Rorug07G0245800

Transcription factor IIIB

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
22783063 .. 22783233
171 bp
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UTR
Exon/CDS
Intron
Rorug07G0245800.1

Sequence Viewer

Length: 171 bp
ATGGTATCAGAGCAGACTACCCACGTGTGCATGCCTAACGGCCACACGGGCTCCACGTCACCCAAAAGTTGTCCACGTGTATGGCTTGAAAATTCGCCACACGTGCGGGGGCGTGTTGAGAATATATACATCCCACATGGGAAAAACGAGACATTGCCTATGGGTTTATAA

Protein Analysis

56

Amino Acids

6.21

Weight (kDa)

7.89

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 169
AciI CCGC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 91
AcvI CACGTG 3 cut(s) 25, 77, 103
AflIII ACRYGT 3 cut(s) 24, 76, 100
AgsI TTSAA 1 cut(s) 89
AjiI CACGTC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 143
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 51
BanII GRGCYC 1 cut(s) 53
BbrPI CACGTG 3 cut(s) 25, 77, 103
BceAI ACGGC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 143
BglI GCCNNNNNGGC 1 cut(s) 48
BmgBI CACGTC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 52
BsaAI YACGTR 3 cut(s) 25, 77, 103
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse3DI GCAATG 1 cut(s) 152
BseGI GGATG 1 cut(s) 129
BseMI GCAATG 1 cut(s) 152
BshFI GGCC 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 143
BsnI GGCC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 53
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 152
BstBAI YACGTR 3 cut(s) 25, 77, 103
BstC8I GCNNGC 1 cut(s) 32
BstF5I GGATG 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 143
BstMWI GCNNNNNNNGC 2 cut(s) 48, 103
BstNSI RCATGY 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 81
BsuRI GGCC 1 cut(s) 42
BtrI CACGTC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 32
CviAII CATG 2 cut(s) 31, 137
CviJI RGCY 3 cut(s) 42, 51, 85
CviKI_1 RGCY 3 cut(s) 42, 51, 85
EaeI YGGCCR 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 53
Eco72I CACGTG 3 cut(s) 25, 77, 103
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 2 cut(s) 34, 140
FaiI YATR 7 cut(s) 32, 82, 125, 127, 138, 161, 169
FatI CATG 2 cut(s) 30, 136
FauI CCCGC 1 cut(s) 99
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 42
Hin1II CATG 2 cut(s) 34, 140
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 74
HpyCH4IV ACGT 4 cut(s) 24, 56, 76, 102
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 103
HpySE526I ACGT 4 cut(s) 24, 56, 76, 102
Hsp92II CATG 2 cut(s) 34, 140
LmnI GCTCC 1 cut(s) 56
MaeII ACGT 4 cut(s) 24, 56, 76, 102
MaeIII GTNAC 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 1 cut(s) 91
MslI CAYNNNNRTG 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 48, 103
NlaIII CATG 2 cut(s) 34, 140
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 57
NspI RCATGY 1 cut(s) 34
PaeI GCATGC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PmaCI CACGTG 3 cut(s) 25, 77, 103
PmlI CACGTG 3 cut(s) 25, 77, 103
Ppu21I YACGTR 3 cut(s) 25, 77, 103
PsiI TTATAA 1 cut(s) 169
PspCI CACGTG 3 cut(s) 25, 77, 103
PspN4I GGNNCC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 79
SduI GDGCHC 1 cut(s) 53
SetI ASST 4 cut(s) 27, 59, 79, 105
SmiMI CAYNNNNRTG 1 cut(s) 79
SphI GCATGC 1 cut(s) 34
Sse9I AATT 1 cut(s) 91
SsiI CCGC 1 cut(s) 106
TaiI ACGT 4 cut(s) 27, 59, 79, 105
TasI AATT 1 cut(s) 91
TseFI GTSAC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 57
XapI RAATTY 1 cut(s) 91
XceI RCATGY 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.