Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00479

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Forward (+)

36216 .. 48246

Gene Structure 12031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G011060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGGTGTTCTGTAACAATTGTGGGAAAAGCGTCCCTGGAACAGAAGATAGTGGTAGAATATGGTGTGACTTATGCGGCAAGGTTTTAGTTTATGACATTTACTCTGAAGAACCCACTTTTTTCAAAGATGCCGCCGGCCAGAGCAAACTGGCTGGAAATTTTGTGAGGGGTTTCCAAAGTGAGGTCTCGGCTTCTCGTGAAAGGCTGATTGATAATGCCAGATATGAATTAAGATGCCTGAGAAATGGTTTAGATATGGGGGAGAATGAAGAAATTACCGACATAGCTTTGCGCTTCTACACGATGGCGCTTGAGAGGAACTTCACAAGGGGCCGTAACACAGAGCGAGTACTGGCTGCATGTTTATACATTGCATGTCGGTCAAAGAGGAAGCCATATCTTCTTATTGAGTTCTCAAACTTGTTGAAGATAGATGTTTATACACTAGGTGCGGTATATATGCAACTGTGCAAAATTCTTTATCTTGATCAGTATCCATTCGCAAACAGACTTGTTGATCCTTCCATCTTTATTGCTAAATTTTCAGGGAGTTTACCAGGAGGAAGGGATAAAGGAGTTATTCAAACTGCAGTGCGAATTATGACTAGCATGAAACGGAATTGGATGCAGGTGCAGAAAACCAGTGGGTTATGTGGTGCTGCATTATATATATCTGCAATTTCACATGGTCTCAAGTGTTCCAAGTCAGATTTTGTCAGGATTGCACATGTTTGCGATGCAACGTTGACCAAGCGGCTGAGTGAATTTGAGAATACAGATTCTGGGAGCTTGACGATTGAAGAGTTCCATCTGAAGGAAAGTGAGCTGGACGAATTATATGAGCAACCAAATAGGACAGTTAAAATGGATAGCAGAGATGACATTCTTTGTGAACACAAGGATAATGGAAAACCTTTTGCGCTTGGACTTTGTAAATTTTGTTATGATGATTTCGTGACAATTTCAGGTGGACTTCATGGAGGATCTAATCCTCCAGCTTTCCAGCGTGCTGAGATAGAAAGAAGGAAAAAAGAGTCTGCTCAGGAGAATGCTAGTGACTCTGATGTTGATATTTTACCTTGCCAAAGCCTAGACAACAAAATGAATGGCTCAAGAGCTAGTGAAAATGGGCGATTGCACTTATGGAGAGTGTCGGTACGGGCTCCTACTGTGGATACAGCCGTTCATGTGGGCAATGAATCTTGTGATGAGTCTGACAACCTTTCGGATATTGATGATGTAGAGGTTGATGAGTACCTCCTTGATGAAGAAGGGAAACATAACAAAACGATAATTTGGGAAGCACTGAACCGTGAATACATTGAGGAGCAAGCAGCTAAGGCTGCTAGGGGAACTGAATGTCCAGAATCTCAAGCTGCTGCAGCAAAAAAAAGAAAGGAAAGGCAACTAGCTCGAGCAGAGGAAGAGAAAAATTTTACTCCAGCTCAAACTGCTGCAGAAGCTGCTTACAGAACGCTAACTAAGAAGAGACTAAGCTCAAAAATCAACTTCGATGTCCTGGAGGATATGTTTGAAACATCTGAGACTGCAGGTGTCTCTAAGAAGACACGAATTGATTCACAATCTGATAATGATGAAGAGATGCCATACATGGAGAACCAAGAGTTTGAAAATAATGACGATTTTGGTCCAGAAAACCGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

555

Amino Acids

62.63

Weight (kDa)

5.13

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIB	PF00382	72 - 158	1.4e-15	Transcription factor TFIIB repeat
TFIIB	PF00382	169 - 258	2.9e-09	Transcription factor TFIIB repeat
BRF1	PF07741	409 - 512	1.1e-24	Brf1-like TBP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	619, 1541
Acc36I	ACCTGC	2 cut(s)	619, 1541
AciI	CCGC	4 cut(s)	75, 132, 452, 754
AclI	AACGTT	1 cut(s)	743
AclWI	GGATC	2 cut(s)	512, 991
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	6 cut(s)	157, 474, 539, 764, 935, 1432
AcuI	CTGAAG	2 cut(s)	126, 833
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	3 cut(s)	351, 1158, 1256
AfiI	CCNNNNNNNGG	2 cut(s)	181, 814
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	6 cut(s)	124, 427, 584, 800, 1535, 1631
AjnI	CCWGG	3 cut(s)	34, 556, 1518
AloI	GAACNNNNNNTCC	2 cut(s)	1345, 1377
Alw26I	GTCTC	5 cut(s)	190, 695, 1483, 1538, 1561
AlwI	GGATC	2 cut(s)	512, 991
AlwNI	CAGNNNCTG	2 cut(s)	782, 1463
Ama87I	CYCGRG	1 cut(s)	1413
AoxI	GGCC	2 cut(s)	136, 331
ApeKI	GCWGC	9 cut(s)	356, 659, 1334, 1343, 1376, 1379, 1382, 1454, 1463
ApoI	RAATTY	6 cut(s)	157, 474, 539, 764, 935, 1432
Asp700I	GAANNNNTTC	1 cut(s)	1576
AspLEI	GCGC	3 cut(s)	294, 310, 922
AspS9I	GGNCC	2 cut(s)	331, 1649
AvaI	CYCGRG	1 cut(s)	1413
AvaII	GGWCC	1 cut(s)	1649
BaeI	ACNNNNGTAYC	2 cut(s)	1167, 1200
BanII	GRGCYC	1 cut(s)	1165
BauI	CACGAG	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	1571
BbvI	GCAGC	9 cut(s)	343, 646, 1330, 1346, 1363, 1366, 1394, 1441, 1450
BccI	CCATC	3 cut(s)	298, 533, 816
BceAI	ACGGC	2 cut(s)	318, 1166
BcgI	CGANNNNNNTGC	2 cut(s)	1394, 1428
BciT130I	CCWGG	3 cut(s)	36, 558, 1520
BciVI	GTATCC	2 cut(s)	504, 1168
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	5 cut(s)	190, 695, 1483, 1538, 1561
BfaI	CTAG	7 cut(s)	446, 606, 1053, 1091, 1119, 1347, 1409
BfmI	CTRYAG	4 cut(s)	588, 1380, 1455, 1548
BfoI	RGCGCY	1 cut(s)	311
BfuAI	ACCTGC	2 cut(s)	619, 1541
BfuI	GTATCC	2 cut(s)	504, 1168
BmcAI	AGTACT	1 cut(s)	351
Bme1390I	CCNGG	3 cut(s)	36, 558, 1520
Bme18I	GGWCC	1 cut(s)	1649
BmeT110I	CYCGRG	1 cut(s)	1413
BmgT120I	GGNCC	2 cut(s)	331, 1649
BmiI	GGNNCC	2 cut(s)	332, 1164
BmrFI	CCNGG	3 cut(s)	36, 558, 1520
BmsI	GCATC	5 cut(s)	118, 224, 615, 727, 1593
BpiI	GAAGAC	1 cut(s)	1571
BpmI	CTGGAG	3 cut(s)	978, 1425, 1541
Bpu10I	CCTNAGC	2 cut(s)	1041, 1338
BpuEI	CTTGAG	4 cut(s)	332, 677, 1096, 1356
BsaBI	GATNNNNATC	1 cut(s)	492
BsaI	GGTCTC	2 cut(s)	190, 695
BsaJI	CCNNGG	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	1514, 1544
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 814
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	3 cut(s)	153, 357, 642
Bse3DI	GCAATG	2 cut(s)	369, 1201
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	3 cut(s)	36, 558, 1520
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	630
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	181, 814
BseMI	GCAATG	2 cut(s)	369, 1201
BseMII	CTCAG	5 cut(s)	230, 749, 1002, 1055, 1533
BseNI	ACTGG	3 cut(s)	153, 357, 642
BseRI	GAGGAG	1 cut(s)	1340
BseXI	GCAGC	9 cut(s)	343, 646, 1330, 1346, 1363, 1366, 1394, 1441, 1450
BsgI	GTGCAG	1 cut(s)	653
BshFI	GGCC	2 cut(s)	138, 333
BsiHKCI	CYCGRG	1 cut(s)	1413
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	181, 814
BsmAI	GTCTC	5 cut(s)	190, 695, 1483, 1538, 1561
BsmFI	GGGAC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	1054
BsnI	GGCC	2 cut(s)	138, 333
Bso31I	GGTCTC	2 cut(s)	190, 695
BsoBI	CYCGRG	1 cut(s)	1413
Bsp1286I	GDGCHC	1 cut(s)	1165
Bsp143I	GATC	3 cut(s)	487, 517, 983
BspACI	CCGC	4 cut(s)	75, 132, 452, 754
BspANI	GGCC	2 cut(s)	138, 333
BspCNI	CTCAG	5 cut(s)	231, 750, 1003, 1054, 1534
BspLI	GGNNCC	2 cut(s)	332, 1164
BspMAI	CTGCAG	4 cut(s)	592, 1384, 1459, 1552
BspMI	ACCTGC	2 cut(s)	619, 1541
BspPI	GGATC	2 cut(s)	512, 991
BspTNI	GGTCTC	2 cut(s)	190, 695
BsrDI	GCAATG	2 cut(s)	369, 1201
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	153, 357, 642
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	3 cut(s)	487, 517, 983
BssSI	CACGAG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	3 cut(s)	36, 558, 1520
Bst4CI	ACNGT	4 cut(s)	468, 859, 1171, 1313
Bst6I	CTCTTC	4 cut(s)	795, 1419, 1481, 1593
BstAPI	GCANNNNNTGC	1 cut(s)	1463
BstC8I	GCNNGC	3 cut(s)	136, 1008, 1332
BstDEI	CTNAG	9 cut(s)	239, 758, 1011, 1041, 1338, 1482, 1493, 1542, 1560
BstF5I	GGATG	1 cut(s)	630
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	3 cut(s)	294, 310, 922
BstKTI	GATC	3 cut(s)	490, 520, 986
BstMAI	GTCTC	5 cut(s)	190, 695, 1483, 1538, 1561
BstMBI	GATC	3 cut(s)	487, 517, 983
BstMWI	GCNNNNNNNGC	6 cut(s)	1340, 1343, 1382, 1451, 1460, 1463
BstNI	CCWGG	3 cut(s)	36, 558, 1520
BstNSI	RCATGY	3 cut(s)	363, 378, 731
BstSCI	CCNGG	3 cut(s)	34, 556, 1518
BstSFI	CTRYAG	4 cut(s)	588, 1380, 1455, 1548
BstV1I	GCAGC	9 cut(s)	343, 646, 1330, 1346, 1363, 1366, 1394, 1441, 1450
BstV2I	GAAGAC	1 cut(s)	1571
BstX2I	RGATCY	1 cut(s)	983
BstYI	RGATCY	1 cut(s)	983
BsuI	GTATCC	2 cut(s)	504, 1168
BsuRI	GGCC	2 cut(s)	138, 333
BtgZI	GCGATG	1 cut(s)	750
BtsCI	GGATG	1 cut(s)	630
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	3 cut(s)	597, 649, 1304
BveI	ACCTGC	2 cut(s)	619, 1541
Cac8I	GCNNGC	3 cut(s)	136, 1008, 1332
CaiI	CAGNNNCTG	2 cut(s)	782, 1463
CfoI	GCGC	3 cut(s)	294, 310, 922
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	331, 1649
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	3 cut(s)	350, 1157, 1255
CviAII	CATG	8 cut(s)	360, 375, 610, 686, 728, 977, 1187, 1612
CviQI	GTAC	3 cut(s)	350, 1157, 1255
DdeI	CTNAG	9 cut(s)	239, 758, 1011, 1041, 1338, 1482, 1493, 1542, 1560
DpnI	GATC	3 cut(s)	489, 519, 985
DpnII	GATC	3 cut(s)	487, 517, 983
DraIII	CACNNNGTG	1 cut(s)	449
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	4 cut(s)	795, 1419, 1481, 1593
EarI	CTCTTC	4 cut(s)	795, 1419, 1481, 1593
Eco24I	GRGCYC	1 cut(s)	1165
Eco31I	GGTCTC	2 cut(s)	190, 695
Eco47I	GGWCC	1 cut(s)	1649
Eco57I	CTGAAG	2 cut(s)	126, 833
Eco88I	CYCGRG	1 cut(s)	1413
EcoRII	CCWGG	3 cut(s)	34, 556, 1518
EcoT38I	GRGCYC	1 cut(s)	1165
FaeI	CATG	8 cut(s)	363, 378, 613, 689, 731, 980, 1190, 1615
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	8 cut(s)	359, 374, 609, 685, 727, 976, 1186, 1611
FbaI	TGATCA	1 cut(s)	487
FokI	GGATG	1 cut(s)	637
FriOI	GRGCYC	1 cut(s)	1165
FspBI	CTAG	7 cut(s)	446, 606, 1053, 1091, 1119, 1347, 1409
GlaI	GCGC	3 cut(s)	293, 309, 921
GsuI	CTGGAG	3 cut(s)	978, 1425, 1541
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	138, 333
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	3 cut(s)	294, 310, 922
Hin1II	CATG	8 cut(s)	363, 378, 613, 689, 731, 980, 1190, 1615
Hin6I	GCGC	3 cut(s)	292, 308, 920
HinP1I	GCGC	3 cut(s)	292, 308, 920
HincII	GTYRAC	1 cut(s)	747
HindII	GTYRAC	1 cut(s)	747
HinfI	GANTC	7 cut(s)	779, 1034, 1058, 1199, 1211, 1367, 1577
HpaII	CCGG	1 cut(s)	135
Hpy166II	GTNNAC	4 cut(s)	554, 747, 893, 971
Hpy188I	TCNGA	8 cut(s)	106, 709, 813, 1063, 1216, 1228, 1543, 1588
Hpy188III	TCNNGA	8 cut(s)	197, 485, 718, 955, 1043, 1113, 1364, 1652
Hpy8I	GTNNAC	4 cut(s)	554, 747, 893, 971
HpyAV	CCTTC	5 cut(s)	531, 558, 808, 1017, 1265
HpyCH4III	ACNGT	4 cut(s)	468, 859, 1171, 1313
HpyCH4IV	ACGT	1 cut(s)	743
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1340, 1343, 1382, 1451, 1460, 1463
HpyF3I	CTNAG	9 cut(s)	239, 758, 1011, 1041, 1338, 1482, 1493, 1542, 1560
HpySE526I	ACGT	1 cut(s)	743
Hsp92II	CATG	8 cut(s)	363, 378, 613, 689, 731, 980, 1190, 1615
HspAI	GCGC	3 cut(s)	292, 308, 920
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	3 cut(s)	487, 517, 983
LmnI	GCTCC	3 cut(s)	786, 1168, 1327
Lsp1109I	GCAGC	9 cut(s)	343, 646, 1330, 1346, 1363, 1366, 1394, 1441, 1450
LweI	GCATC	5 cut(s)	118, 224, 615, 727, 1593
MaeI	CTAG	7 cut(s)	446, 606, 1053, 1091, 1119, 1347, 1409
MaeII	ACGT	1 cut(s)	743
MaeIII	GTNAC	5 cut(s)	11, 65, 335, 955, 1055
MalI	GATC	3 cut(s)	489, 519, 985
MboI	GATC	3 cut(s)	487, 517, 983
MfeI	CAATTG	1 cut(s)	16
MflI	RGATCY	1 cut(s)	983
MhlI	GDGCHC	1 cut(s)	1165
MlyI	GAGTC	3 cut(s)	1043, 1052, 1220
MroNI	GCCGGC	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	1576
MseI	TTAA	2 cut(s)	230, 861
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	3 cut(s)	36, 558, 1520
MunI	CAATTG	1 cut(s)	16
Mva1269I	GAATGC	1 cut(s)	1054
MvaI	CCWGG	3 cut(s)	36, 558, 1520
MwoI	GCNNNNNNNGC	6 cut(s)	1340, 1343, 1382, 1451, 1460, 1463
NaeI	GCCGGC	1 cut(s)	136
NdeII	GATC	3 cut(s)	487, 517, 983
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	8 cut(s)	363, 378, 613, 689, 731, 980, 1190, 1615
NlaIV	GGNNCC	2 cut(s)	332, 1164
NmeAIII	GCCGAG	1 cut(s)	167
NmuCI	GTSAC	3 cut(s)	65, 955, 1055
NspI	RCATGY	3 cut(s)	363, 378, 731
PaeR7I	CTCGAG	1 cut(s)	1413
PaqCI	CACCTGC	2 cut(s)	619, 1541
PciI	ACATGT	1 cut(s)	727
PctI	GAATGC	1 cut(s)	1054
PdiI	GCCGGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	1576
PfeI	GAWTC	4 cut(s)	779, 1199, 1367, 1577
PfoI	TCCNGGA	1 cut(s)	1518
PleI	GAGTC	3 cut(s)	1042, 1052, 1219
PpsI	GAGTC	3 cut(s)	1042, 1052, 1219
PscI	ACATGT	1 cut(s)	727
Psp1406I	AACGTT	1 cut(s)	743
Psp6I	CCWGG	3 cut(s)	34, 556, 1518
PspGI	CCWGG	3 cut(s)	34, 556, 1518
PspN4I	GGNNCC	2 cut(s)	332, 1164
PspPI	GGNCC	2 cut(s)	331, 1649
PspXI	VCTCGAGB	1 cut(s)	1413
PsrI	GAACNNNNNNTAC	2 cut(s)	1301, 1333
PstI	CTGCAG	4 cut(s)	592, 1384, 1459, 1552
PstNI	CAGNNNCTG	2 cut(s)	782, 1463
PsuI	RGATCY	1 cut(s)	983
RsaI	GTAC	3 cut(s)	351, 1158, 1256
RsaNI	GTAC	3 cut(s)	350, 1157, 1255
SaqAI	TTAA	2 cut(s)	230, 861
Sau3AI	GATC	3 cut(s)	487, 517, 983
Sau96I	GGNCC	2 cut(s)	331, 1649
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	3 cut(s)	1043, 1052, 1220
ScrFI	CCNGG	3 cut(s)	36, 558, 1520
SduI	GDGCHC	1 cut(s)	1165
SfaNI	GCATC	5 cut(s)	118, 224, 615, 727, 1593
SfcI	CTRYAG	4 cut(s)	588, 1380, 1455, 1548
Sfr274I	CTCGAG	1 cut(s)	1413
SinI	GGWCC	1 cut(s)	1649
SlaI	CTCGAG	1 cut(s)	1413
SmlI	CTYRAG	5 cut(s)	311, 692, 1111, 1371, 1413
SmoI	CTYRAG	5 cut(s)	311, 692, 1111, 1371, 1413
SsiI	CCGC	4 cut(s)	75, 132, 452, 754
SspMI	CTAG	7 cut(s)	446, 606, 1053, 1091, 1119, 1347, 1409
StyD4I	CCNGG	3 cut(s)	34, 556, 1518
TaaI	ACNGT	4 cut(s)	468, 859, 1171, 1313
TaiI	ACGT	1 cut(s)	746
TaqI	TCGA	2 cut(s)	1414, 1512
TaqII	GACCGA	1 cut(s)	369
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	3 cut(s)	78, 134, 757
TfiI	GAWTC	4 cut(s)	779, 1199, 1367, 1577
Tru1I	TTAA	2 cut(s)	230, 861
Tru9I	TTAA	2 cut(s)	230, 861
TscAI	CASTG	3 cut(s)	597, 649, 1311
TseFI	GTSAC	3 cut(s)	65, 955, 1055
TseI	GCWGC	9 cut(s)	356, 659, 1334, 1343, 1376, 1379, 1382, 1454, 1463
Tsp45I	GTSAC	3 cut(s)	65, 955, 1055
TspDTI	ATGAA	9 cut(s)	240, 282, 626, 965, 1118, 1175, 1212, 1281, 1611
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	3 cut(s)	597, 649, 1311
VpaK11BI	GGWCC	1 cut(s)	1649
XapI	RAATTY	6 cut(s)	157, 474, 539, 764, 935, 1432
XceI	RCATGY	3 cut(s)	363, 378, 731
XhoI	CTCGAG	1 cut(s)	1413
XmnI	GAANNNNTTC	1 cut(s)	1576
XspI	CTAG	7 cut(s)	446, 606, 1053, 1091, 1119, 1347, 1409
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.