Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Reverse (-)

14010367 .. 14012054

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCCCCCACCCAGCGACGGAGCTCTGCGTGTCGTAACCAAAATCCCTGGCGATGGAATCGGACCGCTAGTCATGAACGCTGTCGAGAAGGTGATGGAGGCGATGCAGGCGCCGGTCTACTTCGAGAAGTACGATGTCACCGGCAACATGCCGAGGGTGCCGGAGGAGGTGATTGAGTCGATCAGGAAGAACAAGATGTGTCTGAAAGGCGGGCTGGCGACGCCAATGGGCGGCGGCGTTAGCTCGCTGAACATGCAGCTCCGGCGAGATCTCGATCTCTATGCTTCGTTGGTCAACTGCTTCAATCTGCGTGGCTTACAGACCAAGCATGGCAACATCGACATTCTGGTGATCAGGGAGAACACCGAGGGTGAGTACTCGGGGCTCGAGCACGAGATCATTCCTGGAGTTGTTGAAAGCCTTAAAGCTTGGAGGAAAGCAGATGCTGCCTGTGGCTTGCCTCGTAATAGAAGATCTGCTGCTACAGAGAAGGTGGAAGATATAGTTGTGTTGGTAAATTTCTGTTGGTTATTTGATGATAACTTGAATATATCTGAGTGTAAGCAGCTGTCAAAGGAGGAAAGACATGAGGCACGGCACGCTAAAAAGAAATTGAAGAAGGGACTTTACAAGGGTGAAGTGCAGCATTCTCAGAGAGTAGCTGCTATATCTGGCTCTTCTTCCAAACGTATGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

232

Amino Acids

25.75

Weight (kDa)

8.9

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	12 - 136	6.8e-21	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	109, 157
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	4 cut(s)	65, 210, 231, 234
AcsI	RAATTY	1 cut(s)	517
AcyI	GRCGYC	2 cut(s)	110, 221
AfaI	GTAC	2 cut(s)	131, 377
AfiI	CCNNNNNNNGG	3 cut(s)	17, 53, 230
AgsI	TTSAA	4 cut(s)	304, 416, 547, 616
AhdI	GACNNNNNGTC	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	46, 403
AluBI	AGCT	6 cut(s)	23, 243, 259, 428, 568, 662
AluI	AGCT	6 cut(s)	23, 243, 259, 428, 568, 662
Alw21I	GWGCWC	2 cut(s)	25, 393
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	2 cut(s)	379, 386
ApeKI	GCWGC	6 cut(s)	256, 446, 479, 565, 643, 662
ApoI	RAATTY	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	6 cut(s)	103, 130, 181, 361, 383, 647
AvaI	CYCGRG	2 cut(s)	379, 386
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	2 cut(s)	109, 157
BanII	GRGCYC	2 cut(s)	25, 387
BarI	GAAGNNNNNNTAC	2 cut(s)	611, 643
BauI	CACGAG	1 cut(s)	392
Bbv12I	GWGCWC	2 cut(s)	25, 393
BbvI	GCAGC	6 cut(s)	268, 433, 466, 577, 649, 655
BccI	CCATC	2 cut(s)	47, 88
BceAI	ACGGC	1 cut(s)	611
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	2 cut(s)	48, 405
BclI	TGATCA	1 cut(s)	351
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	113
BglII	AGATCT	2 cut(s)	268, 473
BisI	GCNGC	8 cut(s)	232, 235, 257, 447, 480, 566, 644, 663
BlsI	GCNGC	8 cut(s)	233, 236, 258, 448, 481, 567, 645, 664
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	2 cut(s)	48, 405
Bme18I	GGWCC	1 cut(s)	62
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmeT110I	CYCGRG	2 cut(s)	379, 386
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	111, 159
BmrFI	CCNGG	2 cut(s)	48, 405
BmsI	GCATC	2 cut(s)	93, 433
BpmI	CTGGAG	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	273
BsaHI	GRCGYC	2 cut(s)	110, 221
BsaJI	CCNNGG	3 cut(s)	46, 152, 366
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 53, 230
Bse118I	RCCGGY	2 cut(s)	112, 140
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	48, 405
BseDI	CCNNGG	3 cut(s)	46, 152, 366
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	17, 53, 230
BseMII	CTCAG	2 cut(s)	546, 665
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	6 cut(s)	268, 433, 466, 577, 649, 655
BseYI	CCCAGC	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	662
BshNI	GGYRCC	2 cut(s)	109, 157
BsiHKAI	GWGCWC	2 cut(s)	25, 393
BsiHKCI	CYCGRG	2 cut(s)	379, 386
BsiSI	CCGG	4 cut(s)	113, 141, 161, 262
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	3 cut(s)	17, 53, 230
BsmFI	GGGAC	1 cut(s)	636
BsmI	GAATGC	1 cut(s)	646
BsoBI	CYCGRG	2 cut(s)	379, 386
Bsp1286I	GDGCHC	3 cut(s)	25, 387, 393
Bsp143I	GATC	6 cut(s)	180, 268, 274, 351, 396, 473
BspACI	CCGC	4 cut(s)	65, 210, 231, 234
BspCNI	CTCAG	2 cut(s)	547, 664
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	111, 159
BspQI	GCTCTTC	1 cut(s)	682
BspT107I	GGYRCC	2 cut(s)	109, 157
BsrFI	RCCGGY	2 cut(s)	112, 140
BssAI	RCCGGY	2 cut(s)	112, 140
BssECI	CCNNGG	3 cut(s)	46, 152, 366
BssMI	GATC	6 cut(s)	180, 268, 274, 351, 396, 473
BssNI	GRCGYC	2 cut(s)	110, 221
BssSI	CACGAG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	48, 405
Bst6I	CTCTTC	1 cut(s)	682
BstACI	GRCGYC	2 cut(s)	110, 221
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	6 cut(s)	108, 212, 216, 245, 458, 600
BstDEI	CTNAG	2 cut(s)	555, 651
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	6 cut(s)	183, 271, 277, 354, 399, 476
BstMBI	GATC	6 cut(s)	180, 268, 274, 351, 396, 473
BstMWI	GCNNNNNNNGC	8 cut(s)	107, 157, 220, 240, 253, 262, 446, 599
BstNI	CCWGG	2 cut(s)	48, 405
BstNSI	RCATGY	2 cut(s)	151, 256
BstSCI	CCNGG	2 cut(s)	46, 403
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	6 cut(s)	268, 433, 466, 577, 649, 655
BstX2I	RGATCY	2 cut(s)	268, 473
BstYI	RGATCY	2 cut(s)	268, 473
BtgZI	GCGATG	2 cut(s)	66, 116
Cac8I	GCNNGC	6 cut(s)	108, 212, 216, 245, 458, 600
CaiI	CAGNNNCTG	1 cut(s)	446
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	112, 140
Cfr13I	GGNCC	1 cut(s)	62
CpoI	CGGWCCG	1 cut(s)	62
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	130, 376
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CspI	CGGWCCG	1 cut(s)	62
CviAII	CATG	5 cut(s)	73, 148, 253, 329, 587
CviQI	GTAC	2 cut(s)	130, 376
DdeI	CTNAG	2 cut(s)	555, 651
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	6 cut(s)	182, 270, 276, 353, 398, 475
DpnII	GATC	6 cut(s)	180, 268, 274, 351, 396, 473
DriI	GACNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	682
Eam1105I	GACNNNNNGTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	682
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	2 cut(s)	25, 387
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	23
Eco88I	CYCGRG	2 cut(s)	379, 386
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	46, 403
EcoT38I	GRGCYC	2 cut(s)	25, 387
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
FaeI	CATG	5 cut(s)	76, 151, 256, 332, 590
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	5 cut(s)	72, 147, 252, 328, 586
FauI	CCCGC	1 cut(s)	203
FbaI	TGATCA	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	8 cut(s)	232, 235, 257, 447, 480, 566, 644, 663
FriOI	GRGCYC	2 cut(s)	25, 387
Fsp4HI	GCNGC	8 cut(s)	232, 235, 257, 447, 480, 566, 644, 663
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	8 cut(s)	232, 235, 257, 447, 480, 566, 644, 663
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	113
HapII	CCGG	4 cut(s)	113, 141, 161, 262
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	2 cut(s)	110, 221
Hin1II	CATG	5 cut(s)	76, 151, 256, 332, 590
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	2 cut(s)	57, 176
HpaII	CCGG	4 cut(s)	113, 141, 161, 262
HphI	GGTGA	6 cut(s)	103, 130, 181, 361, 383, 647
Hpy166II	GTNNAC	2 cut(s)	118, 295
Hpy188I	TCNGA	4 cut(s)	62, 204, 556, 654
Hpy188III	TCNNGA	5 cut(s)	73, 85, 124, 184, 272
Hpy8I	GTNNAC	2 cut(s)	118, 295
Hpy99I	CGWCG	2 cut(s)	20, 223
HpyAV	CCTTC	3 cut(s)	82, 484, 613
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	3 cut(s)	106, 256, 643
HpyF10VI	GCNNNNNNNGC	8 cut(s)	107, 157, 220, 240, 253, 262, 446, 599
HpyF3I	CTNAG	2 cut(s)	555, 651
HpySE526I	ACGT	1 cut(s)	688
Hsp92I	GRCGYC	2 cut(s)	110, 221
Hsp92II	CATG	5 cut(s)	76, 151, 256, 332, 590
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	6 cut(s)	180, 268, 274, 351, 396, 473
LguI	GCTCTTC	1 cut(s)	682
LmnI	GCTCC	2 cut(s)	20, 264
Lsp1109I	GCAGC	6 cut(s)	268, 433, 466, 577, 649, 655
LweI	GCATC	2 cut(s)	93, 433
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	2 cut(s)	34, 136
MalI	GATC	6 cut(s)	182, 270, 276, 353, 398, 475
MboI	GATC	6 cut(s)	180, 268, 274, 351, 396, 473
MboII	GAAGA	6 cut(s)	199, 483, 509, 628, 669, 672
MflI	RGATCY	2 cut(s)	268, 473
MhlI	GDGCHC	3 cut(s)	25, 387, 393
MluCI	AATT	2 cut(s)	517, 611
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	9 cut(s)	91, 147, 157, 160, 361, 426, 471, 571, 583
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	568
MspI	CCGG	4 cut(s)	113, 141, 161, 262
MspR9I	CCNGG	2 cut(s)	48, 405
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	2 cut(s)	48, 405
MwoI	GCNNNNNNNGC	8 cut(s)	107, 157, 220, 240, 253, 262, 446, 599
NarI	GGCGCC	1 cut(s)	110
NdeII	GATC	6 cut(s)	180, 268, 274, 351, 396, 473
NlaIII	CATG	5 cut(s)	76, 151, 256, 332, 590
NlaIV	GGNNCC	2 cut(s)	111, 159
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	2 cut(s)	151, 256
PaeR7I	CTCGAG	1 cut(s)	386
PagI	TCATGA	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	8 cut(s)	233, 236, 258, 448, 481, 567, 645, 664
PleI	GAGTC	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	46, 403
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	2 cut(s)	46, 403
PspN4I	GGNNCC	2 cut(s)	111, 159
PspPI	GGNCC	1 cut(s)	62
PspXI	VCTCGAGB	1 cut(s)	386
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	268, 473
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	2 cut(s)	131, 377
RsaNI	GTAC	2 cut(s)	130, 376
RseI	CAYNNNNRTG	1 cut(s)	347
Rsr2I	CGGWCCG	1 cut(s)	62
RsrII	CGGWCCG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	25
SapI	GCTCTTC	1 cut(s)	682
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	8 cut(s)	232, 235, 257, 447, 480, 566, 644, 663
Sau3AI	GATC	6 cut(s)	180, 268, 274, 351, 396, 473
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	48, 405
SduI	GDGCHC	3 cut(s)	25, 387, 393
SfaNI	GCATC	2 cut(s)	93, 433
SfcI	CTRYAG	1 cut(s)	483
SfoI	GGCGCC	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	386
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	517, 611
SsiI	CCGC	4 cut(s)	65, 210, 231, 234
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	46, 403
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	6 cut(s)	84, 123, 179, 273, 339, 387
TasI	AATT	2 cut(s)	517, 611
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	2 cut(s)	234, 237
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	6 cut(s)	256, 446, 479, 565, 643, 662
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	2 cut(s)	151, 256
XhoI	CTCGAG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	68
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.