Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Reverse (-)

31571318 .. 31584912

Gene Structure 13595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

ATGGTATGGTGTACTTTCTGTGTCAAAAATGTTGAAGGAACCAGCGATGCTGGTAGACTATGGTGTTCCGGATGCGGCAAGGTTTTAGAGGATCACATTTTCTCTGAGGAACCCACTTTCGTTAAGAATGCGGCGGGCCAGAGCCAATTGGCTGGAAGATATGTACGCTCCAGGGAAAGCGAAATCTCAGCTTCTCGCGAAAGGATACTCGAAAATGCCGAATATGAATTGAGATCTATGAGAAATGCTTTAGATATGGGAGACAACGAAGAAATTATTGACATAGCTAAACGCTTTTATAGAATTGCGATTGAGCGGAATTTCACAAGGGGCCGTAAATCAGAGCAAGTACAGGCTGCATGTCTTTACATTGCATGTCGGGAAAAGAAGAAGCCATATCTTCTCATTGATTTTTCGAACTACTTGAAGATAAATGTCTATGTGCTGGGAGCTGTGTTTTTGCAACTTTGCAAGGCTCTGAGGCTTGATGAGCACCCAATTGTTCAAAAACTTGTTGATCCTTCCTGGTTTATTCATAGATTTGCTGAGATGTTGGTTCTGTCTCTGCGACAGAAGTATCAACTCCAAAAACTTGAGGTTTACCAGGAGGAAGGGATACCAGGAGGAAGGGATAAAGGGGTTATGCAAAGGATTATCACAAGCATGAAACGGGATTGGATGCAGACAGGCAGAAAACCCAGTGGACTATGTGGTGCTGCATTATATATATCAGCACTTTCACACGGTCTCAAGTGCTCCAAATCTGATATTATCAAAATTGTACATGTTTGTGATGCTACATTGACTAAGCGGCTGGTTGAATTTGAGAATACAGAATCTGGGAGCTTGACGATTGAAGAGTTCCTCGTGAAGGCAAAGGAACAGGATGAAGTAAGCAAACAACCAATTATGGCTGATAAAATGGATAATACAGATGGTGGCCTTTGTGAACACAAGATCCTTTGTGAACATAAGGATAGTGGAAAACCTTTTGCGTATGGACTTTGTGGACTTGACGGAGGATCTAATCCTCCTGCTTTCCAGCGTGCTGAAATAGAGAGATTGAAAAAAGCATCTGCGGAGCTTAATGCTAATGACTTGGGCATCGATACCATTGCTTGTCAAAGCCTTGACAACAGTGATCAGTCATCCAAGTTTGAGAAAGAGAACAACACAAAATCAGGAAGTGAGAATAAAGGACTGCTGCTTATGGAGCCTGAAAGTGATGGGGCTGCTATGGAGAATACAGCTGTTGAGACCGGAACTGAAGCTTGTGATGATGAGTCTGACAACTTTTCAGATATTGATGATCTGGAGGTTGACGGCTACCTTCTTAATGAAGAGGGGAAACGCTACAAAAAGATGATTTGGGAAGAAATGAATCATCTGCATGGCCCCTATGCGAAAGTGAAGAAGAATATATTTCATTGCAATGGCCTCAGTTGGGGAGCAAGCAGCAAGGAGGAAGCAGCTAAGGCTGCTATGGATATCAATTGTCCAGAAGGTGCAAAGAAACTTGCGCAAAATACTGAAGCAGCTGTTGCCAAGAGAAAAAAGAGACTCAGCTCAAAAATCAACTTTGATGTCCTGGAGAATATGTTCGAAACATCTGAGGCTCCTGATGTCTCCCAGAAAAGAAAATTTGATTCACATCTTGACAATGACAACAAGATGCCCCATGACAGTGAAGAGCTTGAATTTGATGCATACAAAGATGATGACTTGGGTATGGAACATGAATATGAGGATGAAGAAGGAATTGAAGGAACAGGCTTCAACAATTACGGTTATGTTGATGAAGTAGACGAGTACAATGATCGTGATTATGATGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

612

Amino Acids

69.17

Weight (kDa)

4.97

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIB	PF00382	69 - 158	2e-16	Transcription factor TFIIB repeat
TFIIB	PF00382	217 - 277	8.2e-12	Transcription factor TFIIB repeat
BRF1	PF07741	433 - 535	4.4e-10	Brf1-like TBP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1521
AccBSI	CCGCTC	1 cut(s)	316
AccI	GTMKAC	2 cut(s)	55, 1803
AccII	CGCG	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	6 cut(s)	75, 131, 134, 316, 811, 1079
AclWI	GGATC	4 cut(s)	99, 512, 952, 1030
AcsI	RAATTY	4 cut(s)	319, 821, 1640, 1697
AcuI	CTGAAG	2 cut(s)	1287, 1551
AfaI	GTAC	5 cut(s)	13, 165, 351, 783, 1811
AfiI	CCNNNNNNNGG	2 cut(s)	871, 1444
AflIII	ACRYGT	1 cut(s)	784
AgsI	TTSAA	9 cut(s)	35, 427, 506, 821, 857, 1066, 1697, 1763, 1777
AjnI	CCWGG	5 cut(s)	170, 524, 603, 619, 1587
AloI	GAACNNNNNNTCC	4 cut(s)	942, 974, 1583, 1615
Alw21I	GWGCWC	2 cut(s)	495, 758
Alw26I	GTCTC	6 cut(s)	255, 567, 752, 1250, 1552, 1630
AlwI	GGATC	4 cut(s)	99, 512, 952, 1030
AlwNI	CAGNNNCTG	1 cut(s)	839
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	5 cut(s)	136, 331, 940, 1393, 1435
ApeKI	GCWGC	8 cut(s)	356, 716, 1204, 1232, 1455, 1469, 1478, 1535
ApoI	RAATTY	4 cut(s)	319, 821, 1640, 1697
Asp700I	GAANNNNTTC	1 cut(s)	1598
AspLEI	GCGC	1 cut(s)	1522
AspS9I	GGNCC	3 cut(s)	136, 331, 1394
AsuII	TTCGAA	2 cut(s)	416, 1602
BaeI	ACNNNNGTAYC	2 cut(s)	560, 593
BauI	CACGAG	1 cut(s)	866
Bbv12I	GWGCWC	2 cut(s)	495, 758
BbvI	GCAGC	8 cut(s)	343, 703, 1191, 1219, 1465, 1467, 1481, 1547
BccI	CCATC	2 cut(s)	929, 1220
BceAI	ACGGC	2 cut(s)	318, 1339
BcgI	CGANNNNNNTGC	2 cut(s)	1097, 1131
BciT130I	CCWGG	5 cut(s)	172, 526, 605, 621, 1589
BciVI	GTATCC	2 cut(s)	198, 609
BclI	TGATCA	1 cut(s)	1141
BcoDI	GTCTC	6 cut(s)	255, 567, 752, 1250, 1552, 1630
BfuI	GTATCC	2 cut(s)	198, 609
BglII	AGATCT	1 cut(s)	233
Bme1390I	CCNGG	5 cut(s)	172, 526, 605, 621, 1589
BmgT120I	GGNCC	3 cut(s)	136, 331, 1394
BmiI	GGNNCC	6 cut(s)	40, 111, 332, 1215, 1396, 1617
BmrFI	CCNGG	5 cut(s)	172, 526, 605, 621, 1589
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	8 cut(s)	37, 62, 669, 784, 1082, 1113, 1662, 1693
BmuI	ACTGGG	1 cut(s)	693
BpmI	CTGGAG	3 cut(s)	154, 1334, 1610
Bpu10I	CCTNAGC	1 cut(s)	1473
Bpu14I	TTCGAA	2 cut(s)	416, 1602
BpuEI	CTTGAG	2 cut(s)	614, 734
Bsa29I	ATCGAT	1 cut(s)	1107
BsaBI	GATNNNNATC	1 cut(s)	1650
BsaI	GGTCTC	2 cut(s)	752, 1250
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	2 cut(s)	68, 1259
BsaXI	ACNNNNNCTCC	2 cut(s)	1583, 1613
Bsc4I	CCNNNNNNNGG	2 cut(s)	871, 1444
Bse1I	ACTGG	1 cut(s)	699
Bse3DI	GCAATG	4 cut(s)	369, 1113, 1426, 1438
Bse8I	GATNNNNATC	1 cut(s)	1650
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	5 cut(s)	172, 526, 605, 621, 1589
BseCI	ATCGAT	1 cut(s)	1107
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	5 cut(s)	77, 684, 892, 1148, 1753
BseJI	GATNNNNATC	1 cut(s)	1650
BseLI	CCNNNNNNNGG	2 cut(s)	871, 1444
BseMI	GCAATG	4 cut(s)	369, 1113, 1426, 1438
BseMII	CTCAG	7 cut(s)	96, 201, 470, 537, 1453, 1576, 1602
BseNI	ACTGG	1 cut(s)	699
BseXI	GCAGC	8 cut(s)	343, 703, 1191, 1219, 1465, 1467, 1481, 1547
BseYI	CCCAGC	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	5 cut(s)	138, 333, 942, 1395, 1437
BshVI	ATCGAT	1 cut(s)	1107
BsiHKAI	GWGCWC	2 cut(s)	495, 758
BsiSI	CCGG	2 cut(s)	69, 1260
BslI	CCNNNNNNNGG	2 cut(s)	871, 1444
BsmAI	GTCTC	6 cut(s)	255, 567, 752, 1250, 1552, 1630
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	5 cut(s)	138, 333, 942, 1395, 1437
Bso31I	GGTCTC	2 cut(s)	752, 1250
Bsp119I	TTCGAA	2 cut(s)	416, 1602
Bsp1286I	GDGCHC	2 cut(s)	495, 758
Bsp13I	TCCGGA	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	8 cut(s)	91, 233, 517, 957, 1022, 1141, 1309, 1816
Bsp68I	TCGCGA	1 cut(s)	198
BspACI	CCGC	6 cut(s)	75, 131, 134, 316, 811, 1079
BspANI	GGCC	5 cut(s)	138, 333, 942, 1395, 1437
BspCNI	CTCAG	7 cut(s)	97, 200, 471, 538, 1452, 1575, 1603
BspDI	ATCGAT	1 cut(s)	1107
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	6 cut(s)	40, 111, 332, 1215, 1396, 1617
BspPI	GGATC	4 cut(s)	99, 512, 952, 1030
BspQI	GCTCTTC	1 cut(s)	1683
BspT104I	TTCGAA	2 cut(s)	416, 1602
BspTNI	GGTCTC	2 cut(s)	752, 1250
BsrBI	CCGCTC	1 cut(s)	316
BsrDI	GCAATG	4 cut(s)	369, 1113, 1426, 1438
BsrGI	TGTACA	1 cut(s)	781
BsrI	ACTGG	1 cut(s)	699
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	8 cut(s)	91, 233, 517, 957, 1022, 1141, 1309, 1816
BssSI	CACGAG	1 cut(s)	866
Bst2BI	CACGAG	1 cut(s)	866
Bst2UI	CCWGG	5 cut(s)	172, 526, 605, 621, 1589
Bst4CI	ACNGT	4 cut(s)	746, 1139, 1685, 1787
Bst6I	CTCTTC	3 cut(s)	852, 1335, 1683
BstAPI	GCANNNNNTGC	1 cut(s)	1541
BstAUI	TGTACA	1 cut(s)	781
BstBI	TTCGAA	2 cut(s)	416, 1602
BstC8I	GCNNGC	3 cut(s)	136, 1047, 1453
BstDEI	CTNAG	9 cut(s)	105, 187, 479, 546, 807, 1439, 1473, 1562, 1611
BstENI	CCTNNNNNAGG	1 cut(s)	869
BstF5I	GGATG	5 cut(s)	77, 684, 892, 1148, 1753
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	1522
BstKTI	GATC	8 cut(s)	94, 236, 520, 960, 1025, 1144, 1312, 1819
BstMAI	GTCTC	6 cut(s)	255, 567, 752, 1250, 1552, 1630
BstMBI	GATC	8 cut(s)	91, 233, 517, 957, 1022, 1141, 1309, 1816
BstMWI	GCNNNNNNNGC	5 cut(s)	490, 1213, 1475, 1478, 1541
BstNI	CCWGG	5 cut(s)	172, 526, 605, 621, 1589
BstNSI	RCATGY	3 cut(s)	363, 378, 788
BstSCI	CCNGG	5 cut(s)	170, 524, 603, 619, 1587
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	8 cut(s)	343, 703, 1191, 1219, 1465, 1467, 1481, 1547
BstX2I	RGATCY	3 cut(s)	233, 957, 1022
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	3 cut(s)	233, 957, 1022
Bsu15I	ATCGAT	1 cut(s)	1107
BsuI	GTATCC	2 cut(s)	198, 609
BsuRI	GGCC	5 cut(s)	138, 333, 942, 1395, 1437
BsuTUI	ATCGAT	1 cut(s)	1107
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	5 cut(s)	77, 684, 892, 1148, 1753
BtsIMutI	CAGTG	3 cut(s)	706, 1144, 1690
BtuMI	TCGCGA	1 cut(s)	198
Cac8I	GCNNGC	3 cut(s)	136, 1047, 1453
CaiI	CAGNNNCTG	1 cut(s)	839
CfoI	GCGC	1 cut(s)	1522
Cfr13I	GGNCC	3 cut(s)	136, 331, 1394
ClaI	ATCGAT	1 cut(s)	1107
Csp6I	GTAC	5 cut(s)	12, 164, 350, 782, 1810
CviAII	CATG	7 cut(s)	360, 375, 664, 785, 1391, 1679, 1736
CviQI	GTAC	5 cut(s)	12, 164, 350, 782, 1810
DdeI	CTNAG	9 cut(s)	105, 187, 479, 546, 807, 1439, 1473, 1562, 1611
DpnI	GATC	8 cut(s)	93, 235, 519, 959, 1024, 1143, 1311, 1818
DpnII	GATC	8 cut(s)	91, 233, 517, 957, 1022, 1141, 1309, 1816
Eam1104I	CTCTTC	3 cut(s)	852, 1335, 1683
EarI	CTCTTC	3 cut(s)	852, 1335, 1683
Eco31I	GGTCTC	2 cut(s)	752, 1250
Eco32I	GATATC	1 cut(s)	1489
Eco57I	CTGAAG	2 cut(s)	1287, 1551
EcoNI	CCTNNNNNAGG	1 cut(s)	869
EcoRII	CCWGG	5 cut(s)	170, 524, 603, 619, 1587
EcoRV	GATATC	1 cut(s)	1489
EcoT22I	ATGCAT	1 cut(s)	1708
FaeI	CATG	7 cut(s)	363, 378, 667, 788, 1394, 1682, 1739
FatI	CATG	7 cut(s)	359, 374, 663, 784, 1390, 1678, 1735
FauI	CCCGC	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	1141
FblI	GTMKAC	2 cut(s)	55, 1803
FokI	GGATG	5 cut(s)	84, 691, 899, 1135, 1760
FspI	TGCGCA	1 cut(s)	1521
GlaI	GCGC	1 cut(s)	1521
GsaI	CCCAGC	1 cut(s)	449
GsuI	CTGGAG	3 cut(s)	154, 1334, 1610
HaeIII	GGCC	5 cut(s)	138, 333, 942, 1395, 1437
HapII	CCGG	2 cut(s)	69, 1260
HhaI	GCGC	1 cut(s)	1522
Hin1II	CATG	7 cut(s)	363, 378, 667, 788, 1394, 1682, 1739
Hin6I	GCGC	1 cut(s)	1520
HinP1I	GCGC	1 cut(s)	1520
HincII	GTYRAC	1 cut(s)	1321
HindII	GTYRAC	1 cut(s)	1321
HindIII	AAGCTT	1 cut(s)	1269
HinfI	GANTC	5 cut(s)	836, 1283, 1381, 1560, 1646
HpaII	CCGG	2 cut(s)	69, 1260
Hpy166II	GTNNAC	9 cut(s)	12, 56, 601, 704, 950, 968, 1010, 1321, 1804
Hpy188I	TCNGA	8 cut(s)	106, 343, 480, 766, 1288, 1300, 1612, 1838
Hpy8I	GTNNAC	9 cut(s)	12, 56, 601, 704, 950, 968, 1010, 1321, 1804
HpyAV	CCTTC	9 cut(s)	29, 531, 605, 621, 865, 1340, 1496, 1748, 1757
HpyCH4III	ACNGT	4 cut(s)	746, 1139, 1685, 1787
HpyF10VI	GCNNNNNNNGC	5 cut(s)	490, 1213, 1475, 1478, 1541
HpyF3I	CTNAG	9 cut(s)	105, 187, 479, 546, 807, 1439, 1473, 1562, 1611
Hsp92II	CATG	7 cut(s)	363, 378, 667, 788, 1394, 1682, 1739
HspAI	GCGC	1 cut(s)	1520
Kpn2I	TCCGGA	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	1141
Kzo9I	GATC	8 cut(s)	91, 233, 517, 957, 1022, 1141, 1309, 1816
LguI	GCTCTTC	1 cut(s)	1683
LmnI	GCTCC	8 cut(s)	173, 449, 761, 843, 1081, 1213, 1448, 1621
Lsp1109I	GCAGC	8 cut(s)	343, 703, 1191, 1219, 1465, 1467, 1481, 1547
LweI	GCATC	8 cut(s)	37, 62, 669, 784, 1082, 1113, 1662, 1693
MalI	GATC	8 cut(s)	93, 235, 519, 959, 1024, 1143, 1311, 1818
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	8 cut(s)	91, 233, 517, 957, 1022, 1141, 1309, 1816
MfeI	CAATTG	3 cut(s)	146, 498, 1492
MflI	RGATCY	3 cut(s)	233, 957, 1022
MhlI	GDGCHC	2 cut(s)	495, 758
MlyI	GAGTC	2 cut(s)	1292, 1554
Mph1103I	ATGCAT	1 cut(s)	1708
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	1598
MseI	TTAA	3 cut(s)	123, 1086, 1335
MslI	CAYNNNNRTG	6 cut(s)	662, 789, 1389, 1431, 1683, 1740
MspA1I	CMGCKG	2 cut(s)	1250, 1538
MspI	CCGG	2 cut(s)	69, 1260
MspR9I	CCNGG	5 cut(s)	172, 526, 605, 621, 1589
MunI	CAATTG	3 cut(s)	146, 498, 1492
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	5 cut(s)	172, 526, 605, 621, 1589
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	5 cut(s)	490, 1213, 1475, 1478, 1541
NdeII	GATC	8 cut(s)	91, 233, 517, 957, 1022, 1141, 1309, 1816
NlaIII	CATG	7 cut(s)	363, 378, 667, 788, 1394, 1682, 1739
NlaIV	GGNNCC	6 cut(s)	40, 111, 332, 1215, 1396, 1617
NruI	TCGCGA	1 cut(s)	198
NsbI	TGCGCA	1 cut(s)	1521
NsiI	ATGCAT	1 cut(s)	1708
NspI	RCATGY	3 cut(s)	363, 378, 788
NspV	TTCGAA	2 cut(s)	416, 1602
PciI	ACATGT	1 cut(s)	784
PciSI	GCTCTTC	1 cut(s)	1683
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	1598
PfeI	GAWTC	3 cut(s)	836, 1381, 1646
PfoI	TCCNGGA	1 cut(s)	1587
PleI	GAGTC	2 cut(s)	1291, 1554
PpsI	GAGTC	2 cut(s)	1291, 1554
PscI	ACATGT	1 cut(s)	784
Psp6I	CCWGG	5 cut(s)	170, 524, 603, 619, 1587
PspFI	CCCAGC	1 cut(s)	445
PspGI	CCWGG	5 cut(s)	170, 524, 603, 619, 1587
PspN4I	GGNNCC	6 cut(s)	40, 111, 332, 1215, 1396, 1617
PspPI	GGNCC	3 cut(s)	136, 331, 1394
PstNI	CAGNNNCTG	1 cut(s)	839
PsuI	RGATCY	3 cut(s)	233, 957, 1022
PvuII	CAGCTG	2 cut(s)	1250, 1538
RruI	TCGCGA	1 cut(s)	198
RsaI	GTAC	5 cut(s)	13, 165, 351, 783, 1811
RsaNI	GTAC	5 cut(s)	12, 164, 350, 782, 1810
RseI	CAYNNNNRTG	6 cut(s)	662, 789, 1389, 1431, 1683, 1740
SapI	GCTCTTC	1 cut(s)	1683
SaqAI	TTAA	3 cut(s)	123, 1086, 1335
Sau3AI	GATC	8 cut(s)	91, 233, 517, 957, 1022, 1141, 1309, 1816
Sau96I	GGNCC	3 cut(s)	136, 331, 1394
SchI	GAGTC	2 cut(s)	1292, 1554
ScrFI	CCNGG	5 cut(s)	172, 526, 605, 621, 1589
SduI	GDGCHC	2 cut(s)	495, 758
SfaNI	GCATC	8 cut(s)	37, 62, 669, 784, 1082, 1113, 1662, 1693
SfuI	TTCGAA	2 cut(s)	416, 1602
SmiMI	CAYNNNNRTG	6 cut(s)	662, 789, 1389, 1431, 1683, 1740
SmlI	CTYRAG	2 cut(s)	593, 749
SmoI	CTYRAG	2 cut(s)	593, 749
SsiI	CCGC	6 cut(s)	75, 131, 134, 316, 811, 1079
StyD4I	CCNGG	5 cut(s)	170, 524, 603, 619, 1587
TaaI	ACNGT	4 cut(s)	746, 1139, 1685, 1787
TaqI	TCGA	4 cut(s)	210, 416, 1107, 1602
TatI	WGTACW	4 cut(s)	11, 349, 781, 1809
TauI	GCSGC	3 cut(s)	78, 134, 814
TfiI	GAWTC	3 cut(s)	836, 1381, 1646
Tru1I	TTAA	3 cut(s)	123, 1086, 1335
Tru9I	TTAA	3 cut(s)	123, 1086, 1335
TscAI	CASTG	3 cut(s)	706, 1144, 1690
TseI	GCWGC	8 cut(s)	356, 716, 1204, 1232, 1455, 1469, 1478, 1535
TspGWI	ACGGA	1 cut(s)	1032
TspRI	CASTG	3 cut(s)	706, 1144, 1690
XagI	CCTNNNNNAGG	1 cut(s)	869
XapI	RAATTY	4 cut(s)	319, 821, 1640, 1697
XceI	RCATGY	3 cut(s)	363, 378, 788
XmiI	GTMKAC	2 cut(s)	55, 1803
XmnI	GAANNNNTTC	1 cut(s)	1598
Zsp2I	ATGCAT	1 cut(s)	1708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.