Rroxscaffold_2G00115130

X-Pro dipeptidyl-peptidase (S15 family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000772
Physical Location & Seq
Reverse (-)
41354413 .. 41366826
12414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115130.1

Sequence Viewer

Length: 783 bp
ATGTTGGCAATAAGTCCCTACCCCTGTTGTGGTTGGGCAACGTGGGCTCTGTCCCGGATTGCACACCTTGTGTGCCTTGTTTGCCCTAGTTGGGCGGCAAGTTCCTTGCAACCTCCTAGTGGCAGGATGGAACTAAGTATCATCGAATTTGCTTTTCGGTGGCAACGAGTGGGAAAGAGTTGGAAGGTCAACGGGAAGGCTTCTCTTACTAGGTTTACAGAAATCAAGGATGTGATGTACGTACGCAAATTGGCCTCTAAGAATTTGTCCGATAATAGAATTTTGTTTGTGGGTTCTTCTGCAAGTTTAGGTAACCAAGCAAGCAAACCAATCCTATCTCTAGGTGATTTTAGCTCACTACCCTCACATGTACACATGGTGTGCTTTCATGCTCCCTTTTTTCCTAAAGGTTTCAATCTCAAGCGTGGGCTAGGAAAGGTGGAAGGGAGGTGGATGTCGGGGGTGGGTAGATCGATTTCGATCGACTTTCTATGGTCGTGGGCGAAATCGGGTGCGAGCGGCGCCGGGGTGGGGTTGACCGGCGACGGATCGGGTTCCCCTATCGGTGGTGATTCCAAAAGGGATTTGCTACTCTTTGGGGTTCGATCACCGATTTGGGCAATCTATGGAAGTTGGTGGTGTGGTTGGATGGCACCGGATCTTTCGCGGTGGGGTTGGCGGCGGAATGAGCGATTTGTAGCTGCGGCGTTCTTGGATTGGAAGATTGGTGGTTGGGCGGGCTTGGAGGGAGGGATCTTGGTAATTCGGCGGTGGTTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

260

Amino Acids

28.7

Weight (kDa)

10.13

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 521, 652
AccBSI CCGCTC 1 cut(s) 519
AccII CGCG 1 cut(s) 667
AciI CCGC 8 cut(s) 95, 519, 667, 679, 682, 704, 737, 769
AclWI GGATC 3 cut(s) 556, 666, 761
AcsI RAATTY 3 cut(s) 146, 262, 279
AcyI GRCGYC 1 cut(s) 522
AdeI CACNNNGTG 2 cut(s) 70, 379
AfaI GTAC 3 cut(s) 239, 243, 372
AfiI CCNNNNNNNGG 5 cut(s) 29, 91, 119, 531, 566
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 1 cut(s) 415
AluBI AGCT 2 cut(s) 354, 701
AluI AGCT 2 cut(s) 354, 701
AlwI GGATC 3 cut(s) 556, 666, 761
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 701
ApoI RAATTY 3 cut(s) 146, 262, 279
AspLEI GCGC 1 cut(s) 524
AsuC2I CCSGG 2 cut(s) 55, 526
AsuHPI GGTGA 3 cut(s) 356, 581, 600
BanI GGYRCC 2 cut(s) 521, 652
BanII GRGCYC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 688
BccI CCATC 2 cut(s) 121, 643
BcnI CCSGG 2 cut(s) 55, 526
BfaI CTAG 6 cut(s) 87, 117, 210, 341, 431, 781
BfoI RGCGCY 1 cut(s) 525
BisI GCNGC 5 cut(s) 96, 520, 680, 702, 705
BlsI GCNGC 5 cut(s) 97, 521, 681, 703, 706
Bme1390I CCNGG 2 cut(s) 55, 526
BmiI GGNNCC 3 cut(s) 523, 556, 654
BmrFI CCNGG 2 cut(s) 55, 526
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 55, 526
Bsa29I ATCGAT 1 cut(s) 473
BsaAI YACGTR 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 479
BsaHI GRCGYC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 525
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 91, 119, 531, 566
Bse118I RCCGGY 1 cut(s) 539
Bse8I GATNNNNATC 1 cut(s) 479
BseCI ATCGAT 1 cut(s) 473
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 4 cut(s) 132, 235, 459, 654
BseJI GATNNNNATC 1 cut(s) 479
BseLI CCNNNNNNNGG 5 cut(s) 29, 91, 119, 531, 566
BseXI GCAGC 1 cut(s) 688
Bsh1236I CGCG 1 cut(s) 667
Bsh1285I CGRYCG 1 cut(s) 483
BshFI GGCC 1 cut(s) 254
BshNI GGYRCC 2 cut(s) 521, 652
BshVI ATCGAT 1 cut(s) 473
BsiEI CGRYCG 1 cut(s) 483
BsiSI CCGG 4 cut(s) 55, 525, 540, 656
BsiWI CGTACG 1 cut(s) 241
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 5 cut(s) 29, 91, 119, 531, 566
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 49
Bsp1407I TGTACA 1 cut(s) 370
Bsp143I GATC 6 cut(s) 470, 480, 548, 605, 658, 753
BspACI CCGC 8 cut(s) 95, 519, 667, 679, 682, 704, 737, 769
BspANI GGCC 1 cut(s) 254
BspDI ATCGAT 1 cut(s) 473
BspFNI CGCG 1 cut(s) 667
BspLI GGNNCC 3 cut(s) 523, 556, 654
BspPI GGATC 3 cut(s) 556, 666, 761
BspT107I GGYRCC 2 cut(s) 521, 652
BsrBI CCGCTC 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 539
BsrGI TGTACA 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 6 cut(s) 470, 480, 548, 605, 658, 753
BssNI GRCGYC 1 cut(s) 522
BstACI GRCGYC 1 cut(s) 522
BstAUI TGTACA 1 cut(s) 370
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 3 cut(s) 322, 517, 739
BstDEI CTNAG 2 cut(s) 134, 258
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 4 cut(s) 132, 235, 459, 654
BstFNI CGCG 1 cut(s) 667
BstH2I RGCGCY 1 cut(s) 525
BstHHI GCGC 1 cut(s) 524
BstKTI GATC 6 cut(s) 473, 483, 551, 608, 661, 756
BstMBI GATC 6 cut(s) 470, 480, 548, 605, 658, 753
BstMCI CGRYCG 1 cut(s) 483
BstMWI GCNNNNNNNGC 4 cut(s) 44, 81, 521, 688
BstNSI RCATGY 1 cut(s) 371
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 53, 524
BstSNI TACGTA 1 cut(s) 241
BstUI CGCG 1 cut(s) 667
BstV1I GCAGC 1 cut(s) 688
BstX2I RGATCY 2 cut(s) 658, 753
BstYI RGATCY 2 cut(s) 658, 753
Bsu15I ATCGAT 1 cut(s) 473
BsuRI GGCC 1 cut(s) 254
BsuTUI ATCGAT 1 cut(s) 473
BtsCI GGATG 4 cut(s) 132, 235, 459, 654
Cac8I GCNNGC 3 cut(s) 322, 517, 739
CfoI GCGC 1 cut(s) 524
Cfr10I RCCGGY 1 cut(s) 539
ClaI ATCGAT 1 cut(s) 473
Csp6I GTAC 3 cut(s) 238, 242, 371
CviAII CATG 3 cut(s) 368, 376, 389
CviJI RGCY 7 cut(s) 47, 200, 254, 354, 430, 701, 741
CviKI_1 RGCY 7 cut(s) 47, 200, 254, 354, 430, 701, 741
CviQI GTAC 3 cut(s) 238, 242, 371
DdeI CTNAG 2 cut(s) 134, 258
DinI GGCGCC 1 cut(s) 523
DpnI GATC 6 cut(s) 472, 482, 550, 607, 660, 755
DpnII GATC 6 cut(s) 470, 480, 548, 605, 658, 753
DraIII CACNNNGTG 2 cut(s) 70, 379
EciI GGCGGA 1 cut(s) 697
Eco105I TACGTA 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 49
Eco91I GGTNACC 1 cut(s) 311
EcoO65I GGTNACC 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 49
EgeI GGCGCC 1 cut(s) 523
EheI GGCGCC 1 cut(s) 523
FaeI CATG 3 cut(s) 371, 379, 392
FaiI YATR 5 cut(s) 369, 377, 390, 493, 627
FaqI GGGAC 1 cut(s) 37
FatI CATG 3 cut(s) 367, 375, 388
FauI CCCGC 1 cut(s) 730
Fnu4HI GCNGC 5 cut(s) 96, 520, 680, 702, 705
FokI GGATG 4 cut(s) 139, 242, 466, 661
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 5 cut(s) 96, 520, 680, 702, 705
FspBI CTAG 6 cut(s) 87, 117, 210, 341, 431, 781
GlaI GCGC 1 cut(s) 523
GluI GCNGC 5 cut(s) 96, 520, 680, 702, 705
HaeII RGCGCY 1 cut(s) 525
HaeIII GGCC 1 cut(s) 254
HapII CCGG 4 cut(s) 55, 525, 540, 656
HhaI GCGC 1 cut(s) 524
Hin1I GRCGYC 1 cut(s) 522
Hin1II CATG 3 cut(s) 371, 379, 392
Hin6I GCGC 1 cut(s) 522
HinP1I GCGC 1 cut(s) 522
HincII GTYRAC 2 cut(s) 190, 537
HindII GTYRAC 2 cut(s) 190, 537
HinfI GANTC 1 cut(s) 572
HpaII CCGG 4 cut(s) 55, 525, 540, 656
HphI GGTGA 3 cut(s) 356, 581, 600
Hpy166II GTNNAC 4 cut(s) 190, 216, 373, 537
Hpy188I TCNGA 1 cut(s) 271
Hpy8I GTNNAC 4 cut(s) 190, 216, 373, 537
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 3 cut(s) 178, 190, 437
HpyCH4IV ACGT 2 cut(s) 41, 240
HpyCH4V TGCA 3 cut(s) 62, 109, 302
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 81, 521, 688
HpyF3I CTNAG 2 cut(s) 134, 258
HpySE526I ACGT 2 cut(s) 41, 240
Hsp92I GRCGYC 1 cut(s) 522
Hsp92II CATG 3 cut(s) 371, 379, 392
HspAI GCGC 1 cut(s) 522
KasI GGCGCC 1 cut(s) 521
Kzo9I GATC 6 cut(s) 470, 480, 548, 605, 658, 753
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 6 cut(s) 37, 68, 109, 538, 553, 669
Lsp1109I GCAGC 1 cut(s) 688
MaeI CTAG 6 cut(s) 87, 117, 210, 341, 431, 781
MaeII ACGT 2 cut(s) 41, 240
MaeIII GTNAC 1 cut(s) 311
MalI GATC 6 cut(s) 472, 482, 550, 607, 660, 755
MbiI CCGCTC 1 cut(s) 519
MboI GATC 6 cut(s) 470, 480, 548, 605, 658, 753
MboII GAAGA 2 cut(s) 288, 733
MflI RGATCY 2 cut(s) 658, 753
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 5 cut(s) 146, 248, 262, 279, 762
Mly113I GGCGCC 1 cut(s) 522
MmeI TCCRAC 2 cut(s) 161, 626
MnlI CCTC 6 cut(s) 123, 265, 373, 441, 739, 743
MspI CCGG 4 cut(s) 55, 525, 540, 656
MspR9I CCNGG 2 cut(s) 55, 526
MvnI CGCG 1 cut(s) 667
MwoI GCNNNNNNNGC 4 cut(s) 44, 81, 521, 688
NarI GGCGCC 1 cut(s) 522
NciI CCSGG 2 cut(s) 55, 526
NdeII GATC 6 cut(s) 470, 480, 548, 605, 658, 753
NlaIII CATG 3 cut(s) 371, 379, 392
NlaIV GGNNCC 3 cut(s) 523, 556, 654
NspI RCATGY 1 cut(s) 371
PciI ACATGT 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PfeI GAWTC 1 cut(s) 572
Pfl23II CGTACG 1 cut(s) 241
PfoI TCCNGGA 1 cut(s) 53
PkrI GCNGC 5 cut(s) 97, 521, 681, 703, 706
Ple19I CGATCG 1 cut(s) 483
PluTI GGCGCC 1 cut(s) 525
Ppu21I YACGTR 1 cut(s) 241
PscI ACATGT 1 cut(s) 367
PspEI GGTNACC 1 cut(s) 311
PspLI CGTACG 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 523, 556, 654
PsuI RGATCY 2 cut(s) 658, 753
PvuI CGATCG 1 cut(s) 483
RsaI GTAC 3 cut(s) 239, 243, 372
RsaNI GTAC 3 cut(s) 238, 242, 371
SatI GCNGC 5 cut(s) 96, 520, 680, 702, 705
Sau3AI GATC 6 cut(s) 470, 480, 548, 605, 658, 753
ScrFI CCNGG 2 cut(s) 55, 526
SduI GDGCHC 1 cut(s) 49
SfoI GGCGCC 1 cut(s) 523
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SnaBI TACGTA 1 cut(s) 241
Sse9I AATT 5 cut(s) 146, 248, 262, 279, 762
SsiI CCGC 8 cut(s) 95, 519, 667, 679, 682, 704, 737, 769
SspDI GGCGCC 1 cut(s) 521
SspMI CTAG 6 cut(s) 87, 117, 210, 341, 431, 781
StyD4I CCNGG 2 cut(s) 53, 524
TaiI ACGT 2 cut(s) 44, 243
TaqI TCGA 5 cut(s) 144, 473, 479, 483, 604
TasI AATT 5 cut(s) 146, 248, 262, 279, 762
TatI WGTACW 1 cut(s) 370
TauI GCSGC 4 cut(s) 98, 522, 682, 707
TfiI GAWTC 1 cut(s) 572
TseI GCWGC 1 cut(s) 701
TspDTI ATGAA 2 cut(s) 377, 766
TspGWI ACGGA 1 cut(s) 561
XapI RAATTY 3 cut(s) 146, 262, 279
XceI RCATGY 1 cut(s) 371
XspI CTAG 6 cut(s) 87, 117, 210, 341, 431, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.