Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Forward (+)

45509529 .. 45533790

Gene Structure 24262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG319000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCACCGGATCGTTCGCGGCGAGGCTGGTGGAGGAATGAGCGATCTGCAGCTCTGACGGTCTTGGCTTGGAAGATTGGTGGTTGGGCCGAGCTTGGCGCTAGGGATCTTGTAGAATATGAATTGAGATGTATGAGAAATGCTTTAGATGAAGAAATTATTGACATAGCTAAATGCTTTTATAGAATTGTGATTGAGCGGAATTTCACAAGGGGCCGTAAGTCAGAGCAAGTACAGGCTGCATGTCTTTACATTGCATATTTCATCGGACTCCTTGCCCAGATGTTGATATGGTTACCATTGTTGTTGTGTTGTGGGTGGGAGCCAGAGAATGGTTGGTTTCATTTGGTCGTCATTTTGTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

122

Amino Acids

14.28

Weight (kDa)

7.61

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIB	PF00382	48 - 86	3.7e-07	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	199
AccII	CGCG	1 cut(s)	19
AciI	CCGC	2 cut(s)	19, 199
AclWI	GGATC	2 cut(s)	18, 114
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	332
AluBI	AGCT	3 cut(s)	53, 94, 170
AluI	AGCT	3 cut(s)	53, 94, 170
AlwI	GGATC	2 cut(s)	18, 114
AoxI	GGCC	2 cut(s)	87, 214
ApeKI	GCWGC	2 cut(s)	50, 239
ApoI	RAATTY	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	87, 214
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	62, 226
BceAI	ACGGC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	3 cut(s)	20, 51, 240
BlsI	GCNGC	3 cut(s)	21, 52, 241
BmgT120I	GGNCC	2 cut(s)	87, 214
BmiI	GGNNCC	3 cut(s)	6, 215, 324
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	62, 226
Bsh1236I	CGCG	1 cut(s)	19
BshFI	GGCC	2 cut(s)	89, 216
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	332
BsnI	GGCC	2 cut(s)	89, 216
Bsp143I	GATC	3 cut(s)	10, 44, 106
BspACI	CCGC	2 cut(s)	19, 199
BspANI	GGCC	2 cut(s)	89, 216
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	3 cut(s)	6, 215, 324
BspMAI	CTGCAG	1 cut(s)	52
BspPI	GGATC	2 cut(s)	18, 114
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	252
BssMI	GATC	3 cut(s)	10, 44, 106
Bst4CI	ACNGT	1 cut(s)	61
BstEII	GGTNACC	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	19
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	3 cut(s)	13, 47, 109
BstMBI	GATC	3 cut(s)	10, 44, 106
BstNSI	RCATGY	1 cut(s)	246
BstPI	GGTNACC	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	62, 226
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	89, 216
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	87, 214
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	9 cut(s)	27, 53, 68, 89, 94, 170, 216, 239, 325
CviKI_1	RGCY	9 cut(s)	27, 53, 68, 89, 94, 170, 216, 239, 325
CviQI	GTAC	1 cut(s)	233
DpnI	GATC	3 cut(s)	12, 46, 108
DpnII	GATC	3 cut(s)	10, 44, 106
Eco91I	GGTNACC	1 cut(s)	294
EcoO65I	GGTNACC	1 cut(s)	294
FaeI	CATG	1 cut(s)	246
FaiI	YATR	7 cut(s)	120, 134, 167, 183, 244, 259, 292
FatI	CATG	1 cut(s)	242
Fnu4HI	GCNGC	3 cut(s)	20, 51, 240
Fsp4HI	GCNGC	3 cut(s)	20, 51, 240
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	3 cut(s)	20, 51, 240
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	89, 216
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	246
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	1 cut(s)	270
HpaII	CCGG	1 cut(s)	8
Hpy188I	TCNGA	3 cut(s)	57, 226, 269
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	50, 242, 257
Hsp92II	CATG	1 cut(s)	246
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	10, 44, 106
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	5 cut(s)	13, 21, 221, 293, 339
Lsp1109I	GCAGC	2 cut(s)	62, 226
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	3 cut(s)	12, 46, 108
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	3 cut(s)	10, 44, 106
MboII	GAAGA	2 cut(s)	85, 164
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	4 cut(s)	122, 156, 186, 202
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	2 cut(s)	17, 27
MspI	CCGG	1 cut(s)	8
MvnI	CGCG	1 cut(s)	19
NdeII	GATC	3 cut(s)	10, 44, 106
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	3 cut(s)	6, 215, 324
NmeAIII	GCCGAG	1 cut(s)	115
NspI	RCATGY	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	21, 52, 241
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	6, 215, 324
PspPI	GGNCC	2 cut(s)	87, 214
PstI	CTGCAG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SatI	GCNGC	3 cut(s)	20, 51, 240
Sau3AI	GATC	3 cut(s)	10, 44, 106
Sau96I	GGNCC	2 cut(s)	87, 214
SchI	GAGTC	1 cut(s)	264
SetI	ASST	3 cut(s)	55, 96, 172
SfcI	CTRYAG	1 cut(s)	48
Sse9I	AATT	4 cut(s)	122, 156, 186, 202
SsiI	CCGC	2 cut(s)	19, 199
SspMI	CTAG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	61
TasI	AATT	4 cut(s)	122, 156, 186, 202
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	22
TseI	GCWGC	2 cut(s)	50, 239
TspDTI	ATGAA	4 cut(s)	135, 165, 253, 332
Van91I	CCANNNNNTGG	1 cut(s)	332
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	1 cut(s)	246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.