Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Forward (+)

31803461 .. 31804693

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGAAGCAATCTAAAGCAAAGAAATCGAGAATTTGGGAAAGGATCGCCTTCCTCGTCAACCGTTTCTCTTTGATAACACCGCACCGAAGCCTCGCTTCGTTTTCCGGACTAAAGCCTCCTCACTCTTCTCTACGTCTCGATTCAAGAGCCGAATATGAATTGAGATGTATGAGAAATGCTTTAGATATGGGAGACAATGAAGAAATTATTGACATAGCTAAACGCTTTTATAGAGTATGTGTACTGTTACTTGAATTTAAGATTCAATACGGTTCTTTATACGAACTTGTGAACTGTTCGGTTCGAATCTGCTTTGCTTTTGTGAAGATTGTGATTGAGCGGAATTTCACAAGGGACCGTAAGTCGAGCAAGTATAGGCTGCATGCATGTCTTTACATTGCATGTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

137

Amino Acids

16.14

Weight (kDa)

9.85

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	343
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	2 cut(s)	83, 343
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	3 cut(s)	33, 257, 346
AfaI	GTAC	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	147, 257, 269
AhdI	GACNNNNNGTC	1 cut(s)	364
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	2 cut(s)	143, 189
AlwI	GGATC	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	382
ApoI	RAATTY	3 cut(s)	33, 257, 346
AspS9I	GGNCC	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	369
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BcoDI	GTCTC	2 cut(s)	143, 189
BisI	GCNGC	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	358
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	307
BsaWI	WCCGGW	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	371
BsmAI	GTCTC	2 cut(s)	143, 189
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	307
Bsp13I	TCCGGA	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	2 cut(s)	83, 343
BspEI	TCCGGA	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	307
BsrBI	CCGCTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	399
BssMI	GATC	1 cut(s)	45
Bst4CI	ACNGT	5 cut(s)	65, 249, 275, 299, 362
Bst6I	CTCTTC	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	387
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	2 cut(s)	143, 189
BstMBI	GATC	1 cut(s)	45
BstNSI	RCATGY	3 cut(s)	389, 393, 408
BstV1I	GCAGC	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	3 cut(s)	386, 390, 405
CviJI	RGCY	5 cut(s)	93, 118, 152, 221, 382
CviKI_1	RGCY	5 cut(s)	93, 118, 152, 221, 382
CviQI	GTAC	1 cut(s)	245
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DriI	GACNNNNNGTC	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	133
Eam1105I	GACNNNNNGTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	358
EcoT22I	ATGCAT	1 cut(s)	391
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	3 cut(s)	389, 393, 408
FalI	AAGNNNNNCTT	2 cut(s)	82, 114
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	3 cut(s)	385, 389, 404
Fnu4HI	GCNGC	1 cut(s)	383
Fsp4HI	GCNGC	1 cut(s)	383
GluI	GCNGC	1 cut(s)	383
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	3 cut(s)	389, 393, 408
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	143, 265, 309
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	3 cut(s)	61, 245, 295
Hpy188III	TCNNGA	4 cut(s)	30, 108, 140, 147
Hpy8I	GTNNAC	3 cut(s)	61, 245, 295
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	5 cut(s)	65, 249, 275, 299, 362
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	385, 389, 404
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	3 cut(s)	389, 393, 408
Kpn2I	TCCGGA	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	1 cut(s)	121
Lsp1109I	GCAGC	1 cut(s)	369
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	1 cut(s)	47
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	1 cut(s)	45
MboII	GAAGA	3 cut(s)	120, 215, 340
MluCI	AATT	5 cut(s)	33, 161, 207, 257, 346
MnlI	CCTC	4 cut(s)	65, 104, 129, 132
Mph1103I	ATGCAT	1 cut(s)	391
MroI	TCCGGA	1 cut(s)	107
MseI	TTAA	1 cut(s)	261
MspI	CCGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	3 cut(s)	389, 393, 408
NlaIV	GGNNCC	1 cut(s)	359
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	3 cut(s)	389, 393, 408
NspV	TTCGAA	1 cut(s)	307
PaeI	GCATGC	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	143, 265, 309
PkrI	GCNGC	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	358
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	383
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	358
SetI	ASST	2 cut(s)	139, 223
SfuI	TTCGAA	1 cut(s)	307
SinI	GGWCC	1 cut(s)	358
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	5 cut(s)	33, 161, 207, 257, 346
SsiI	CCGC	2 cut(s)	83, 343
TaaI	ACNGT	5 cut(s)	65, 249, 275, 299, 362
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	4 cut(s)	29, 141, 307, 368
TasI	AATT	5 cut(s)	33, 161, 207, 257, 346
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	3 cut(s)	143, 265, 309
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseI	GCWGC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	174, 216
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	3 cut(s)	33, 257, 346
XceI	RCATGY	3 cut(s)	389, 393, 408
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.