Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001348.1

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Reverse (-)

113646 .. 118424

Gene Structure 4779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001348.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atggagaatacagctgttgagaccggaactgaagcttgtgatgatgagtctgacaatttttcagatattgatgatctggaggttgacggctaccttcttaatgaagaggggaaacgctacaaaaagatgatttgggaagaaatgaatcgtgaatacattgaggagcaagcagcgaaggaggaagcagctaaggctgctatggatatcaattgtccagaaggtgcaaagaaacttgcgcaaaatactgaagcagctgttgccaagagaaaaaaggagaggcaactagctagagcagctgaagcgaaaaactctactccagctcagactgctgcagaagctgtccaccaaatgctaactaagaagagactcagctcaaaaatcaactttgatgtcctggagaatatgttcgaaacatctgaggctcctgatgtctcccagaaaagaaaaattgattcacatcttgacaatgacgacaagatgcccgatgacagtgaagagcttgaatttgatgcatacaaagatgatgacttgggtatggaacatgaatatggggatgaagaaggaattgaaggaacaggctacagcaattatggttatgttgatgaagtagacgagtacaatgatcgtgattatgatgatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

214

Amino Acids

24.38

Weight (kDa)

4.26

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	609
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	3 cut(s)	51, 267, 318
AfaI	GTAC	1 cut(s)	617
AgsI	TTSAA	2 cut(s)	503, 569
AjnI	CCWGG	1 cut(s)	393
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
Alw26I	GTCTC	3 cut(s)	14, 358, 436
AlwNI	CAGNNNCTG	1 cut(s)	338
ApeKI	GCWGC	6 cut(s)	170, 185, 194, 251, 293, 329
ApoI	RAATTY	1 cut(s)	503
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	238
AsuII	TTCGAA	1 cut(s)	408
BbvI	GCAGC	6 cut(s)	181, 182, 197, 263, 305, 316
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	14, 358, 436
BfaI	CTAG	2 cut(s)	284, 288
BfmI	CTRYAG	2 cut(s)	330, 580
BisI	GCNGC	6 cut(s)	171, 186, 195, 252, 294, 330
BlsI	GCNGC	6 cut(s)	172, 187, 196, 253, 295, 331
Bme1390I	CCNGG	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	468, 499
BpmI	CTGGAG	3 cut(s)	98, 300, 416
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	395
BseGI	GGATG	1 cut(s)	559
BseJI	GATNNNNATC	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	335, 382, 408
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	6 cut(s)	181, 182, 197, 263, 305, 316
BsiSI	CCGG	1 cut(s)	24
BsmAI	GTCTC	3 cut(s)	14, 358, 436
Bso31I	GGTCTC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	73, 622
BspCNI	CTCAG	3 cut(s)	334, 381, 409
BspLI	GGNNCC	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	489
BspT104I	TTCGAA	1 cut(s)	408
BspTNI	GGTCTC	1 cut(s)	14
BssMI	GATC	2 cut(s)	73, 622
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	3 cut(s)	99, 356, 489
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	5 cut(s)	189, 321, 357, 368, 417
BstF5I	GGATG	1 cut(s)	559
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	2 cut(s)	76, 625
BstMAI	GTCTC	3 cut(s)	14, 358, 436
BstMBI	GATC	2 cut(s)	73, 622
BstMWI	GCNNNNNNNGC	7 cut(s)	191, 194, 257, 293, 299, 326, 335
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	330, 580
BstV1I	GCAGC	6 cut(s)	181, 182, 197, 263, 305, 316
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	496
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	1 cut(s)	542
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	5 cut(s)	189, 321, 357, 368, 417
DpnI	GATC	2 cut(s)	75, 624
DpnII	GATC	2 cut(s)	73, 622
Eam1104I	CTCTTC	3 cut(s)	99, 356, 489
EarI	CTCTTC	3 cut(s)	99, 356, 489
Eco31I	GGTCTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	205
Eco57I	CTGAAG	3 cut(s)	51, 267, 318
EcoRII	CCWGG	1 cut(s)	393
EcoRV	GATATC	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	514
FaeI	CATG	1 cut(s)	545
FaiI	YATR	9 cut(s)	200, 404, 514, 536, 543, 549, 591, 597, 633
FatI	CATG	1 cut(s)	541
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	6 cut(s)	171, 186, 195, 252, 294, 330
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	6 cut(s)	171, 186, 195, 252, 294, 330
FspBI	CTAG	2 cut(s)	284, 288
FspI	TGCGCA	1 cut(s)	237
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	6 cut(s)	171, 186, 195, 252, 294, 330
GsuI	CTGGAG	3 cut(s)	98, 300, 416
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	545
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	4 cut(s)	47, 145, 366, 452
HpaII	CCGG	1 cut(s)	24
Hpy166II	GTNNAC	3 cut(s)	85, 343, 610
Hpy188I	TCNGA	5 cut(s)	52, 64, 324, 418, 644
Hpy188III	TCNNGA	6 cut(s)	77, 149, 215, 425, 461, 626
Hpy8I	GTNNAC	3 cut(s)	85, 343, 610
HpyAV	CCTTC	5 cut(s)	104, 169, 212, 554, 563
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4V	TGCA	3 cut(s)	224, 332, 512
HpyF10VI	GCNNNNNNNGC	7 cut(s)	191, 194, 257, 293, 299, 326, 335
HpyF3I	CTNAG	5 cut(s)	189, 321, 357, 368, 417
Hsp92II	CATG	1 cut(s)	545
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	2 cut(s)	73, 622
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	2 cut(s)	163, 427
LpnPI	CCDG	9 cut(s)	37, 62, 228, 330, 380, 407, 438, 449, 561
Lsp1109I	GCAGC	6 cut(s)	181, 182, 197, 263, 305, 316
LweI	GCATC	2 cut(s)	468, 499
MaeI	CTAG	2 cut(s)	284, 288
MalI	GATC	2 cut(s)	75, 624
MboI	GATC	2 cut(s)	73, 622
MboII	GAAGA	5 cut(s)	116, 149, 373, 506, 569
MfeI	CAATTG	1 cut(s)	208
MluCI	AATT	6 cut(s)	55, 208, 447, 503, 564, 586
MlyI	GAGTC	2 cut(s)	56, 360
MnlI	CCTC	6 cut(s)	73, 100, 154, 172, 270, 412
Mph1103I	ATGCAT	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	3 cut(s)	14, 254, 296
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	7 cut(s)	191, 194, 257, 293, 299, 326, 335
NdeII	GATC	2 cut(s)	73, 622
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	1 cut(s)	423
NsbI	TGCGCA	1 cut(s)	237
NsiI	ATGCAT	1 cut(s)	514
NspV	TTCGAA	1 cut(s)	408
PciSI	GCTCTTC	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	145, 452
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	6 cut(s)	172, 187, 196, 253, 295, 331
PleI	GAGTC	2 cut(s)	55, 360
PpsI	GAGTC	2 cut(s)	55, 360
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	338
PvuII	CAGCTG	3 cut(s)	14, 254, 296
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
RseI	CAYNNNNRTG	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	6 cut(s)	171, 186, 195, 252, 294, 330
Sau3AI	GATC	2 cut(s)	73, 622
SchI	GAGTC	2 cut(s)	56, 360
ScrFI	CCNGG	1 cut(s)	395
SfaNI	GCATC	2 cut(s)	468, 499
SfcI	CTRYAG	2 cut(s)	330, 580
SfuI	TTCGAA	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	546
Sse9I	AATT	6 cut(s)	55, 208, 447, 503, 564, 586
SspMI	CTAG	2 cut(s)	284, 288
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	491
TaqI	TCGA	1 cut(s)	408
TasI	AATT	6 cut(s)	55, 208, 447, 503, 564, 586
TatI	WGTACW	1 cut(s)	615
TfiI	GAWTC	2 cut(s)	145, 452
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	6 cut(s)	170, 185, 194, 251, 293, 329
TspDTI	ATGAA	5 cut(s)	117, 158, 558, 570, 618
TspRI	CASTG	1 cut(s)	496
XapI	RAATTY	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	2 cut(s)	284, 288
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.