Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012031.1

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Forward (+)

54113 .. 55907

Gene Structure 1795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012031.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggtgttctgtaacaattgtgggaaaagcgtctctggaacagaagatagtggtagaatatggtgtgacttatgcggcaaggttttagtgtatgacatttactctgaagaacccacttttttcaaagatgccgccggccagagcaaactggctggaaattttgtgaggggtttccaaagtgaggtctcggcttctcgtgaaaggctgattgataatgccagatatgaattaagatgcctgagaaacggtttagatatgggggagaatgaagaaattaccgacatagctttgcgcttctacacgatggcgcttgagaggaatttcacaaggggccgtaacacagagcgagtactggctgcatgtttatacattgcatgtcggtcaaagaggaagccatatcttcttattgagttctcaaacttgttgaagattgatgtttatacactaggtgcggtatatatgcaactgtgcaaaattctttatcttgatcagtatccattcgcaaacagacttgttgatccttccatctttattgctaaattttcagggagtaagtgtcggctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

188

Amino Acids

21.49

Weight (kDa)

8.55

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	75, 132, 452
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	4 cut(s)	157, 319, 474, 539
AcuI	CTGAAG	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	124, 427
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Alw26I	GTCTC	2 cut(s)	37, 190
AlwI	GGATC	1 cut(s)	512
AoxI	GGCC	2 cut(s)	136, 331
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	4 cut(s)	157, 319, 474, 539
AspLEI	GCGC	2 cut(s)	294, 310
AspS9I	GGNCC	1 cut(s)	331
BauI	CACGAG	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	2 cut(s)	298, 533
BceAI	ACGGC	1 cut(s)	318
BciVI	GTATCC	1 cut(s)	504
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	2 cut(s)	37, 190
BfaI	CTAG	1 cut(s)	446
BfoI	RGCGCY	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	504
BisI	GCNGC	3 cut(s)	76, 132, 357
BlsI	GCNGC	3 cut(s)	77, 133, 358
BmcAI	AGTACT	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	332
BmsI	GCATC	2 cut(s)	118, 224
BpuEI	CTTGAG	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	190
BsaXI	ACNNNNNCTCC	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	153, 357
Bse3DI	GCAATG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	492
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	153, 357
BseXI	GCAGC	1 cut(s)	343
BshFI	GGCC	2 cut(s)	138, 333
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	37, 190
BsmBI	CGTCTC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	138, 333
Bso31I	GGTCTC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	487, 517
BspACI	CCGC	3 cut(s)	75, 132, 452
BspANI	GGCC	2 cut(s)	138, 333
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	153, 357
BssAI	RCCGGY	1 cut(s)	134
BssMI	GATC	2 cut(s)	487, 517
BssSI	CACGAG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	248, 468
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	239
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	294, 310
BstKTI	GATC	2 cut(s)	490, 520
BstMAI	GTCTC	2 cut(s)	37, 190
BstMBI	GATC	2 cut(s)	487, 517
BstNSI	RCATGY	2 cut(s)	363, 378
BstV1I	GCAGC	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	138, 333
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	2 cut(s)	294, 310
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	2 cut(s)	360, 375
CviJI	RGCY	9 cut(s)	138, 152, 191, 205, 287, 333, 356, 394, 562
CviKI_1	RGCY	9 cut(s)	138, 152, 191, 205, 287, 333, 356, 394, 562
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	489, 519
DpnII	GATC	2 cut(s)	487, 517
DraIII	CACNNNGTG	1 cut(s)	449
EaeI	YGGCCR	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	2 cut(s)	363, 378
FatI	CATG	2 cut(s)	359, 374
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	76, 132, 357
Fsp4HI	GCNGC	3 cut(s)	76, 132, 357
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	2 cut(s)	293, 309
GluI	GCNGC	3 cut(s)	76, 132, 357
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	138, 333
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	2 cut(s)	294, 310
Hin1II	CATG	2 cut(s)	363, 378
Hin6I	GCGC	2 cut(s)	292, 308
HinP1I	GCGC	2 cut(s)	292, 308
HpaII	CCGG	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	3 cut(s)	36, 197, 485
HpyAV	CCTTC	1 cut(s)	531
HpyCH4III	ACNGT	2 cut(s)	248, 468
HpyCH4V	TGCA	4 cut(s)	359, 374, 463, 471
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	363, 378
HspAI	GCGC	2 cut(s)	292, 308
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	487, 517
LpnPI	CCDG	9 cut(s)	21, 134, 138, 148, 152, 232, 251, 338, 531
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	2 cut(s)	118, 224
MaeI	CTAG	1 cut(s)	446
MaeIII	GTNAC	3 cut(s)	11, 65, 335
MalI	GATC	2 cut(s)	489, 519
MboI	GATC	2 cut(s)	487, 517
MboII	GAAGA	5 cut(s)	56, 119, 281, 392, 439
MfeI	CAATTG	1 cut(s)	16
MluCI	AATT	7 cut(s)	16, 157, 227, 273, 319, 474, 539
MnlI	CCTC	4 cut(s)	159, 175, 309, 381
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	1 cut(s)	230
MspI	CCGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	16
NaeI	GCCGGC	1 cut(s)	136
NdeII	GATC	2 cut(s)	487, 517
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	363, 378
NlaIV	GGNNCC	1 cut(s)	332
NmeAIII	GCCGAG	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	65
NspI	RCATGY	2 cut(s)	363, 378
PdiI	GCCGGC	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	77, 133, 358
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	331
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	3 cut(s)	76, 132, 357
Sau3AI	GATC	2 cut(s)	487, 517
Sau96I	GGNCC	1 cut(s)	331
ScaI	AGTACT	1 cut(s)	351
SetI	ASST	4 cut(s)	84, 186, 289, 451
SfaNI	GCATC	2 cut(s)	118, 224
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	7 cut(s)	16, 157, 227, 273, 319, 474, 539
SsiI	CCGC	3 cut(s)	75, 132, 452
SspMI	CTAG	1 cut(s)	446
TaaI	ACNGT	2 cut(s)	248, 468
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	7 cut(s)	16, 157, 227, 273, 319, 474, 539
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	2 cut(s)	78, 134
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	240, 282
XapI	RAATTY	4 cut(s)	157, 319, 474, 539
XceI	RCATGY	2 cut(s)	363, 378
XspI	CTAG	1 cut(s)	446
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.