Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Forward (+)

6357014 .. 6357382

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCGACAAAATGCCCCATCACAGTGAAGAACTTGAATCTGATGCATACAAAGGATGATGACTTGGGAATGGCACAGGAATATGAGAATGAAGGACTTGAACACATAGGCTACAACAACTATGATTGTGTTGAGGAAGTAGATGAGGCCGACACTTGGGGTAGGCCAAGATGGCGGCCGCCTCCACCCCATATTCTGGGGACTTCTGGTGGTGACTTGTGTACTACCATGCCTGGTAGTTATTTAAGAGATGAAATGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

88

Amino Acids

9.84

Weight (kDa)

4.48

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	196
AciI	CCGC	2 cut(s)	175, 179
AcoI	YGGCCR	1 cut(s)	176
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	156, 196
AgsI	TTSAA	2 cut(s)	37, 101
AjnI	CCWGG	1 cut(s)	232
AoxI	GGCC	3 cut(s)	147, 164, 176
AsuHPI	GGTGA	1 cut(s)	224
BccI	CCATC	2 cut(s)	26, 165
BciT130I	CCWGG	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	176, 179
BlsI	GCNGC	2 cut(s)	177, 180
Bme1390I	CCNGG	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 196
BseBI	CCWGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	156, 196
BseX3I	CGGCCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	3 cut(s)	149, 166, 178
BsiEI	CGRYCG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	156, 196
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	149, 166, 178
BspACI	CCGC	2 cut(s)	175, 179
BspANI	GGCC	3 cut(s)	149, 166, 178
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	61
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstZI	CGGCCG	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	149, 166, 178
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	30
CciNI	GCGGCCGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	4 cut(s)	111, 149, 166, 178
CviKI_1	RGCY	4 cut(s)	111, 149, 166, 178
CviQI	GTAC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	176
EagI	CGGCCG	1 cut(s)	176
EclXI	CGGCCG	1 cut(s)	176
Eco52I	CGGCCG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	232
EcoT22I	ATGCAT	1 cut(s)	48
FaeI	CATG	1 cut(s)	232
FaiI	YATR	7 cut(s)	48, 84, 107, 123, 192, 230, 262
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	176, 179
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	2 cut(s)	176, 179
GluI	GCNGC	2 cut(s)	176, 179
HaeIII	GGCC	3 cut(s)	149, 166, 178
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	232
LpnPI	CCDG	5 cut(s)	62, 182, 192, 219, 246
LweI	GCATC	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	212
MboII	GAAGA	1 cut(s)	40
MnlI	CCTC	3 cut(s)	127, 139, 192
Mph1103I	ATGCAT	1 cut(s)	48
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	212
NotI	GCGGCCGC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	177, 180
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	2 cut(s)	176, 179
ScrFI	CCNGG	1 cut(s)	234
SfaNI	GCATC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	23
SsiI	CCGC	2 cut(s)	175, 179
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	25
TatI	WGTACW	1 cut(s)	221
TauI	GCSGC	2 cut(s)	178, 181
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.