Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Forward (+)

23182033 .. 23195306

Gene Structure 13274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32090.t12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGTGTTCTGTAACAATTGCAGCAAAAGCGTCCCCGGAACAGAAGATAGTGGCAGAATATGGTGTGATATGTGCGGCAAGGTCTTAGTGTATGACATTTACTCTGAAGAGCCCACTTTTTTCAAAGATGCCGCCGGCCAGAGCAAACTGTCTGGGAATTTCGTGCGGGGTTTCCAGAGTGAGGTCTCGGCTTCTCGCGAGAGGCTGATCGATAATGCCAGATATGAATTGAGATGCCTAAGAAATGGTTTAGAGATGGGGGAGAATGAAGAAATTACTGACATAGCTCTGCGTTTCTACACGATGGCGCTTGAGAGGAATTTCACAAGGGGGCGTAACACAGAGCAAGTACTGGCTGCATGTTTATACATTGCATGTCGGACAAAGAGGAAGCCATATCTTCTTATTGAGTTCTCAAACTTCTTGAAGATAGATGTTTACACACTAGGTGCGGTATATATGCAACTGTCCAAAGTTCTTTATCTTGATGAGTTTCCATTTGCGAGCCTACCTGTTGATCCTTCCATATTTATCGCTAAATTTTCAGAGAGTTTACCAGGAGGAAGGAATAAAGGAGTTACTAAGACTGCAGTGCGGATTATCAATAGCATGAAACGGAATTGGATGCAGACAGGAAGAAAACCCAGTGGGTTATGTGGTGCTGCATTATATATATCTGCACTTTCACATGGTCTCAAGTGTTCCAAGTCAGATTTTGTCAGGATCGCACATGTTTGCGATGCAACATTGACCAAGCGGCTGATTGAATTTGTGAATACAGATTCTGGGAGCTTGACGATTGAAGAGTTCCATCTGAAGGAAAGTGAGATGGAAGAATTATGTGAAGAACCAAATACGGCAGTTAAAATTGATAGTGGAGATGACATTCTTTGTGTACACAAGGATAGTGGAATACCTTTTGCTCATGGACTTTGTAAATTATGTTATGACGATGTGGACTTCGTGGAGGATCTGATCCTCCCTCTTTCCAGCGTGCTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

335

Amino Acids

37.52

Weight (kDa)

5.7

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIB	PF00382	72 - 157	1e-15	Transcription factor TFIIB repeat
TFIIB	PF00382	172 - 259	1.4e-15	Transcription factor TFIIB repeat
BRF1	PF07741	417 - 505	7.9e-16	Brf1-like TBP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	198
AciI	CCGC	6 cut(s)	75, 132, 166, 452, 595, 757
AclWI	GGATC	4 cut(s)	512, 731, 970, 978
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	4 cut(s)	157, 319, 539, 767
AcuI	CTGAAG	2 cut(s)	126, 836
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	2 cut(s)	351, 897
AfiI	CCNNNNNNNGG	2 cut(s)	181, 817
AflIII	ACRYGT	1 cut(s)	730
AgsI	TTSAA	4 cut(s)	124, 427, 767, 803
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	2 cut(s)	287, 792
AluI	AGCT	2 cut(s)	287, 792
Alw26I	GTCTC	2 cut(s)	190, 698
AlwI	GGATC	4 cut(s)	512, 731, 970, 978
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	21, 356, 662
ApoI	RAATTY	4 cut(s)	157, 319, 539, 767
AspLEI	GCGC	1 cut(s)	310
AsuC2I	CCSGG	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	33, 343, 649
BccI	CCATC	4 cut(s)	250, 298, 819, 823
BceAI	ACGGC	1 cut(s)	873
BciT130I	CCWGG	1 cut(s)	558
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	190, 698
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	1 cut(s)	311
BisI	GCNGC	6 cut(s)	22, 76, 132, 357, 663, 758
BlsI	GCNGC	6 cut(s)	23, 77, 133, 358, 664, 759
BmcAI	AGTACT	1 cut(s)	351
Bme1390I	CCNGG	2 cut(s)	36, 558
BmrFI	CCNGG	2 cut(s)	36, 558
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	4 cut(s)	118, 224, 615, 730
BmuI	ACTGGG	1 cut(s)	639
BpuEI	CTTGAG	2 cut(s)	332, 680
BpuMI	CCSGG	1 cut(s)	36
Bsa29I	ATCGAT	1 cut(s)	210
BsaI	GGTCTC	2 cut(s)	190, 698
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 817
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	357, 645
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	558
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	630
BseLI	CCNNNNNNNGG	2 cut(s)	181, 817
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	989
BseNI	ACTGG	2 cut(s)	357, 645
BseXI	GCAGC	3 cut(s)	33, 343, 649
BsgI	GTGCAG	1 cut(s)	663
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	36, 135
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	181, 817
BsmAI	GTCTC	2 cut(s)	190, 698
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	138
Bso31I	GGTCTC	2 cut(s)	190, 698
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp1407I	TGTACA	1 cut(s)	895
Bsp143I	GATC	5 cut(s)	207, 517, 723, 970, 975
Bsp68I	TCGCGA	1 cut(s)	198
BspACI	CCGC	6 cut(s)	75, 132, 166, 452, 595, 757
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	990
BspDI	ATCGAT	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	4 cut(s)	512, 731, 970, 978
BspQI	GCTCTTC	1 cut(s)	102
BspTNI	GGTCTC	2 cut(s)	190, 698
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	134
BsrGI	TGTACA	1 cut(s)	895
BsrI	ACTGG	2 cut(s)	357, 645
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	5 cut(s)	207, 517, 723, 970, 975
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	150, 468
Bst6I	CTCTTC	2 cut(s)	102, 798
BstAUI	TGTACA	1 cut(s)	895
BstC8I	GCNNGC	3 cut(s)	136, 505, 995
BstDEI	CTNAG	4 cut(s)	85, 239, 582, 998
BstF5I	GGATG	1 cut(s)	630
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	5 cut(s)	210, 520, 726, 973, 978
BstMAI	GTCTC	2 cut(s)	190, 698
BstMBI	GATC	5 cut(s)	207, 517, 723, 970, 975
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	3 cut(s)	363, 378, 734
BstSCI	CCNGG	2 cut(s)	34, 556
BstSFI	CTRYAG	1 cut(s)	588
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	33, 343, 649
BstX2I	RGATCY	1 cut(s)	970
BstYI	RGATCY	1 cut(s)	970
Bsu15I	ATCGAT	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	753
BtsCI	GGATG	1 cut(s)	630
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	597, 652
BtuMI	TCGCGA	1 cut(s)	198
Cac8I	GCNNGC	3 cut(s)	136, 505, 995
CaiI	CAGNNNCTG	1 cut(s)	785
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	134
ClaI	ATCGAT	1 cut(s)	210
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	350, 896
CspCI	CAANNNNNGTGG	2 cut(s)	889, 924
CviAII	CATG	6 cut(s)	360, 375, 610, 689, 731, 926
CviQI	GTAC	2 cut(s)	350, 896
DdeI	CTNAG	4 cut(s)	85, 239, 582, 998
DpnI	GATC	5 cut(s)	209, 519, 725, 972, 977
DpnII	GATC	5 cut(s)	207, 517, 723, 970, 975
DraIII	CACNNNGTG	1 cut(s)	449
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	102, 798
EarI	CTCTTC	2 cut(s)	102, 798
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	2 cut(s)	190, 698
Eco57I	CTGAAG	2 cut(s)	126, 836
EcoRII	CCWGG	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	6 cut(s)	363, 378, 613, 692, 734, 929
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	6 cut(s)	359, 374, 609, 688, 730, 925
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	6 cut(s)	22, 76, 132, 357, 663, 758
FokI	GGATG	1 cut(s)	637
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	6 cut(s)	22, 76, 132, 357, 663, 758
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	6 cut(s)	22, 76, 132, 357, 663, 758
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	2 cut(s)	36, 135
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	6 cut(s)	363, 378, 613, 692, 734, 929
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	1 cut(s)	782
HpaII	CCGG	2 cut(s)	36, 135
Hpy166II	GTNNAC	5 cut(s)	439, 554, 896, 898, 958
Hpy188I	TCNGA	6 cut(s)	106, 381, 547, 712, 816, 975
Hpy188III	TCNNGA	5 cut(s)	175, 197, 424, 485, 721
Hpy8I	GTNNAC	5 cut(s)	439, 554, 896, 898, 958
HpyAV	CCTTC	3 cut(s)	531, 558, 811
HpyCH4III	ACNGT	2 cut(s)	150, 468
HpyCH4V	TGCA	9 cut(s)	21, 359, 374, 463, 590, 628, 665, 680, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	4 cut(s)	85, 239, 582, 998
Hsp92II	CATG	6 cut(s)	363, 378, 613, 692, 734, 929
HspAI	GCGC	1 cut(s)	308
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	5 cut(s)	207, 517, 723, 970, 975
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	789
Lsp1109I	GCAGC	3 cut(s)	33, 343, 649
LweI	GCATC	4 cut(s)	118, 224, 615, 730
MaeI	CTAG	1 cut(s)	446
MaeIII	GTNAC	3 cut(s)	11, 335, 577
MalI	GATC	5 cut(s)	209, 519, 725, 972, 977
MboI	GATC	5 cut(s)	207, 517, 723, 970, 975
MboII	GAAGA	9 cut(s)	56, 119, 281, 392, 439, 648, 815, 845, 857
MfeI	CAATTG	1 cut(s)	16
MflI	RGATCY	1 cut(s)	970
MhlI	GDGCHC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	8 cut(s)	175, 195, 309, 381, 554, 961, 989, 993
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	1 cut(s)	864
MspI	CCGG	2 cut(s)	36, 135
MspR9I	CCNGG	2 cut(s)	36, 558
MunI	CAATTG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	27
NaeI	GCCGGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	5 cut(s)	207, 517, 723, 970, 975
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	6 cut(s)	363, 378, 613, 692, 734, 929
NmeAIII	GCCGAG	1 cut(s)	167
NruI	TCGCGA	1 cut(s)	198
NspI	RCATGY	3 cut(s)	363, 378, 734
PciI	ACATGT	1 cut(s)	730
PciSI	GCTCTTC	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	782
PkrI	GCNGC	6 cut(s)	23, 77, 133, 358, 664, 759
PscI	ACATGT	1 cut(s)	730
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	970
RruI	TCGCGA	1 cut(s)	198
RsaI	GTAC	2 cut(s)	351, 897
RsaNI	GTAC	2 cut(s)	350, 896
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	864
SatI	GCNGC	6 cut(s)	22, 76, 132, 357, 663, 758
Sau3AI	GATC	5 cut(s)	207, 517, 723, 970, 975
ScaI	AGTACT	1 cut(s)	351
ScrFI	CCNGG	2 cut(s)	36, 558
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	7 cut(s)	84, 186, 289, 451, 514, 794, 919
SfaNI	GCATC	4 cut(s)	118, 224, 615, 730
SfcI	CTRYAG	1 cut(s)	588
SmlI	CTYRAG	2 cut(s)	311, 695
SmoI	CTYRAG	2 cut(s)	311, 695
SsiI	CCGC	6 cut(s)	75, 132, 166, 452, 595, 757
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	34, 556
TaaI	ACNGT	2 cut(s)	150, 468
TaqI	TCGA	1 cut(s)	210
TatI	WGTACW	2 cut(s)	349, 895
TauI	GCSGC	3 cut(s)	78, 134, 760
TfiI	GAWTC	1 cut(s)	782
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TscAI	CASTG	2 cut(s)	597, 652
TseI	GCWGC	3 cut(s)	21, 356, 662
TspDTI	ATGAA	3 cut(s)	240, 282, 626
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	2 cut(s)	597, 652
XapI	RAATTY	4 cut(s)	157, 319, 539, 767
XceI	RCATGY	3 cut(s)	363, 378, 734
XspI	CTAG	1 cut(s)	446
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.