Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Reverse (-)

314693 .. 317431

Gene Structure 2739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCCTGGAATTAGAGGTCCTTCGGAATACTCGCAGGAACCACCTCGTCACCCTTCTCTCAAGGTCAACGCCAAGGAACCTTTCAACGCCGAGCCTCCCCGCTCGGCCTTAGTCTCATCTTATGTCACTCCCGTCGACCTTTTCTACAAGCGAAATCATGGTCCCATCCCCATTGTTGATCACCTTCAAAGCTACTCCGTCACCCTTACTGGATTGATCCAGAACCCGAGAAAGCTCTTTATCAAAGACATCAGGTCCCTCCCAAAGTACAATGTTACTGCTACTCTTCAGTGTGCCGGTAACAGAAGGACTGCCATGAGCAAAGTTAGGAATGTTAGAGGTGTTGGATGGGATGTTTCTGCTATTGGCAACGCTGTCTGGGGTGGGGCGAAACTGGCCGATGTTCTTGAGCTTGTGGGGATACCAAAGCTGACTGCTTCTACCAATTTAGGAGCCAGACATGTTGAGTTCGTTAGTGTTGATCGCTGTAAGGAGGAAAATGGGGGCCCTTATAAGGCGTCAATCACTCTAAGTCAAGCCACAAATCCTGAAGCGGATGTTCTACTCGCTTATGAGATGAATGGAGAGACCCTGAACAGGGATCACGGATTTCCGTTAAGGGTGGTTGTCCCTGGTGTGATTGGTGCTCGTTCGGTCAAATGGCTTGATTCCATCAATGTCATCGCTGAAGAAAGCCAGGGATTCTTCATGCAAAAAGATTACAAAATGTTTCCACCCTCTGTCAATTGGGATAATATCAACTGGTCCTCTAGGAGACCGCAAATGGATTTCCCTGTTCAGAGTGCAATCTGCTCTGTGGAGGATGTGCAAATGGTGAAGCCTGGAAAGGTAAGTATCAAAGGATATGCGGTTTCAGGAGGTGGACGCGGGATAGAAAGAGTGGACATATCCCTGGATGGAGGCAAAAACTGGGTGGAAGCTTCTAGAACGCAGGAACCAGGAAAGCAGTACATCTCAGAACACAGCTCCAGTGACAAATGGGCATGGGTGTTGTTTGAAGCCACCATTGATGTTTCACAGACTACAGAGGTCATCGCCAAAGCGGTTGATTCGGCGGCGAATGTTCAACCGGAAAATGTGGAGTCGGTGTGGAACCTAAGAGGGGTTCTCAACACTTCGTGGCACCGTGTCCTTCTCCGGCTTGGCCACTCTAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

393

Amino Acids

43.33

Weight (kDa)

8.8

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	53 - 236	1.4e-55	Oxidoreductase molybdopterin binding domain
Mo-co_dimer	PF03404	260 - 386	1.6e-42	Mo-co oxidoreductase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	1143
AccBSI	CCGCTC	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	888
AciI	CCGC	7 cut(s)	100, 554, 779, 869, 888, 1064, 1076
AclWI	GGATC	2 cut(s)	211, 609
AcoI	YGGCCR	2 cut(s)	396, 1165
AcuI	CTGAAG	3 cut(s)	272, 570, 708
AcyI	GRCGYC	1 cut(s)	518
AdeI	CACNNNGTG	1 cut(s)	1140
AfaI	GTAC	2 cut(s)	269, 971
AfiI	CCNNNNNNNGG	4 cut(s)	514, 597, 598, 1123
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	85, 188, 1019, 1088
AhdI	GACNNNNNGTC	1 cut(s)	253
AjnI	CCWGG	6 cut(s)	4, 631, 696, 841, 912, 958
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	6 cut(s)	192, 235, 412, 430, 941, 987
AluI	AGCT	6 cut(s)	192, 235, 412, 430, 941, 987
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	3 cut(s)	118, 581, 769
AlwI	GGATC	2 cut(s)	211, 609
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	4 cut(s)	105, 396, 505, 1165
ApaI	GGGCCC	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AspS9I	GGNCC	6 cut(s)	17, 161, 255, 505, 506, 765
AsuHPI	GGTGA	4 cut(s)	41, 173, 193, 847
AvaI	CYCGRG	1 cut(s)	226
AvaII	GGWCC	4 cut(s)	17, 161, 255, 765
BaeGI	GKGCMC	1 cut(s)	509
BalI	TGGCCA	1 cut(s)	1167
BanI	GGYRCC	1 cut(s)	1143
BanII	GRGCYC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	649
BccI	CCATC	4 cut(s)	173, 342, 680, 911
BciT130I	CCWGG	6 cut(s)	6, 633, 698, 843, 914, 960
BciVI	GTATCC	1 cut(s)	414
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	3 cut(s)	118, 581, 769
BfaI	CTAG	2 cut(s)	771, 945
BfmI	CTRYAG	1 cut(s)	1044
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	1 cut(s)	1077
BlsI	GCNGC	1 cut(s)	1078
Bme1390I	CCNGG	6 cut(s)	6, 633, 698, 843, 914, 960
Bme18I	GGWCC	4 cut(s)	17, 161, 255, 765
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	6 cut(s)	17, 161, 255, 505, 506, 765
BmrFI	CCNGG	6 cut(s)	6, 633, 698, 843, 914, 960
BmrI	ACTGGG	1 cut(s)	940
BmuI	ACTGGG	1 cut(s)	940
BplI	GAGNNNNNCTC	2 cut(s)	1113, 1145
BpmI	CTGGAG	1 cut(s)	973
BpuEI	CTTGAG	2 cut(s)	44, 428
BsaHI	GRCGYC	1 cut(s)	518
BsaI	GGTCTC	2 cut(s)	581, 769
BsaJI	CCNNGG	4 cut(s)	72, 631, 697, 912
BsaWI	WCCGGW	1 cut(s)	1090
BsaXI	ACNNNNNCTCC	2 cut(s)	1094, 1124
Bsc4I	CCNNNNNNNGG	4 cut(s)	514, 597, 598, 1123
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	5 cut(s)	214, 399, 767, 935, 990
BseBI	CCWGG	6 cut(s)	6, 633, 698, 843, 914, 960
BseDI	CCNNGG	4 cut(s)	72, 631, 697, 912
BseGI	GGATG	6 cut(s)	165, 353, 358, 562, 829, 922
BseLI	CCNNNNNNNGG	4 cut(s)	514, 597, 598, 1123
BseMII	CTCAG	1 cut(s)	990
BseNI	ACTGG	5 cut(s)	214, 399, 767, 935, 990
BseSI	GKGCMC	1 cut(s)	509
Bsh1236I	CGCG	1 cut(s)	888
BshFI	GGCC	4 cut(s)	107, 398, 507, 1167
BshNI	GGYRCC	1 cut(s)	1143
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	3 cut(s)	297, 1091, 1159
BslFI	GGGAC	3 cut(s)	147, 241, 614
BslI	CCNNNNNNNGG	4 cut(s)	514, 597, 598, 1123
BsmAI	GTCTC	3 cut(s)	118, 581, 769
BsmFI	GGGAC	3 cut(s)	147, 241, 614
BsnI	GGCC	4 cut(s)	107, 398, 507, 1167
Bso31I	GGTCTC	2 cut(s)	581, 769
BsoBI	CYCGRG	1 cut(s)	226
Bsp120I	GGGCCC	1 cut(s)	505
Bsp1286I	GDGCHC	2 cut(s)	509, 649
Bsp143I	GATC	4 cut(s)	178, 216, 481, 601
BspACI	CCGC	7 cut(s)	100, 554, 779, 869, 888, 1064, 1076
BspANI	GGCC	4 cut(s)	107, 398, 507, 1167
BspCNI	CTCAG	1 cut(s)	989
BspFNI	CGCG	1 cut(s)	888
BspPI	GGATC	2 cut(s)	211, 609
BspT107I	GGYRCC	1 cut(s)	1143
BspTNI	GGTCTC	2 cut(s)	581, 769
BsrBI	CCGCTC	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	5 cut(s)	214, 399, 767, 935, 990
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	4 cut(s)	72, 631, 697, 912
BssMI	GATC	4 cut(s)	178, 216, 481, 601
BssNI	GRCGYC	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	6 cut(s)	6, 633, 698, 843, 914, 960
Bst4CI	ACNGT	1 cut(s)	1148
Bst6I	CTCTTC	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	518
BstDEI	CTNAG	4 cut(s)	109, 530, 976, 1118
BstF5I	GGATG	6 cut(s)	165, 353, 358, 562, 829, 922
BstFNI	CGCG	1 cut(s)	888
BstKTI	GATC	4 cut(s)	181, 219, 484, 604
BstMAI	GTCTC	3 cut(s)	118, 581, 769
BstMBI	GATC	4 cut(s)	178, 216, 481, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	6 cut(s)	6, 633, 698, 843, 914, 960
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	6 cut(s)	4, 631, 696, 841, 912, 958
BstSFI	CTRYAG	1 cut(s)	1044
BstSLI	GKGCMC	1 cut(s)	509
BstUI	CGCG	1 cut(s)	888
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	107, 398, 507, 1167
BtgZI	GCGATG	2 cut(s)	667, 1039
BtsCI	GGATG	6 cut(s)	165, 353, 358, 562, 829, 922
BtsIMutI	CAGTG	2 cut(s)	296, 997
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	6 cut(s)	17, 161, 255, 505, 506, 765
CseI	GACGC	2 cut(s)	507, 894
Csp6I	GTAC	2 cut(s)	268, 970
CviAII	CATG	5 cut(s)	158, 316, 461, 709, 1005
CviQI	GTAC	2 cut(s)	268, 970
DdeI	CTNAG	4 cut(s)	109, 530, 976, 1118
DpnI	GATC	4 cut(s)	180, 218, 483, 603
DpnII	GATC	4 cut(s)	178, 216, 481, 601
DraIII	CACNNNGTG	1 cut(s)	1140
DriI	GACNNNNNGTC	1 cut(s)	253
EaeI	YGGCCR	2 cut(s)	396, 1165
Eam1104I	CTCTTC	1 cut(s)	291
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	509
Eco31I	GGTCTC	2 cut(s)	581, 769
Eco47I	GGWCC	4 cut(s)	17, 161, 255, 765
Eco57I	CTGAAG	3 cut(s)	272, 570, 708
Eco88I	CYCGRG	1 cut(s)	226
EcoO109I	RGGNCCY	4 cut(s)	17, 255, 505, 506
EcoRII	CCWGG	6 cut(s)	4, 631, 696, 841, 912, 958
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	5 cut(s)	161, 319, 464, 712, 1008
FaqI	GGGAC	3 cut(s)	147, 241, 614
FatI	CATG	5 cut(s)	157, 315, 460, 708, 1004
FauI	CCCGC	2 cut(s)	107, 881
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	1077
FokI	GGATG	6 cut(s)	152, 360, 365, 569, 836, 929
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	1 cut(s)	1077
FspBI	CTAG	2 cut(s)	771, 945
GluI	GCNGC	1 cut(s)	1077
GsuI	CTGGAG	1 cut(s)	973
HaeIII	GGCC	4 cut(s)	107, 398, 507, 1167
HapII	CCGG	3 cut(s)	297, 1091, 1159
HgaI	GACGC	2 cut(s)	507, 894
Hin1I	GRCGYC	1 cut(s)	518
Hin1II	CATG	5 cut(s)	161, 319, 464, 712, 1008
HincII	GTYRAC	2 cut(s)	67, 136
HindII	GTYRAC	2 cut(s)	67, 136
HindIII	AAGCTT	1 cut(s)	939
HinfI	GANTC	4 cut(s)	668, 702, 1070, 1103
HpaII	CCGG	3 cut(s)	297, 1091, 1159
HphI	GGTGA	4 cut(s)	41, 173, 193, 847
Hpy166II	GTNNAC	4 cut(s)	67, 136, 884, 904
Hpy188I	TCNGA	3 cut(s)	25, 801, 979
Hpy188III	TCNNGA	5 cut(s)	220, 407, 548, 876, 945
Hpy8I	GTNNAC	4 cut(s)	67, 136, 884, 904
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	5 cut(s)	30, 63, 194, 300, 1163
HpyCH4III	ACNGT	1 cut(s)	1148
HpyCH4V	TGCA	3 cut(s)	712, 806, 829
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	4 cut(s)	109, 530, 976, 1118
Hsp92I	GRCGYC	1 cut(s)	518
Hsp92II	CATG	5 cut(s)	161, 319, 464, 712, 1008
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	178, 216, 481, 601
LmnI	GCTCC	2 cut(s)	452, 992
MaeI	CTAG	2 cut(s)	771, 945
MaeIII	GTNAC	6 cut(s)	47, 124, 199, 274, 299, 992
MalI	GATC	4 cut(s)	180, 218, 483, 603
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	4 cut(s)	178, 216, 481, 601
MboII	GAAGA	3 cut(s)	278, 697, 701
MfeI	CAATTG	1 cut(s)	745
MhlI	GDGCHC	2 cut(s)	509, 649
MlsI	TGGCCA	1 cut(s)	1167
MluCI	AATT	3 cut(s)	9, 445, 745
MluNI	TGGCCA	1 cut(s)	1167
MlyI	GAGTC	1 cut(s)	1112
MmeI	TCCRAC	1 cut(s)	325
Mox20I	TGGCCA	1 cut(s)	1167
MscI	TGGCCA	1 cut(s)	1167
MseI	TTAA	1 cut(s)	617
Msp20I	TGGCCA	1 cut(s)	1167
MspI	CCGG	3 cut(s)	297, 1091, 1159
MspR9I	CCNGG	6 cut(s)	6, 633, 698, 843, 914, 960
MunI	CAATTG	1 cut(s)	745
MvaI	CCWGG	6 cut(s)	6, 633, 698, 843, 914, 960
MvnI	CGCG	1 cut(s)	888
MwoI	GCNNNNNNNGC	1 cut(s)	395
NdeII	GATC	4 cut(s)	178, 216, 481, 601
NlaIII	CATG	5 cut(s)	161, 319, 464, 712, 1008
NmeAIII	GCCGAG	2 cut(s)	83, 115
NmuCI	GTSAC	4 cut(s)	47, 124, 199, 992
NspI	RCATGY	1 cut(s)	464
PciI	ACATGT	1 cut(s)	460
PfeI	GAWTC	3 cut(s)	668, 702, 1070
PkrI	GCNGC	1 cut(s)	1078
PleI	GAGTC	1 cut(s)	1111
PpsI	GAGTC	1 cut(s)	1111
PpuMI	RGGWCCY	2 cut(s)	17, 255
PscI	ACATGT	1 cut(s)	460
PsiI	TTATAA	1 cut(s)	513
Psp5II	RGGWCCY	2 cut(s)	17, 255
Psp6I	CCWGG	6 cut(s)	4, 631, 696, 841, 912, 958
PspGI	CCWGG	6 cut(s)	4, 631, 696, 841, 912, 958
PspOMI	GGGCCC	1 cut(s)	505
PspPI	GGNCC	6 cut(s)	17, 161, 255, 505, 506, 765
PspPPI	RGGWCCY	2 cut(s)	17, 255
RsaI	GTAC	2 cut(s)	269, 971
RsaNI	GTAC	2 cut(s)	268, 970
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	1 cut(s)	1077
Sau3AI	GATC	4 cut(s)	178, 216, 481, 601
Sau96I	GGNCC	6 cut(s)	17, 161, 255, 505, 506, 765
SchI	GAGTC	1 cut(s)	1112
ScrFI	CCNGG	6 cut(s)	6, 633, 698, 843, 914, 960
SduI	GDGCHC	2 cut(s)	509, 649
SfcI	CTRYAG	1 cut(s)	1044
SinI	GGWCC	4 cut(s)	17, 161, 255, 765
SmlI	CTYRAG	2 cut(s)	59, 407
SmoI	CTYRAG	2 cut(s)	59, 407
Sse9I	AATT	3 cut(s)	9, 445, 745
SsiI	CCGC	7 cut(s)	100, 554, 779, 869, 888, 1064, 1076
SspMI	CTAG	2 cut(s)	771, 945
StyD4I	CCNGG	6 cut(s)	4, 631, 696, 841, 912, 958
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	1148
TaqI	TCGA	1 cut(s)	135
TaqII	GACCGA	1 cut(s)	643
TasI	AATT	3 cut(s)	9, 445, 745
TatI	WGTACW	2 cut(s)	267, 969
TauI	GCSGC	1 cut(s)	1079
TfiI	GAWTC	3 cut(s)	668, 702, 1070
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	2 cut(s)	296, 997
TseFI	GTSAC	4 cut(s)	47, 124, 199, 992
Tsp45I	GTSAC	4 cut(s)	47, 124, 199, 992
TspDTI	ATGAA	2 cut(s)	593, 697
TspGWI	ACGGA	3 cut(s)	187, 603, 621
TspRI	CASTG	2 cut(s)	296, 997
VpaK11BI	GGWCC	4 cut(s)	17, 161, 255, 765
XbaI	TCTAGA	1 cut(s)	944
XceI	RCATGY	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	771, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.