Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001348.1

Orthogroup ID

OG0000772

Physical Location & Seq

Genomic Coordinates Reverse (-)

131311 .. 136442

Gene Structure 5132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001348.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atggtatggtgtactttctgtgtcaaaaatgttgaaggaaccagcgatgctggtagactatggtgttccggatgcggcaaggttttagaggatcacattttctctgaggaacccactttcgttaagaatgcggcgggccagagccaattggctggaagatatgtacgctccagggaaagcgaaatctcagcttctcgcgaaaggatactcgaaaatgccgaatatgaattgagatgtatgagaaatgctttagatatgggagacaatgaagaaattattgacatagctaaacgcttttatagaattgcgattgagcggaatttcacaagggggcgcaagtcagagcaagtacaggctgcatgtctttacattgcatgtcgggaaaagaagaagccgtatcttctcattgatttttcgaactacttgaagataaatgtctatgtgctaggagctgtgtttttgcaactttgcaaggctctgaggcttgatgagcacccaattgttcaaaaacttgttgatccttcctggtttattcatagatttgctgagagtttaccaggaggaagggataaaggggttatgcaaactgcacaaaggattatcacaagcatgaaacgggattggatgcagacaggcagaaaacctagtggactatgtggtgctgcattatatatatcagcactttcacatggtctcaagtgctccaagtctgatattatcaaaattgtacatgtttgtgatgctacattgactaagcggctggttgaatttgagaatacagaatctgggagcttgacgggtatgaaggttttctacattgttgcaaaatggtggtggggaggattgtgggttggagaggaagcgttcataggtcttttgaccagattattgaacttgtcgaatttccacggtgacacagtagctgatgtggcagagggtttgagtttcagattgagtctgtacatgtggtttagaaggaatttatatgacctagagagggaggagctgattttaccgttatggaaatgggaaggtgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000126 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRF1 TFIIB

Protein Analysis

346

Amino Acids

39.66

Weight (kDa)

8.56

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30455 AT2G01280 AT2G01280 AT2G01280 AT2G45100 AT2G45100 AT2G45100 AT3G09360 AT3G09360 AT3G09360
fragaria_vesca	FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_4g11810 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_5g32090 FvH4_7g06241
malus_domestica	MD04G1033900.v1.1
prunus_persica	Prupe.1G180700_v2.0.a1
pyrus_communis	pycom04g02830
rosa_chinensis	RchiOBHm_Chr4g0409121 RchiOBHm_Chr7g0228131
rosa_laevigata	RLG00000001586 RLG00000008590
rosa_multiflora	Rmu_sc0001348.1_g000036 Rmu_sc0001348.1_g000042 Rmu_sc0001526.1_g000006 Rmu_sc0001526.1_g000008 Rmu_sc0012031.1_g000013 Rmu_sc0021826.1_g000001 Rmu_ssc0000372.1_g000072
rosa_roxburghii	Rroxscaffold_2G00115130 Rroxscaffold_3G00231370 Rroxscaffold_5G00353680 Rroxscaffold_7G00191300
rosa_rugosa	Rorug04G0090500 Rorug04G0090600 Rorug04G0090700 Rorug07G0245700 Rorug07G0245800
rosa_samantha	Rh2AG319000 Rh4AG154400 Rh4BG152200 Rh4CG163600 Rh4CG264400 Rh4DG147400 Rh5DG375300 Rh7AG400000 Rh7BG381300 Rh7CG418200 Rh7DG396100
rosa_wichuraiana	Rw0G005090 Rw0G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	55
AccII	CGCG	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	5 cut(s)	75, 131, 134, 316, 757
AclWI	GGATC	2 cut(s)	99, 512
AcsI	RAATTY	4 cut(s)	319, 767, 901, 979
AfaI	GTAC	5 cut(s)	13, 165, 351, 729, 962
AfiI	CCNNNNNNNGG	1 cut(s)	997
AflIII	ACRYGT	2 cut(s)	730, 963
AgsI	TTSAA	5 cut(s)	35, 427, 506, 767, 892
AjnI	CCWGG	3 cut(s)	170, 524, 556
AluBI	AGCT	6 cut(s)	191, 287, 452, 792, 923, 1006
AluI	AGCT	6 cut(s)	191, 287, 452, 792, 923, 1006
Alw21I	GWGCWC	2 cut(s)	495, 704
Alw26I	GTCTC	2 cut(s)	255, 698
AlwI	GGATC	2 cut(s)	99, 512
AlwNI	CAGNNNCTG	2 cut(s)	785, 923
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	356, 662
ApoI	RAATTY	4 cut(s)	319, 767, 901, 979
Asp700I	GAANNNNTTC	1 cut(s)	809
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	923
AsuII	TTCGAA	1 cut(s)	416
BarI	GAAGNNNNNNTAC	2 cut(s)	797, 829
Bbv12I	GWGCWC	2 cut(s)	495, 704
BbvI	GCAGC	2 cut(s)	343, 649
BceAI	ACGGC	1 cut(s)	379
BciT130I	CCWGG	3 cut(s)	172, 526, 558
BciVI	GTATCC	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	255, 698
BfaI	CTAG	3 cut(s)	446, 645, 992
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	5 cut(s)	76, 132, 357, 663, 758
BlsI	GCNGC	5 cut(s)	77, 133, 358, 664, 759
Bme1390I	CCNGG	3 cut(s)	172, 526, 558
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	40, 111
BmrFI	CCNGG	3 cut(s)	172, 526, 558
BmsI	GCATC	4 cut(s)	37, 62, 615, 730
BpmI	CTGGAG	1 cut(s)	154
Bpu14I	TTCGAA	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	680
BsaI	GGTCTC	1 cut(s)	698
BsaJI	CCNNGG	2 cut(s)	171, 907
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	997
Bse3DI	GCAATG	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	3 cut(s)	172, 526, 558
BseDI	CCNNGG	2 cut(s)	171, 907
BseGI	GGATG	2 cut(s)	77, 630
BseLI	CCNNNNNNNGG	1 cut(s)	997
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	4 cut(s)	96, 201, 470, 537
BseRI	GAGGAG	1 cut(s)	1016
BseXI	GCAGC	2 cut(s)	343, 649
BsgI	GTGCAG	1 cut(s)	573
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	495, 704
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	997
BsmAI	GTCTC	2 cut(s)	255, 698
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	138
Bso31I	GGTCTC	1 cut(s)	698
Bsp119I	TTCGAA	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	495, 704
Bsp13I	TCCGGA	1 cut(s)	68
Bsp1407I	TGTACA	2 cut(s)	727, 960
Bsp143I	GATC	2 cut(s)	91, 517
Bsp68I	TCGCGA	1 cut(s)	198
BspACI	CCGC	5 cut(s)	75, 131, 134, 316, 757
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	4 cut(s)	97, 200, 471, 538
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	40, 111
BspPI	GGATC	2 cut(s)	99, 512
BspT104I	TTCGAA	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	698
BsrBI	CCGCTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	369
BsrGI	TGTACA	2 cut(s)	727, 960
BssECI	CCNNGG	2 cut(s)	171, 907
BssMI	GATC	2 cut(s)	91, 517
Bst2UI	CCWGG	3 cut(s)	172, 526, 558
Bst4CI	ACNGT	3 cut(s)	911, 919, 1017
BstAUI	TGTACA	2 cut(s)	727, 960
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	5 cut(s)	105, 187, 479, 546, 753
BstDSI	CCRYGG	1 cut(s)	907
BstF5I	GGATG	2 cut(s)	77, 630
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	2 cut(s)	94, 520
BstMAI	GTCTC	2 cut(s)	255, 698
BstMBI	GATC	2 cut(s)	91, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 929
BstNI	CCWGG	3 cut(s)	172, 526, 558
BstNSI	RCATGY	4 cut(s)	363, 378, 734, 967
BstSCI	CCNGG	3 cut(s)	170, 524, 556
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	343, 649
BstXI	CCANNNNNNTGG	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	907
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	77, 630
BtuMI	TCGCGA	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	136
CaiI	CAGNNNCTG	2 cut(s)	785, 923
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	5 cut(s)	12, 164, 350, 728, 961
CviAII	CATG	6 cut(s)	360, 375, 610, 689, 731, 964
CviQI	GTAC	5 cut(s)	12, 164, 350, 728, 961
DdeI	CTNAG	5 cut(s)	105, 187, 479, 546, 753
DpnI	GATC	2 cut(s)	93, 519
DpnII	GATC	2 cut(s)	91, 517
Eco31I	GGTCTC	1 cut(s)	698
EcoRII	CCWGG	3 cut(s)	170, 524, 556
FaeI	CATG	6 cut(s)	363, 378, 613, 692, 734, 967
FatI	CATG	6 cut(s)	359, 374, 609, 688, 730, 963
FauI	CCCGC	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	5 cut(s)	76, 132, 357, 663, 758
FokI	GGATG	2 cut(s)	84, 637
Fsp4HI	GCNGC	5 cut(s)	76, 132, 357, 663, 758
FspBI	CTAG	3 cut(s)	446, 645, 992
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	5 cut(s)	76, 132, 357, 663, 758
GsuI	CTGGAG	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	6 cut(s)	363, 378, 613, 692, 734, 967
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	782, 955
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	4 cut(s)	12, 56, 554, 650
Hpy188I	TCNGA	5 cut(s)	106, 343, 480, 712, 950
Hpy188III	TCNNGA	3 cut(s)	69, 197, 380
Hpy8I	GTNNAC	4 cut(s)	12, 56, 554, 650
HpyAV	CCTTC	6 cut(s)	29, 531, 558, 799, 969, 1025
HpyCH4III	ACNGT	3 cut(s)	911, 919, 1017
HpyCH4V	TGCA	9 cut(s)	359, 374, 463, 471, 583, 590, 628, 665, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 929
HpyF3I	CTNAG	5 cut(s)	105, 187, 479, 546, 753
Hsp92II	CATG	6 cut(s)	363, 378, 613, 692, 734, 967
HspAI	GCGC	1 cut(s)	334
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	91, 517
LmnI	GCTCC	5 cut(s)	173, 449, 707, 789, 1003
Lsp1109I	GCAGC	2 cut(s)	343, 649
LweI	GCATC	4 cut(s)	37, 62, 615, 730
MaeI	CTAG	3 cut(s)	446, 645, 992
MaeIII	GTNAC	1 cut(s)	911
MalI	GATC	2 cut(s)	93, 519
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	2 cut(s)	91, 517
MboII	GAAGA	5 cut(s)	168, 281, 392, 400, 439
MfeI	CAATTG	2 cut(s)	146, 498
MhlI	GDGCHC	2 cut(s)	495, 704
MlyI	GAGTC	1 cut(s)	964
MmeI	TCCRAC	1 cut(s)	832
MnlI	CCTC	9 cut(s)	82, 100, 474, 554, 833, 850, 928, 990, 994
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	809
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	2 cut(s)	608, 735
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	3 cut(s)	172, 526, 558
MunI	CAATTG	2 cut(s)	146, 498
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	3 cut(s)	172, 526, 558
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	490, 929
NdeII	GATC	2 cut(s)	91, 517
NlaIII	CATG	6 cut(s)	363, 378, 613, 692, 734, 967
NlaIV	GGNNCC	2 cut(s)	40, 111
NmuCI	GTSAC	1 cut(s)	911
NruI	TCGCGA	1 cut(s)	198
NspI	RCATGY	4 cut(s)	363, 378, 734, 967
NspV	TTCGAA	1 cut(s)	416
PciI	ACATGT	2 cut(s)	730, 963
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	1 cut(s)	782
PkrI	GCNGC	5 cut(s)	77, 133, 358, 664, 759
PleI	GAGTC	1 cut(s)	963
PpsI	GAGTC	1 cut(s)	963
PscI	ACATGT	2 cut(s)	730, 963
Psp6I	CCWGG	3 cut(s)	170, 524, 556
PspGI	CCWGG	3 cut(s)	170, 524, 556
PspN4I	GGNNCC	2 cut(s)	40, 111
PspPI	GGNCC	1 cut(s)	136
PstNI	CAGNNNCTG	2 cut(s)	785, 923
RruI	TCGCGA	1 cut(s)	198
RsaI	GTAC	5 cut(s)	13, 165, 351, 729, 962
RsaNI	GTAC	5 cut(s)	12, 164, 350, 728, 961
RseI	CAYNNNNRTG	2 cut(s)	608, 735
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	5 cut(s)	76, 132, 357, 663, 758
Sau3AI	GATC	2 cut(s)	91, 517
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	964
ScrFI	CCNGG	3 cut(s)	172, 526, 558
SduI	GDGCHC	2 cut(s)	495, 704
SfaNI	GCATC	4 cut(s)	37, 62, 615, 730
SfuI	TTCGAA	1 cut(s)	416
SmiMI	CAYNNNNRTG	2 cut(s)	608, 735
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SsiI	CCGC	5 cut(s)	75, 131, 134, 316, 757
SspMI	CTAG	3 cut(s)	446, 645, 992
StyD4I	CCNGG	3 cut(s)	170, 524, 556
TaaI	ACNGT	3 cut(s)	911, 919, 1017
TaqI	TCGA	3 cut(s)	210, 416, 899
TatI	WGTACW	4 cut(s)	11, 349, 727, 960
TauI	GCSGC	3 cut(s)	78, 134, 760
TfiI	GAWTC	1 cut(s)	782
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	2 cut(s)	356, 662
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	6 cut(s)	240, 282, 524, 626, 818, 856
XapI	RAATTY	4 cut(s)	319, 767, 901, 979
XceI	RCATGY	4 cut(s)	363, 378, 734, 967
XmiI	GTMKAC	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	809
XspI	CTAG	3 cut(s)	446, 645, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.