Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Reverse (-)

16493006 .. 16506480

Gene Structure 13475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGGTGTTCTGTAACAATTGTGGGAAAAGCGTCCCTGGAACAGAAGATAGTGGTAGAATATGGTGTGACTTATGCGGCAAGGTTTTAGTGTATGACATTTACTCTGAAGAACCGACTTTTTCAAAGATGCCGCCGGCCAGCAAACTGGCTGGAAATTTCGTGAGGGGTTTCCAAAGTGAAGTCTCGGCTTCTCGTGAAAGGCTGATTGATAATGCCAGATATGAATTAAGATGCCTGAGAAACGGTTTAGATATGGGGGAGAATGAAGAAATTACTGACATAGCTTTGCGCTTCTACACGATGGCGCTTGAGAGGAATTTCACAAGGGGCCGTAACACAGAGCGAGTACTGGCTGCATGTTTATACATTGCATGTCGGTCAAAGAGGAAGCCATATCTTCTTATTGAGTTCTCAAACTTGTTGAAGATAGATGTTTATACACTGGGTGCGGTATATATGCAACTGTGCAAAGTTCTTTATCTTGATCAATATCCTTTCGCAAACAGACTTGTTGATCCTTCCATCTTTATTGCTAAATTTTCAGGGAGTTTACCAGGAGGAAGGGATAAAGGAGTTATTCAAACTGCAGTGCGAATTCTCACTAGCATGAAACGGAATTGGATGCAGACAGGCAGAAAACCCAGTGGGTTATGTGGTGCTGCATTATATATATCTGCAATTTCACATGGTCTCAAGTGTTCCAAGTCAGATTTTGTCAGGATTGCACATGTTTGCGATGCAACGTTGACCAAGCGGCTGAGTGAATTTGAGAATACAGATTCTGGGAACTTGACGATTGAAGAGTTCCATCTGAAGGAAAGTGAGCTGGACGAATTATATGAGCAACCAAATAGGAGAGTTAAAACGGATAGCAGAGATGACATTCTTTGTGAACACAAGGATAGTGGAAAACCTTTTGCGCTTGGACTTTGTAAATTTTGTTATGATGACTTCGTGACAATTTCAGGTGGACTTCATGGAGGATCTAATCCTCCAGCTTTCCAGCGTGCTGAGATAGAAAGAAGGAAAAAAGAGTCTGCTCAGGAGAATGCTAGTGACTCTGATGTTGATATTTTACCTTGCCAAAGCCTAGACAACAGTCAACAATCAAATGTAAATGTTAAACCTTTTTTATTTTTTGCTGCTACCTGTGGTGATATGAGGGCTTTTGCACGGTTTTTGGAAAGATTCTATTTGACTGACTGCAGCATGTTTACTATAGCCGTTCATGCGGGCAATGAATCTTGTGATGAGTCTGACAACCTTTCGGATATTGATGATGTAGAGACTCTTAGACTACCACGGACACCTCACTTTGGAGTAAAACAGGGCTGGCTTAGTCTCAGGCATCCAAAGAGGGTCTGCTCTAACAAAGCTGTAGCTATTCCATCAAGTAATCAATCCCTGGGAACTGCTAAGGTTGATGAGTACCTCCTTGATGAAGAGGGGAAACATCACAAAACGATAATTTGGGAAGCACTGAACCGTGAATACATTGAGGAGCAAGCAGCTAAGGCTGCTAGGGGAACCGAATGCCCAGAATCTCAAGCTGCTGCAGCAAAAAAAAGAAAGGAAAGGCAACTAGCTCGAGCAGAGGAAGAGAGAAATTTTACTCCAGCTCAAACTGCTGCAGAAGCTGCTTACAGAACGCTAACTAAGAAGCCTGTTGTAGGTACTAGGAGACTAAGCTCAAAAATCAACTTCGATGTCCTGGAGGATATGTTTGAAACATCTTTTTTTGTTAGGCTGAACTATCTAGGGTTCATTACAAAGCAGTTTTCGGTGTCTCTGTGCATTGACAATATTAAGGTTTGCACTTATGGTTATCCTGTTTTGGGGGAACTTACTGGGAGTGTTTGGGCGCTAGCAGGTGTGGTTGGGGCGTACATTTTAGCATTGTTGGTTCAAGAAACACCAGGTAGGGTTGACAGACTAGGGGAGACTGCAGGTGTCTCGAAGAAGACACGAATTGATTCACAATCTGATAATGATAAAGAGATGCCATACATGGAGAACCAAGAGTTTGAAAATAATGACGATTTTGGTCCAGAAACCGAATATGAGGAAAGAATTGAAGGCACATATAACAGCAGTTTCGATTTTGATAATGTTCATGAAGGATATGACAACGGTGAAGATTTTGGTTATGAGGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

719

Amino Acids

81.0

Weight (kDa)

5.34

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIB	PF00382	71 - 156	2.4e-15	Transcription factor TFIIB repeat
TFIIB	PF00382	168 - 258	1.8e-14	Transcription factor TFIIB repeat
BRF1	PF07741	473 - 576	2.5e-19	Brf1-like TBP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1859, 1937
Acc36I	ACCTGC	2 cut(s)	1859, 1937
AciI	CCGC	5 cut(s)	75, 131, 449, 754, 1232
AclI	AACGTT	1 cut(s)	743
AclWI	GGATC	2 cut(s)	509, 991
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	7 cut(s)	154, 316, 536, 594, 764, 935, 1606
AcuI	CTGAAG	2 cut(s)	126, 833
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	4 cut(s)	348, 1430, 1675, 1886
AfiI	CCNNNNNNNGG	4 cut(s)	814, 1316, 1670, 1835
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	8 cut(s)	123, 424, 581, 800, 1727, 1907, 2027, 2075
AjnI	CCWGG	5 cut(s)	34, 553, 1404, 1710, 1915
Alw26I	GTCTC	8 cut(s)	187, 695, 1280, 1346, 1675, 1791, 1934, 1957
AlwI	GGATC	2 cut(s)	509, 991
AlwNI	CAGNNNCTG	2 cut(s)	782, 1637
Ama87I	CYCGRG	1 cut(s)	1587
AoxI	GGCC	2 cut(s)	135, 328
ApoI	RAATTY	7 cut(s)	154, 316, 536, 594, 764, 935, 1606
Asp700I	GAANNNNTTC	1 cut(s)	1972
AspLEI	GCGC	4 cut(s)	291, 307, 922, 1864
AspS9I	GGNCC	2 cut(s)	328, 2045
AsuHPI	GGTGA	2 cut(s)	1166, 2144
AsuNHI	GCTAGC	1 cut(s)	1864
AvaI	CYCGRG	1 cut(s)	1587
AvaII	GGWCC	1 cut(s)	2045
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	1967
BccI	CCATC	4 cut(s)	295, 530, 816, 1396
BceAI	ACGGC	2 cut(s)	315, 1208
BcgI	CGANNNNNNTGC	4 cut(s)	1568, 1602, 1935, 1969
BciT130I	CCWGG	5 cut(s)	36, 555, 1406, 1712, 1917
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	8 cut(s)	187, 695, 1280, 1346, 1675, 1791, 1934, 1957
BfaI	CTAG	9 cut(s)	603, 1053, 1091, 1521, 1583, 1677, 1757, 1865, 1934
BfmI	CTRYAG	7 cut(s)	585, 1204, 1218, 1377, 1554, 1629, 1944
BfoI	RGCGCY	2 cut(s)	308, 1865
BfuAI	ACCTGC	2 cut(s)	1859, 1937
BmcAI	AGTACT	1 cut(s)	348
Bme1390I	CCNGG	5 cut(s)	36, 555, 1406, 1712, 1917
Bme18I	GGWCC	1 cut(s)	2045
BmeT110I	CYCGRG	1 cut(s)	1587
BmgT120I	GGNCC	2 cut(s)	328, 2045
BmiI	GGNNCC	2 cut(s)	329, 1528
BmrFI	CCNGG	5 cut(s)	36, 555, 1406, 1712, 1917
BmrI	ACTGGG	3 cut(s)	452, 636, 1857
BmsI	GCATC	6 cut(s)	117, 221, 612, 727, 1357, 1989
BmtI	GCTAGC	1 cut(s)	1868
BmuI	ACTGGG	3 cut(s)	452, 636, 1857
BoxI	GACNNNNGTC	1 cut(s)	1098
BpiI	GAAGAC	1 cut(s)	1967
BpmI	CTGGAG	3 cut(s)	978, 1599, 1733
Bpu10I	CCTNAGC	3 cut(s)	1041, 1416, 1512
BpuEI	CTTGAG	3 cut(s)	329, 677, 1530
BsaBI	GATNNNNATC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	695
BsaJI	CCNNGG	4 cut(s)	34, 1301, 1404, 1405
BsaXI	ACNNNNNCTCC	2 cut(s)	1706, 1736
Bsc4I	CCNNNNNNNGG	4 cut(s)	814, 1316, 1670, 1835
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	5 cut(s)	150, 354, 447, 642, 1852
Bse3DI	GCAATG	2 cut(s)	366, 1243
Bse8I	GATNNNNATC	1 cut(s)	489
BseBI	CCWGG	5 cut(s)	36, 555, 1406, 1712, 1917
BseDI	CCNNGG	4 cut(s)	34, 1301, 1404, 1405
BseGI	GGATG	2 cut(s)	627, 1348
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	4 cut(s)	814, 1316, 1670, 1835
BseMI	GCAATG	2 cut(s)	366, 1243
BseMII	CTCAG	5 cut(s)	227, 749, 1002, 1055, 1357
BseNI	ACTGG	5 cut(s)	150, 354, 447, 642, 1852
BseRI	GAGGAG	1 cut(s)	1514
BshFI	GGCC	2 cut(s)	137, 330
BsiHKCI	CYCGRG	1 cut(s)	1587
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	4 cut(s)	814, 1316, 1670, 1835
BsmAI	GTCTC	8 cut(s)	187, 695, 1280, 1346, 1675, 1791, 1934, 1957
BsmFI	GGGAC	1 cut(s)	17
BsmI	GAATGC	2 cut(s)	1054, 1538
BsnI	GGCC	2 cut(s)	137, 330
Bso31I	GGTCTC	1 cut(s)	695
BsoBI	CYCGRG	1 cut(s)	1587
Bsp143I	GATC	3 cut(s)	484, 514, 983
BspACI	CCGC	5 cut(s)	75, 131, 449, 754, 1232
BspANI	GGCC	2 cut(s)	137, 330
BspCNI	CTCAG	5 cut(s)	228, 750, 1003, 1054, 1356
BspHI	TCATGA	1 cut(s)	2113
BspLI	GGNNCC	2 cut(s)	329, 1528
BspMAI	CTGCAG	5 cut(s)	589, 1208, 1558, 1633, 1948
BspMI	ACCTGC	2 cut(s)	1859, 1937
BspOI	GCTAGC	1 cut(s)	1868
BspPI	GGATC	2 cut(s)	509, 991
BspTNI	GGTCTC	1 cut(s)	695
BsrDI	GCAATG	2 cut(s)	366, 1243
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	5 cut(s)	150, 354, 447, 642, 1852
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	4 cut(s)	34, 1301, 1404, 1405
BssMI	GATC	3 cut(s)	484, 514, 983
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	5 cut(s)	36, 555, 1406, 1712, 1917
Bst4CI	ACNGT	6 cut(s)	245, 465, 1100, 1176, 1487, 2132
Bst6I	CTCTTC	3 cut(s)	795, 1437, 1593
BstAPI	GCANNNNNTGC	1 cut(s)	1637
BstC8I	GCNNGC	7 cut(s)	135, 139, 1008, 1234, 1334, 1506, 1866
BstDSI	CCRYGG	1 cut(s)	1301
BstENI	CCTNNNNNAGG	1 cut(s)	1668
BstF5I	GGATG	2 cut(s)	627, 1348
BstH2I	RGCGCY	2 cut(s)	308, 1865
BstHHI	GCGC	4 cut(s)	291, 307, 922, 1864
BstKTI	GATC	3 cut(s)	487, 517, 986
BstMAI	GTCTC	8 cut(s)	187, 695, 1280, 1346, 1675, 1791, 1934, 1957
BstMBI	GATC	3 cut(s)	484, 514, 983
BstMWI	GCNNNNNNNGC	7 cut(s)	1229, 1514, 1517, 1556, 1625, 1634, 1637
BstNI	CCWGG	5 cut(s)	36, 555, 1406, 1712, 1917
BstNSI	RCATGY	4 cut(s)	360, 375, 731, 1213
BstPAI	GACNNNNGTC	1 cut(s)	1098
BstSCI	CCNGG	5 cut(s)	34, 553, 1404, 1710, 1915
BstSFI	CTRYAG	7 cut(s)	585, 1204, 1218, 1377, 1554, 1629, 1944
BstV2I	GAAGAC	1 cut(s)	1967
BstX2I	RGATCY	1 cut(s)	983
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	983
BsuRI	GGCC	2 cut(s)	137, 330
BtgI	CCRYGG	1 cut(s)	1301
BtgZI	GCGATG	1 cut(s)	750
BtsCI	GGATG	2 cut(s)	627, 1348
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	4 cut(s)	440, 594, 649, 1478
BveI	ACCTGC	2 cut(s)	1859, 1937
Cac8I	GCNNGC	7 cut(s)	135, 139, 1008, 1234, 1334, 1506, 1866
CaiI	CAGNNNCTG	2 cut(s)	782, 1637
CciI	TCATGA	1 cut(s)	2113
CfoI	GCGC	4 cut(s)	291, 307, 922, 1864
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	328, 2045
CseI	GACGC	1 cut(s)	19
CsiI	ACCWGGT	1 cut(s)	1915
Csp6I	GTAC	4 cut(s)	347, 1429, 1674, 1885
CspCI	CAANNNNNGTGG	2 cut(s)	886, 921
CviQI	GTAC	4 cut(s)	347, 1429, 1674, 1885
DpnI	GATC	3 cut(s)	486, 516, 985
DpnII	GATC	3 cut(s)	484, 514, 983
DraIII	CACNNNGTG	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	3 cut(s)	795, 1437, 1593
EarI	CTCTTC	3 cut(s)	795, 1437, 1593
Eco31I	GGTCTC	1 cut(s)	695
Eco47I	GGWCC	1 cut(s)	2045
Eco57I	CTGAAG	2 cut(s)	126, 833
Eco88I	CYCGRG	1 cut(s)	1587
EcoNI	CCTNNNNNAGG	1 cut(s)	1668
EcoRI	GAATTC	1 cut(s)	594
EcoRII	CCWGG	5 cut(s)	34, 553, 1404, 1710, 1915
FaqI	GGGAC	1 cut(s)	17
FauI	CCCGC	1 cut(s)	1225
FbaI	TGATCA	1 cut(s)	484
FokI	GGATG	2 cut(s)	634, 1335
FspBI	CTAG	9 cut(s)	603, 1053, 1091, 1521, 1583, 1677, 1757, 1865, 1934
GlaI	GCGC	4 cut(s)	290, 306, 921, 1863
GsuI	CTGGAG	3 cut(s)	978, 1599, 1733
HaeII	RGCGCY	2 cut(s)	308, 1865
HaeIII	GGCC	2 cut(s)	137, 330
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	4 cut(s)	291, 307, 922, 1864
Hin6I	GCGC	4 cut(s)	289, 305, 920, 1862
HinP1I	GCGC	4 cut(s)	289, 305, 920, 1862
HincII	GTYRAC	3 cut(s)	747, 1103, 1927
HindII	GTYRAC	3 cut(s)	747, 1103, 1927
HinfI	GANTC	9 cut(s)	779, 1034, 1058, 1188, 1241, 1253, 1288, 1541, 1973
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	2 cut(s)	1166, 2144
Hpy166II	GTNNAC	7 cut(s)	551, 747, 893, 971, 1103, 1215, 1927
Hpy188I	TCNGA	7 cut(s)	106, 709, 813, 1063, 1258, 1270, 1984
Hpy8I	GTNNAC	7 cut(s)	551, 747, 893, 971, 1103, 1215, 1927
HpyAV	CCTTC	6 cut(s)	528, 555, 808, 1017, 2069, 2111
HpyCH4III	ACNGT	6 cut(s)	245, 465, 1100, 1176, 1487, 2132
HpyCH4IV	ACGT	1 cut(s)	743
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1229, 1514, 1517, 1556, 1625, 1634, 1637
HpySE526I	ACGT	1 cut(s)	743
HspAI	GCGC	4 cut(s)	289, 305, 920, 1862
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	484, 514, 983
LmnI	GCTCC	1 cut(s)	1501
LweI	GCATC	6 cut(s)	117, 221, 612, 727, 1357, 1989
MabI	ACCWGGT	1 cut(s)	1915
MaeI	CTAG	9 cut(s)	603, 1053, 1091, 1521, 1583, 1677, 1757, 1865, 1934
MaeII	ACGT	1 cut(s)	743
MaeIII	GTNAC	5 cut(s)	11, 65, 332, 955, 1055
MalI	GATC	3 cut(s)	486, 516, 985
MboI	GATC	3 cut(s)	484, 514, 983
MfeI	CAATTG	1 cut(s)	16
MflI	RGATCY	1 cut(s)	983
MlyI	GAGTC	4 cut(s)	1043, 1052, 1262, 1282
MroNI	GCCGGC	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	1972
MseI	TTAA	4 cut(s)	227, 861, 1122, 1806
MslI	CAYNNNNRTG	1 cut(s)	605
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	5 cut(s)	36, 555, 1406, 1712, 1917
MunI	CAATTG	1 cut(s)	16
Mva1269I	GAATGC	2 cut(s)	1054, 1538
MvaI	CCWGG	5 cut(s)	36, 555, 1406, 1712, 1917
MwoI	GCNNNNNNNGC	7 cut(s)	1229, 1514, 1517, 1556, 1625, 1634, 1637
NaeI	GCCGGC	1 cut(s)	135
NdeII	GATC	3 cut(s)	484, 514, 983
NgoMIV	GCCGGC	1 cut(s)	133
NheI	GCTAGC	1 cut(s)	1864
NlaIV	GGNNCC	2 cut(s)	329, 1528
NmeAIII	GCCGAG	1 cut(s)	164
NmuCI	GTSAC	3 cut(s)	65, 955, 1055
NspI	RCATGY	4 cut(s)	360, 375, 731, 1213
PaeR7I	CTCGAG	1 cut(s)	1587
PagI	TCATGA	1 cut(s)	2113
PaqCI	CACCTGC	2 cut(s)	1859, 1937
PasI	CCCWGGG	1 cut(s)	1405
PciI	ACATGT	1 cut(s)	727
PctI	GAATGC	2 cut(s)	1054, 1538
PdiI	GCCGGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	1972
PfeI	GAWTC	5 cut(s)	779, 1188, 1241, 1541, 1973
PfoI	TCCNGGA	1 cut(s)	1710
PleI	GAGTC	4 cut(s)	1042, 1052, 1261, 1282
PpsI	GAGTC	4 cut(s)	1042, 1052, 1261, 1282
PscI	ACATGT	1 cut(s)	727
PshAI	GACNNNNGTC	1 cut(s)	1098
Psp1406I	AACGTT	1 cut(s)	743
Psp6I	CCWGG	5 cut(s)	34, 553, 1404, 1710, 1915
PspGI	CCWGG	5 cut(s)	34, 553, 1404, 1710, 1915
PspN4I	GGNNCC	2 cut(s)	329, 1528
PspPI	GGNCC	2 cut(s)	328, 2045
PspXI	VCTCGAGB	1 cut(s)	1587
PsrI	GAACNNNNNNTAC	2 cut(s)	1475, 1507
PstI	CTGCAG	5 cut(s)	589, 1208, 1558, 1633, 1948
PstNI	CAGNNNCTG	2 cut(s)	782, 1637
PsuI	RGATCY	1 cut(s)	983
RsaI	GTAC	4 cut(s)	348, 1430, 1675, 1886
RsaNI	GTAC	4 cut(s)	347, 1429, 1674, 1885
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	4 cut(s)	227, 861, 1122, 1806
Sau3AI	GATC	3 cut(s)	484, 514, 983
Sau96I	GGNCC	2 cut(s)	328, 2045
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	4 cut(s)	1043, 1052, 1262, 1282
ScrFI	CCNGG	5 cut(s)	36, 555, 1406, 1712, 1917
SexAI	ACCWGGT	1 cut(s)	1915
SfaNI	GCATC	6 cut(s)	117, 221, 612, 727, 1357, 1989
SfcI	CTRYAG	7 cut(s)	585, 1204, 1218, 1377, 1554, 1629, 1944
Sfr274I	CTCGAG	1 cut(s)	1587
SinI	GGWCC	1 cut(s)	2045
SlaI	CTCGAG	1 cut(s)	1587
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	4 cut(s)	308, 692, 1545, 1587
SmoI	CTYRAG	4 cut(s)	308, 692, 1545, 1587
SsiI	CCGC	5 cut(s)	75, 131, 449, 754, 1232
SspI	AATATT	1 cut(s)	1804
SspMI	CTAG	9 cut(s)	603, 1053, 1091, 1521, 1583, 1677, 1757, 1865, 1934
StyD4I	CCNGG	5 cut(s)	34, 553, 1404, 1710, 1915
TaaI	ACNGT	6 cut(s)	245, 465, 1100, 1176, 1487, 2132
TaiI	ACGT	1 cut(s)	746
TaqI	TCGA	4 cut(s)	1588, 1704, 1955, 2097
TaqII	GACCGA	1 cut(s)	366
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	3 cut(s)	78, 133, 757
TfiI	GAWTC	5 cut(s)	779, 1188, 1241, 1541, 1973
Tru1I	TTAA	4 cut(s)	227, 861, 1122, 1806
Tru9I	TTAA	4 cut(s)	227, 861, 1122, 1806
TscAI	CASTG	4 cut(s)	447, 594, 649, 1485
TseFI	GTSAC	3 cut(s)	65, 955, 1055
Tsp45I	GTSAC	3 cut(s)	65, 955, 1055
TspGWI	ACGGA	3 cut(s)	628, 881, 1318
TspRI	CASTG	4 cut(s)	447, 594, 649, 1485
VpaK11BI	GGWCC	1 cut(s)	2045
XagI	CCTNNNNNAGG	1 cut(s)	1668
XapI	RAATTY	7 cut(s)	154, 316, 536, 594, 764, 935, 1606
XceI	RCATGY	4 cut(s)	360, 375, 731, 1213
XhoI	CTCGAG	1 cut(s)	1587
XmnI	GAANNNNTTC	1 cut(s)	1972
XspI	CTAG	9 cut(s)	603, 1053, 1091, 1521, 1583, 1677, 1757, 1865, 1934
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.