut(s) 1226
AccB1I GGYRCC 2 cut(s) 1555, 1588
AccII CGCG 4 cut(s) 1326, 1407, 1553, 1586
AciI CCGC 5 cut(s) 401, 1005, 1292, 1553, 1586
AclI AACGTT 1 cut(s) 30
AclWI GGATC 3 cut(s) 518, 992, 1005
AcsI RAATTY 7 cut(s) 94, 238, 874, 959, 1075, 1400, 1616
AcuI CTGAAG 1 cut(s) 132
AcvI CACGTG 1 cut(s) 200
AcyI GRCGYC 2 cut(s) 1116, 1151
AfiI CCNNNNNNNGG 1 cut(s) 1361
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 7 cut(s) 100, 394, 423, 531, 565, 986, 1526
AhlI ACTAGT 1 cut(s) 352
AjnI CCWGG 1 cut(s) 1167
Alw21I GWGCWC 4 cut(s) 574, 713, 819, 900
Alw26I GTCTC 2 cut(s) 374, 1475
Alw44I GTGCAC 1 cut(s) 570
AlwI GGATC 3 cut(s) 518, 992, 1005
AlwNI CAGNNNCTG 1 cut(s) 974
AoxI GGCC 1 cut(s) 337
ApaLI GTGCAC 1 cut(s) 570
ApoI RAATTY 7 cut(s) 94, 238, 874, 959, 1075, 1400, 1616
AspLEI GCGC 2 cut(s) 1167, 1328
AsuC2I CCSGG 2 cut(s) 36, 1200
AsuHPI GGTGA 2 cut(s) 275, 1452
AsuII TTCGAA 1 cut(s) 1272
BaeGI GKGCMC 1 cut(s) 574
BamHI GGATCC 1 cut(s) 997
BanI GGYRCC 2 cut(s) 1555, 1588
BanII GRGCYC 1 cut(s) 819
BauI CACGAG 1 cut(s) 587
BbrPI CACGTG 1 cut(s) 200
BbsI GAAGAC 2 cut(s) 1551, 1584
Bbv12I GWGCWC 4 cut(s) 574, 713, 819, 900
BbvCI CCTCAGC 1 cut(s) 1329
BccI CCATC 3 cut(s) 1076, 1483, 1643
BceAI ACGGC 3 cut(s) 324, 612, 861
BcgI CGANNNNNNTGC 2 cut(s) 1252, 1286
BciT130I CCWGG 1 cut(s) 1169
BclI TGATCA 2 cut(s) 319, 1186
BcnI CCSGG 2 cut(s) 36, 1200
BcoDI GTCTC 2 cut(s) 374, 1475
BcuI ACTAGT 1 cut(s) 352
BfaI CTAG 4 cut(s) 353, 615, 1050, 1302
BfmI CTRYAG 2 cut(s) 807, 1359
BfuAI ACCTGC 1 cut(s) 1226
BglII AGATCT 1 cut(s) 1176
Bme1390I CCNGG 3 cut(s) 36, 1169, 1200
BmiI GGNNCC 3 cut(s) 999, 1557, 1590
BmrFI CCNGG 3 cut(s) 36, 1169, 1200
BmsI GCATC 5 cut(s) 43, 238, 624, 916, 1432
BpiI GAAGAC 2 cut(s) 1551, 1584
BplI GAGNNNNNCTC 4 cut(s) 660, 692, 882, 914
BpmI CTGGAG 1 cut(s) 1338
Bpu10I CCTNAGC 1 cut(s) 1329
Bpu14I TTCGAA 1 cut(s) 1272
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 2 cut(s) 36, 1200
BsaAI YACGTR 1 cut(s) 200
BsaHI GRCGYC 2 cut(s) 1116, 1151
BsaJI CCNNGG 2 cut(s) 789, 1198
BsaWI WCCGGW 1 cut(s) 641
Bsc4I CCNNNNNNNGG 1 cut(s) 1361
Bse3DI GCAATG 1 cut(s) 851
BseBI CCWGG 1 cut(s) 1169
BseDI CCNNGG 2 cut(s) 789, 1198
BseGI GGATG 4 cut(s) 639, 1087, 1099, 1654
BseLI CCNNNNNNNGG 1 cut(s) 1361
BseMI GCAATG 1 cut(s) 851
BseMII CTCAG 2 cut(s) 832, 1320
BseRI GAGGAG 3 cut(s) 1338, 1341, 1445
BseSI GKGCMC 1 cut(s) 574
BsgI GTGCAG 1 cut(s) 672
Bsh1236I CGCG 4 cut(s) 1326, 1407, 1553, 1586
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 2 cut(s) 1555, 1588
BsiHKAI GWGCWC 4 cut(s) 574, 713, 819, 900
BsiSI CCGG 3 cut(s) 36, 642, 1200
BslI CCNNNNNNNGG 1 cut(s) 1361
BsmAI GTCTC 2 cut(s) 374, 1475
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 1 cut(s) 339
Bsp119I TTCGAA 1 cut(s) 1272
Bsp1286I GDGCHC 4 cut(s) 574, 713, 819, 900
Bsp143I GATC 6 cut(s) 319, 523, 997, 1176, 1186, 1469
Bsp68I TCGCGA 1 cut(s) 1407
BspACI CCGC 5 cut(s) 401, 1005, 1292, 1553, 1586
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 2 cut(s) 831, 1321
BspFNI CGCG 4 cut(s) 1326, 1407, 1553, 1586
BspHI TCATGA 1 cut(s) 963
BspLI GGNNCC 3 cut(s) 999, 1557, 1590
BspMAI CTGCAG 1 cut(s) 811
BspMI ACCTGC 1 cut(s) 1226
BspPI GGATC 3 cut(s) 518, 992, 1005
BspQI GCTCTTC 1 cut(s) 1503
BspT104I TTCGAA 1 cut(s) 1272
BspT107I GGYRCC 2 cut(s) 1555, 1588
BsrDI GCAATG 1 cut(s) 851
BssECI CCNNGG 2 cut(s) 789, 1198
BssMI GATC 6 cut(s) 319, 523, 997, 1176, 1186, 1469
BssNI GRCGYC 2 cut(s) 1116, 1151
BssSI CACGAG 1 cut(s) 587
Bst2BI CACGAG 1 cut(s) 587
Bst2UI CCWGG 1 cut(s) 1169
Bst4CI ACNGT 2 cut(s) 970, 1486
Bst6I CTCTTC 5 cut(s) 367, 617, 1503, 1632, 1638
BstACI GRCGYC 2 cut(s) 1116, 1151
BstBAI YACGTR 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 1272
BstC8I GCNNGC 4 cut(s) 386, 1017, 1249, 1261
BstDEI CTNAG 3 cut(s) 818, 1224, 1329
BstF5I GGATG 4 cut(s) 639, 1087, 1099, 1654
BstFNI CGCG 4 cut(s) 1326, 1407, 1553, 1586
BstHHI GCGC 2 cut(s) 1167, 1328
BstKTI GATC 6 cut(s) 322, 526, 1000, 1179, 1189, 1472
BstMAI GTCTC 2 cut(s) 374, 1475
BstMBI GATC 6 cut(s) 319, 523, 997, 1176, 1186, 1469
BstMWI GCNNNNNNNGC 5 cut(s) 192, 904, 1229, 1283, 1292
BstNI CCWGG 1 cut(s) 1169
BstNSI RCATGY 3 cut(s) 190, 484, 559
BstSCI CCNGG 3 cut(s) 34, 1167, 1198
BstSFI CTRYAG 2 cut(s) 807, 1359
BstSLI GKGCMC 1 cut(s) 574
BstUI CGCG 4 cut(s) 1326, 1407, 1553, 1586
BstV2I GAAGAC 2 cut(s) 1551, 1584
BstX2I RGATCY 2 cut(s) 997, 1176
BstXI CCANNNNNNTGG 1 cut(s) 155
BstYI RGATCY 2 cut(s) 997, 1176
BsuRI GGCC 1 cut(s) 339
BtsCI GGATG 4 cut(s) 639, 1087, 1099, 1654
BtsIMutI CAGTG 1 cut(s) 1491
BtuMI TCGCGA 1 cut(s) 1407
BveI ACCTGC 1 cut(s) 1226
Cac8I GCNNGC 4 cut(s) 386, 1017, 1249, 1261
CaiI CAGNNNCTG 1 cut(s) 974
CciI TCATGA 1 cut(s) 963
CfoI GCGC 2 cut(s) 1167, 1328
CseI GACGC 2 cut(s) 1159, 1434
DdeI CTNAG 3 cut(s) 818, 1224, 1329
DpnI GATC 6 cut(s) 321, 525, 999, 1178, 1188, 1471
DpnII GATC 6 cut(s) 319, 523, 997, 1176, 1186, 1469
DraI TTTAAA 1 cut(s) 1242
Eam1104I CTCTTC 5 cut(s) 367, 617, 1503, 1632, 1638
EarI CTCTTC 5 cut(s) 367, 617, 1503, 1632, 1638
Ecl136II GAGCTC 1 cut(s) 817
Eco24I GRGCYC 1 cut(s) 819
Eco32I GATATC 1 cut(s) 724
Eco53kI GAGCTC 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 817
EcoRI GAATTC 1 cut(s) 959
EcoRII CCWGG 1 cut(s) 1167
EcoRV GATATC 1 cut(s) 724
EcoT22I ATGCAT 1 cut(s) 909
EcoT38I GRGCYC 1 cut(s) 819
FalI AAGNNNNNCTT 2 cut(s) 1166, 1198
FauI CCCGC 1 cut(s) 1012
FbaI TGATCA 2 cut(s) 319, 1186
FokI GGATG 4 cut(s) 646, 1094, 1106, 1661
FriOI GRGCYC 1 cut(s) 819
FspBI CTAG 4 cut(s) 353, 615, 1050, 1302
GlaI GCGC 2 cut(s) 1166, 1327
GsuI CTGGAG 1 cut(s) 1338
HaeIII GGCC 1 cut(s) 339
HapII CCGG 3 cut(s) 36, 642, 1200
HgaI GACGC 2 cut(s) 1159, 1434
HhaI GCGC 2 cut(s) 1167, 1328
Hin1I GRCGYC 2 cut(s) 1116, 1151
Hin6I GCGC 2 cut(s) 1165, 1326
HinP1I GCGC 2 cut(s) 1165, 1326
HindIII AAGCTT 3 cut(s) 150, 1044, 1275
HinfI GANTC 2 cut(s) 546, 1097
HpaII CCGG 3 cut(s) 36, 642, 1200
HphI GGTGA 2 cut(s) 275, 1452
Hpy166II GTNNAC 6 cut(s) 14, 445, 572, 730, 920, 980
Hpy188I TCNGA 6 cut(s) 180, 215, 997, 1093, 1114, 1149
Hpy188III TCNNGA 8 cut(s) 169, 727, 911, 964, 1190, 1302, 1390, 1406
Hpy8I GTNNAC 6 cut(s) 14, 445, 572, 730, 920, 980
Hpy99I CGWCG 1 cut(s) 1121
HpyAV CCTTC 7 cut(s) 440, 537, 881, 980, 1018, 1207, 1498
HpyCH4III ACNGT 2 cut(s) 970, 1486
HpyCH4IV ACGT 3 cut(s) 30, 199, 1116
HpyF10VI GCNNNNNNNGC 5 cut(s) 192, 904, 1229, 1283, 1292
HpyF3I CTNAG 3 cut(s) 818, 1224, 1329
HpySE526I ACGT 3 cut(s) 30, 199, 1116
Hsp92I GRCGYC 2 cut(s) 1116, 1151
HspAI GCGC 2 cut(s) 1165, 1326
Ksp22I TGATCA 2 cut(s) 319, 1186
Kzo9I GATC 6 cut(s) 319, 523, 997, 1176, 1186, 1469
LguI GCTCTTC 1 cut(s) 1503
LmnI GCTCC 4 cut(s) 668, 716, 1351, 1432
LweI GCATC 5 cut(s) 43, 238, 624, 916, 1432
MaeI CTAG 4 cut(s) 353, 615, 1050, 1302
MaeII ACGT 3 cut(s) 30, 199, 1116
MaeIII GTNAC 5 cut(s) 115, 158, 476, 950, 1652
MalI GATC 6 cut(s) 321, 525, 999, 1178, 1188, 1471
MboI GATC 6 cut(s) 319, 523, 997, 1176, 1186, 1469
MflI RGATCY 2 cut(s) 997, 1176
MhlI GDGCHC 4 cut(s) 574, 713, 819, 900
MmeI TCCRAC 2 cut(s) 975, 1113
Mph1103I ATGCAT 1 cut(s) 909
MseI TTAA 5 cut(s) 126, 1173, 1241, 1413, 1672
MslI CAYNNNNRTG 3 cut(s) 64, 507, 1092
MspA1I CMGCKG 2 cut(s) 686, 1289
MspI CCGG 3 cut(s) 36, 642, 1200
MspR9I CCNGG 3 cut(s) 36, 1169, 1200
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 1 cut(s) 1169
MvnI CGCG 4 cut(s) 1326, 1407, 1553, 1586
MwoI GCNNNNNNNGC 5 cut(s) 192, 904, 1229, 1283, 1292
NciI CCSGG 2 cut(s) 36, 1200
NdeII GATC 6 cut(s) 319, 523, 997, 1176, 1186, 1469
NlaIV GGNNCC 3 cut(s) 999, 1557, 1590
NmuCI GTSAC 1 cut(s) 476
NruI TCGCGA 1 cut(s) 1407
NsiI ATGCAT 1 cut(s) 909
NspI RCATGY 3 cut(s) 190, 484, 559
NspV TTCGAA 1 cut(s) 1272
PagI TCATGA 1 cut(s) 963
PciI ACATGT 1 cut(s) 555
PciSI GCTCTTC 1 cut(s) 1503
PctI GAATGC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 546, 1097
PfoI TCCNGGA 1 cut(s) 34
PmaCI CACGTG 1 cut(s) 200
PmlI CACGTG 1 cut(s) 200
Ppu21I YACGTR 1 cut(s) 200
PscI ACATGT 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 819
Psp1406I AACGTT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 1167
PspCI CACGTG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 1167
PspN4I GGNNCC 3 cut(s) 999, 1557, 1590
PstI CTGCAG 1 cut(s) 811
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 2 cut(s) 997, 1176
PvuII CAGCTG 2 cut(s) 686, 1289
RruI TCGCGA 1 cut(s) 1407
RseI CAYNNNNRTG 3 cut(s) 64, 507, 1092
SacI GAGCTC 1 cut(s) 819
SapI GCTCTTC 1 cut(s) 1503
SaqAI TTAA 5 cut(s) 126, 1173, 1241, 1413, 1672
Sau3AI GATC 6 cut(s) 319, 523, 997, 1176, 1186, 1469
ScrFI CCNGG 3 cut(s) 36, 1169, 1200
SduI GDGCHC 4 cut(s) 574, 713, 819, 900
SfaNI GCATC 5 cut(s) 43, 238, 624, 916, 1432
SfcI CTRYAG 2 cut(s) 807, 1359
SfuI TTCGAA 1 cut(s) 1272
SmiMI CAYNNNNRTG 3 cut(s) 64, 507, 1092
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SpeI ACTAGT 1 cut(s) 352
SsiI CCGC 5 cut(s) 401, 1005, 1292, 1553, 1586
SspMI CTAG 4 cut(s) 353, 615, 1050, 1302
SstI GAGCTC 1 cut(s) 819
StyD4I CCNGG 3 cut(s) 34, 1167, 1198
TaaI ACNGT 2 cut(s) 970, 1486
TaiI ACGT 3 cut(s) 33, 202, 1119
TaqI TCGA 4 cut(s) 544, 1119, 1272, 1472
TauI GCSGC 3 cut(s) 1295, 1556, 1589
TfiI GAWTC 2 cut(s) 546, 1097
Tru1I TTAA 5 cut(s) 126, 1173, 1241, 1413, 1672
Tru9I TTAA 5 cut(s) 126, 1173, 1241, 1413, 1672
TscAI CASTG 1 cut(s) 1491
TseFI GTSAC 1 cut(s) 476
Tsp45I GTSAC 1 cut(s) 476
TspGWI ACGGA 1 cut(s) 661
TspRI CASTG 1 cut(s) 1491
VneI GTGCAC 1 cut(s) 570
XapI RAATTY 7 cut(s) 94, 238, 874, 959, 1075, 1400, 1616
XbaI TCTAGA 1 cut(s) 1301
XceI RCATGY 3 cut(s) 190, 484, 559
XspI CTAG 4 cut(s) 353, 615, 1050, 1302
ZraI GACGTC 1 cut(s) 1117
Zsp2I ATGCAT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.