Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001526.1

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Forward (+)

35583 .. 36159

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001526.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atgttcgaaacatctgaggctcctgatgtctcccagaaaagaaaatttgattcacaacttgacaatgacaacaagatgccccatgacagtgaagagcttgaatttgatgcatgcaaagatgatgacttggatatggaacatgaatatggggatgaagaaggaattgaaggaacaggcttcaacaattacggttatgttgatgaagtagacgagtacaatgatcgtgattatgatgatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

80

Amino Acids

9.42

Weight (kDa)

4.05

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	44, 101
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	101, 167, 181
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	34
ApoI	RAATTY	2 cut(s)	44, 101
AsuII	TTCGAA	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	21
BmsI	GCATC	2 cut(s)	66, 97
Bpu14I	TTCGAA	1 cut(s)	6
BseGI	GGATG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	6
Bsp143I	GATC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	87
BspT104I	TTCGAA	1 cut(s)	6
BssMI	GATC	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	89, 191
Bst6I	CTCTTC	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	3 cut(s)	83, 111, 140
CviJI	RGCY	3 cut(s)	20, 97, 177
CviKI_1	RGCY	3 cut(s)	20, 97, 177
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	112
FaeI	CATG	3 cut(s)	86, 114, 143
FaiI	YATR	7 cut(s)	84, 112, 134, 141, 147, 195, 231
FatI	CATG	3 cut(s)	82, 110, 139
FblI	GTMKAC	1 cut(s)	207
FokI	GGATG	1 cut(s)	164
Hin1II	CATG	3 cut(s)	86, 114, 143
HinfI	GANTC	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	16, 242
Hpy188III	TCNNGA	2 cut(s)	23, 224
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	152, 161
HpyCH4III	ACNGT	2 cut(s)	89, 191
HpyCH4V	TGCA	2 cut(s)	110, 114
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	86, 114, 143
Kzo9I	GATC	1 cut(s)	220
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	3 cut(s)	36, 47, 159
LweI	GCATC	2 cut(s)	66, 97
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	104, 167
MluCI	AATT	4 cut(s)	44, 101, 162, 184
MnlI	CCTC	1 cut(s)	10
Mph1103I	ATGCAT	1 cut(s)	112
MslI	CAYNNNNRTG	2 cut(s)	87, 144
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	3 cut(s)	86, 114, 143
NlaIV	GGNNCC	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	114
NspV	TTCGAA	1 cut(s)	6
PaeI	GCATGC	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	21
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	2 cut(s)	87, 144
SapI	GCTCTTC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	220
SetI	ASST	1 cut(s)	99
SfaNI	GCATC	2 cut(s)	66, 97
SfuI	TTCGAA	1 cut(s)	6
SmiMI	CAYNNNNRTG	2 cut(s)	87, 144
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	4 cut(s)	44, 101, 162, 184
TaaI	ACNGT	2 cut(s)	89, 191
TaqI	TCGA	1 cut(s)	6
TasI	AATT	4 cut(s)	44, 101, 162, 184
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	50
TscAI	CASTG	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	156, 168, 216
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	2 cut(s)	44, 101
XceI	RCATGY	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.