Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021826.1

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 4437

Gene Structure 4437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021826.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 640 bp

atgcaactgtgcaaaattctttatcttgatcagtatccattcgcaaacagacttgttgatccttccatctttattgctaaattttcagggagcagaaaacccagtgggttatgtggtgctgcattatatatatctgcaatttcacatggtctcaagtgttccaagtcagattttgtcaggattgcacatgtttgcgatgcaacgttgaccaagcggctgagtgaatttgagaatacagattctgggagcttgacgattgaagagttccatctgaaggaaagtgagctggacgaattatatgatcaaccaaataggacagttaaaatggataccagagatgacattctttgtgaacacaaggataatggaaaaccttttgcgcttggactttgtaaattttgttatgatgattttgtgacaatttcaggtggacttcatggaggatctaatcctccagctttccagcgtgccgagatagaaagaaggaaaaaagagtctgctcaggagaatgctagtgactctgatgttgatattttaccttgccaaagcctagacaacagtcaacaatcaaattttgaaagagaactgaatggctcaagagctagtgaaaatgggcgattacactctatggagagtgtcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

213

Amino Acids

23.78

Weight (kDa)

5.28

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	214
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	2 cut(s)	53, 451
AcsI	RAATTY	5 cut(s)	15, 80, 224, 395, 571
AcuI	CTGAAG	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	260, 578
AluBI	AGCT	4 cut(s)	249, 286, 458, 602
AluI	AGCT	4 cut(s)	249, 286, 458, 602
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	53, 451
AlwNI	CAGNNNCTG	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	5 cut(s)	15, 80, 224, 395, 571
AspLEI	GCGC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	74, 276
BciVI	GTATCC	2 cut(s)	45, 322
BclI	TGATCA	2 cut(s)	28, 301
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	3 cut(s)	513, 551, 603
BfuI	GTATCC	2 cut(s)	45, 322
BisI	GCNGC	2 cut(s)	120, 215
BlsI	GCNGC	2 cut(s)	121, 216
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	187
BmuI	ACTGGG	1 cut(s)	96
BoxI	GACNNNNGTC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	2 cut(s)	137, 580
BsaBI	GATNNNNATC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	33
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	209, 515
BseNI	ACTGG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	514
Bso31I	GGTCTC	1 cut(s)	155
Bsp143I	GATC	4 cut(s)	28, 58, 301, 443
BspACI	CCGC	1 cut(s)	214
BspCNI	CTCAG	2 cut(s)	210, 514
BspPI	GGATC	2 cut(s)	53, 451
BspTNI	GGTCTC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	102
BssMI	GATC	4 cut(s)	28, 58, 301, 443
Bst4CI	ACNGT	3 cut(s)	9, 319, 560
Bst6I	CTCTTC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	2 cut(s)	218, 501
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	4 cut(s)	31, 61, 304, 446
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	4 cut(s)	28, 58, 301, 443
BstNSI	RCATGY	1 cut(s)	191
BstPAI	GACNNNNGTC	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuI	GTATCC	2 cut(s)	45, 322
BtgZI	GCGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	382
CviAII	CATG	3 cut(s)	146, 188, 437
CviJI	RGCY	7 cut(s)	217, 249, 286, 458, 549, 594, 602
CviKI_1	RGCY	7 cut(s)	217, 249, 286, 458, 549, 594, 602
DdeI	CTNAG	2 cut(s)	218, 501
DpnI	GATC	4 cut(s)	30, 60, 303, 445
DpnII	GATC	4 cut(s)	28, 58, 301, 443
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	293
FaeI	CATG	3 cut(s)	149, 191, 440
FatI	CATG	3 cut(s)	145, 187, 436
FbaI	TGATCA	2 cut(s)	28, 301
Fnu4HI	GCNGC	2 cut(s)	120, 215
Fsp4HI	GCNGC	2 cut(s)	120, 215
FspBI	CTAG	3 cut(s)	513, 551, 603
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	2 cut(s)	120, 215
GsuI	CTGGAG	1 cut(s)	438
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	3 cut(s)	149, 191, 440
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	2 cut(s)	207, 563
HindII	GTYRAC	2 cut(s)	207, 563
HinfI	GANTC	3 cut(s)	239, 494, 518
Hpy166II	GTNNAC	4 cut(s)	207, 353, 431, 563
Hpy188I	TCNGA	3 cut(s)	169, 273, 523
Hpy188III	TCNNGA	4 cut(s)	26, 178, 503, 597
Hpy8I	GTNNAC	4 cut(s)	207, 353, 431, 563
HpyAV	CCTTC	3 cut(s)	72, 268, 477
HpyCH4III	ACNGT	3 cut(s)	9, 319, 560
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	6 cut(s)	4, 12, 122, 137, 185, 200
HpyF3I	CTNAG	2 cut(s)	218, 501
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	149, 191, 440
HspAI	GCGC	1 cut(s)	380
Ksp22I	TGATCA	2 cut(s)	28, 301
Kzo9I	GATC	4 cut(s)	28, 58, 301, 443
LmnI	GCTCC	2 cut(s)	90, 246
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	3 cut(s)	513, 551, 603
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	2 cut(s)	415, 515
MalI	GATC	4 cut(s)	30, 60, 303, 445
MboI	GATC	4 cut(s)	28, 58, 301, 443
MboII	GAAGA	1 cut(s)	272
MflI	RGATCY	1 cut(s)	443
MluCI	AATT	8 cut(s)	15, 80, 138, 224, 293, 395, 420, 571
MlyI	GAGTC	2 cut(s)	503, 512
MnlI	CCTC	2 cut(s)	434, 462
MseI	TTAA	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	514
NdeII	GATC	4 cut(s)	28, 58, 301, 443
NlaIII	CATG	3 cut(s)	149, 191, 440
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	2 cut(s)	415, 515
NspI	RCATGY	1 cut(s)	191
PciI	ACATGT	1 cut(s)	187
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	121, 216
PleI	GAGTC	2 cut(s)	502, 512
PpsI	GAGTC	2 cut(s)	502, 512
PscI	ACATGT	1 cut(s)	187
PshAI	GACNNNNGTC	1 cut(s)	558
Psp1406I	AACGTT	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	2 cut(s)	120, 215
Sau3AI	GATC	4 cut(s)	28, 58, 301, 443
SchI	GAGTC	2 cut(s)	503, 512
SetI	ASST	8 cut(s)	206, 251, 288, 376, 430, 460, 541, 604
SfaNI	GCATC	1 cut(s)	187
SmlI	CTYRAG	2 cut(s)	152, 595
SmoI	CTYRAG	2 cut(s)	152, 595
Sse9I	AATT	8 cut(s)	15, 80, 138, 224, 293, 395, 420, 571
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	3 cut(s)	513, 551, 603
TaaI	ACNGT	3 cut(s)	9, 319, 560
TaiI	ACGT	1 cut(s)	206
TasI	AATT	8 cut(s)	15, 80, 138, 224, 293, 395, 420, 571
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	415, 515
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	2 cut(s)	415, 515
TspDTI	ATGAA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	5 cut(s)	15, 80, 224, 395, 571
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	3 cut(s)	513, 551, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.