FvH4_6g53430

Sulfite oxidase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
39176526 .. 39181162
4637 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53430.t2

Sequence Viewer

Length: 1125 bp
ATGCCCGGCGTCACAGGTCCCTCAGATTACTCGCTGGAGCCGCCTCGACATCCGAGCCTCAAAATCAACGCCAAGGAGCCTTTCAACGCCGAACCGCCGCGCTCGGCTCTCGGCGCCGCTTACGTCACTCCGGTGGATTTGTTCTACAAGAGAAACCACGGTCCTATTCCAATAGTGGATGACATCCACAGTTACTCTGTTTCCATAACTGGATTGATCGAAAATCCGAAGCAGGTGTTTTTCAAGGATATCATGGCGCTTCCTAAGTACAATGTCACTGCCACAATGCAGTGTGCAGGTAATAGAAGGACAGCTATGAGCCAAACTCGGACTGTCAAGGGAGTAGGATGGGATGTTTCTGCTATAGGAAATGCTGTATGGGGTGGTGCGAAATTGGCTGATGTACTTGAACTTGTGGGAATTCCGAAGTTCACTGGTGCTACTAAATCTGGTGGAAAACATGTTGAGTTTGTAAGCGTTGATAGGTGTAAGGAGGAAAATGGAGGCCCATACAAAGCATCAATTCCACTGATTCAGGCCACAAGCCCGGATGCAGATGTTTTACTTGCTTATGAGATGAACGGAGAGACCCTAAACAGGGATCATGGCTATCCATTGCGTGGGATTGTGCCTGGTGTTATTGGTGCCCGTTCTGTTAAATGGCTTGATTCGATTAACGTCATTGCAGAGGAATGTCAGGGTTTCTTTATGCAAAAAGACTACAAAATGTTTCCACCTTCAGTAAACTGGGATAACATTAATTGGTCGACCAGGAGGCCACAAATGGATTTTCCTGTCCAGTGTGTAATTTGCTCTCTAGAGGATGTGAATGCATTAAAGCCTGGAAAGGTAAAAGTTAGTGGGTATGCAGCATCAGGAGGTGGTCGTGGGATCGAGAGAGTTGATATTTCTGTTGATGGTGGCAATACCTGGGTTGAAGCATCTAGACATCAGCAACCTGGCATCCCATATATTGCTGAGTCCACATGCAGTGACAAATGGGCATGGGTGGATTCAGCAGCAAATGTACAACCTGAAAAAGTGGAGGACATCTGGAACTTGAGAGGGATACTGAACACTTCATGGCATAGAGTACAAGTTCGAGTTGGCCACTCAAATTTGTAG

Protein Analysis

375

Amino Acids

40.93

Weight (kDa)

7.08

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_molyb PF00174 53 - 235 4e-55 Oxidoreductase molybdopterin binding domain
Mo-co_dimer PF03404 260 - 388 2.5e-37 Mo-co oxidoreductase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
Acc36I ACCTGC 2 cut(s) 223, 287
AccB1I GGYRCC 2 cut(s) 113, 644
AccB7I CCANNNNNTGG 1 cut(s) 620
AccI GTMKAC 1 cut(s) 767
AccII CGCG 1 cut(s) 100
AciI CCGC 4 cut(s) 41, 95, 98, 117
AclWI GGATC 2 cut(s) 609, 899
AcoI YGGCCR 1 cut(s) 1108
AcsI RAATTY 2 cut(s) 420, 1117
AcuI CTGAAG 1 cut(s) 723
AcyI GRCGYC 2 cut(s) 9, 114
AfaI GTAC 4 cut(s) 269, 405, 1029, 1095
AfiI CCNNNNNNNGG 3 cut(s) 597, 598, 620
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 4 cut(s) 85, 244, 410, 938
AjnI CCWGG 5 cut(s) 631, 770, 841, 929, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw26I GTCTC 1 cut(s) 581
AlwI GGATC 2 cut(s) 609, 899
AoxI GGCC 4 cut(s) 505, 537, 776, 1108
ApeKI GCWGC 2 cut(s) 869, 1019
ApoI RAATTY 2 cut(s) 420, 1117
AseI ATTAAT 1 cut(s) 759
AspLEI GCGC 3 cut(s) 102, 116, 259
AspS9I GGNCC 3 cut(s) 17, 161, 506
AsuC2I CCSGG 2 cut(s) 6, 548
AvaII GGWCC 2 cut(s) 17, 161
BaeGI GKGCMC 1 cut(s) 649
BalI TGGCCA 1 cut(s) 1110
BanI GGYRCC 2 cut(s) 113, 644
BbvI GCAGC 2 cut(s) 881, 1031
BccI CCATC 2 cut(s) 342, 911
BciT130I CCWGG 5 cut(s) 633, 772, 843, 931, 960
BciVI GTATCC 1 cut(s) 1062
BcnI CCSGG 2 cut(s) 6, 548
BcoDI GTCTC 1 cut(s) 581
BfaI CTAG 2 cut(s) 818, 945
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 2 cut(s) 117, 260
BfuAI ACCTGC 2 cut(s) 223, 287
BfuI GTATCC 1 cut(s) 1062
BisI GCNGC 5 cut(s) 41, 98, 117, 870, 1020
BlsI GCNGC 5 cut(s) 42, 99, 118, 871, 1021
Bme1390I CCNGG 7 cut(s) 6, 548, 633, 772, 843, 931, 960
Bme18I GGWCC 2 cut(s) 17, 161
BmgT120I GGNCC 3 cut(s) 17, 161, 506
BmiI GGNNCC 5 cut(s) 19, 39, 78, 115, 646
BmrFI CCNGG 7 cut(s) 6, 548, 633, 772, 843, 931, 960
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 5 cut(s) 527, 541, 881, 950, 972
BmuI ACTGGG 1 cut(s) 757
BplI GAGNNNNNCTC 2 cut(s) 310, 342
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 1081
BpuMI CCSGG 2 cut(s) 6, 548
BsaHI GRCGYC 2 cut(s) 9, 114
BsaI GGTCTC 1 cut(s) 581
BsaJI CCNNGG 3 cut(s) 72, 157, 930
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 3 cut(s) 597, 598, 620
Bse1I ACTGG 4 cut(s) 214, 439, 752, 799
Bse3DI GCAATG 2 cut(s) 614, 681
BseBI CCWGG 5 cut(s) 633, 772, 843, 931, 960
BseDI CCNNGG 3 cut(s) 72, 157, 930
BseGI GGATG 8 cut(s) 49, 183, 184, 353, 358, 556, 829, 963
BseLI CCNNNNNNNGG 3 cut(s) 597, 598, 620
BseMI GCAATG 2 cut(s) 614, 681
BseMII CTCAG 2 cut(s) 36, 969
BseNI ACTGG 4 cut(s) 214, 439, 752, 799
BseSI GKGCMC 1 cut(s) 649
BseXI GCAGC 2 cut(s) 881, 1031
BsgI GTGCAG 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 4 cut(s) 507, 539, 778, 1110
BshNI GGYRCC 2 cut(s) 113, 644
BsiSI CCGG 3 cut(s) 6, 131, 548
BslFI GGGAC 1 cut(s) 3
BslI CCNNNNNNNGG 3 cut(s) 597, 598, 620
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 3
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 4 cut(s) 507, 539, 778, 1110
Bso31I GGTCTC 1 cut(s) 581
Bsp1286I GDGCHC 1 cut(s) 649
Bsp1407I TGTACA 1 cut(s) 1027
Bsp143I GATC 3 cut(s) 216, 601, 891
BspACI CCGC 4 cut(s) 41, 95, 98, 117
BspANI GGCC 4 cut(s) 507, 539, 778, 1110
BspCNI CTCAG 2 cut(s) 35, 970
BspFNI CGCG 1 cut(s) 100
BspLI GGNNCC 5 cut(s) 19, 39, 78, 115, 646
BspMI ACCTGC 2 cut(s) 223, 287
BspPI GGATC 2 cut(s) 609, 899
BspT107I GGYRCC 2 cut(s) 113, 644
BspTNI GGTCTC 1 cut(s) 581
BsrDI GCAATG 2 cut(s) 614, 681
BsrGI TGTACA 1 cut(s) 1027
BsrI ACTGG 4 cut(s) 214, 439, 752, 799
BssECI CCNNGG 3 cut(s) 72, 157, 930
BssMI GATC 3 cut(s) 216, 601, 891
BssNI GRCGYC 2 cut(s) 9, 114
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 5 cut(s) 633, 772, 843, 931, 960
Bst4CI ACNGT 3 cut(s) 161, 191, 334
BstACI GRCGYC 2 cut(s) 9, 114
BstAUI TGTACA 1 cut(s) 1027
BstDEI CTNAG 3 cut(s) 22, 264, 978
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 8 cut(s) 49, 183, 184, 353, 358, 556, 829, 963
BstFNI CGCG 1 cut(s) 100
BstH2I RGCGCY 2 cut(s) 117, 260
BstHHI GCGC 3 cut(s) 102, 116, 259
BstKTI GATC 3 cut(s) 219, 604, 894
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 3 cut(s) 216, 601, 891
BstMWI GCNNNNNNNGC 3 cut(s) 40, 113, 395
BstNI CCWGG 5 cut(s) 633, 772, 843, 931, 960
BstNSI RCATGY 2 cut(s) 464, 990
BstSCI CCNGG 7 cut(s) 4, 546, 631, 770, 841, 929, 958
BstSFI CTRYAG 1 cut(s) 363
BstSLI GKGCMC 1 cut(s) 649
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 2 cut(s) 881, 1031
BsuI GTATCC 1 cut(s) 1062
BsuRI GGCC 4 cut(s) 507, 539, 778, 1110
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 8 cut(s) 49, 183, 184, 353, 358, 556, 829, 963
BtsI GCAGTG 3 cut(s) 276, 296, 997
BtsIMutI CAGTG 6 cut(s) 276, 296, 432, 527, 806, 997
BveI ACCTGC 2 cut(s) 223, 287
CfoI GCGC 3 cut(s) 102, 116, 259
Cfr13I GGNCC 3 cut(s) 17, 161, 506
Csp6I GTAC 4 cut(s) 268, 404, 1028, 1094
CviAII CATG 6 cut(s) 253, 461, 605, 987, 1005, 1083
CviQI GTAC 4 cut(s) 268, 404, 1028, 1094
DdeI CTNAG 3 cut(s) 22, 264, 978
DinI GGCGCC 1 cut(s) 115
DpnI GATC 3 cut(s) 218, 603, 893
DpnII GATC 3 cut(s) 216, 601, 891
EaeI YGGCCR 1 cut(s) 1108
Eco130I CCWWGG 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 581
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 17, 161
Eco57I CTGAAG 1 cut(s) 723
EcoO109I RGGNCCY 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 5 cut(s) 631, 770, 841, 929, 958
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 835
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 6 cut(s) 256, 464, 608, 990, 1008, 1086
FaqI GGGAC 1 cut(s) 3
FatI CATG 6 cut(s) 252, 460, 604, 986, 1004, 1082
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 5 cut(s) 41, 98, 117, 870, 1020
FokI GGATG 8 cut(s) 36, 170, 191, 360, 365, 563, 836, 950
Fsp4HI GCNGC 5 cut(s) 41, 98, 117, 870, 1020
FspBI CTAG 2 cut(s) 818, 945
GlaI GCGC 3 cut(s) 101, 115, 258
GluI GCNGC 5 cut(s) 41, 98, 117, 870, 1020
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 2 cut(s) 117, 260
HaeIII GGCC 4 cut(s) 507, 539, 778, 1110
HapII CCGG 3 cut(s) 6, 131, 548
HhaI GCGC 3 cut(s) 102, 116, 259
Hin1I GRCGYC 2 cut(s) 9, 114
Hin1II CATG 6 cut(s) 256, 464, 608, 990, 1008, 1086
Hin6I GCGC 3 cut(s) 100, 114, 257
HinP1I GCGC 3 cut(s) 100, 114, 257
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HinfI GANTC 4 cut(s) 532, 668, 980, 1013
HpaII CCGG 3 cut(s) 6, 131, 548
Hpy166II GTNNAC 4 cut(s) 432, 745, 768, 984
Hpy188I TCNGA 5 cut(s) 25, 54, 228, 330, 426
Hpy188III TCNNGA 5 cut(s) 818, 876, 895, 945, 1054
Hpy8I GTNNAC 4 cut(s) 432, 745, 768, 984
HpyAV CCTTC 2 cut(s) 300, 747
HpyCH4III ACNGT 3 cut(s) 161, 191, 334
HpyCH4IV ACGT 2 cut(s) 123, 678
HpyCH4V TGCA 8 cut(s) 289, 296, 554, 686, 712, 833, 869, 990
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 113, 395
HpyF3I CTNAG 3 cut(s) 22, 264, 978
HpySE526I ACGT 2 cut(s) 123, 678
Hsp92I GRCGYC 2 cut(s) 9, 114
Hsp92II CATG 6 cut(s) 256, 464, 608, 990, 1008, 1086
HspAI GCGC 3 cut(s) 100, 114, 257
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 3 cut(s) 216, 601, 891
LmnI GCTCC 2 cut(s) 37, 76
Lsp1109I GCAGC 2 cut(s) 881, 1031
LweI GCATC 5 cut(s) 527, 541, 881, 950, 972
MaeI CTAG 2 cut(s) 818, 945
MaeII ACGT 2 cut(s) 123, 678
MaeIII GTNAC 5 cut(s) 10, 124, 191, 274, 992
MalI GATC 3 cut(s) 218, 603, 893
MboI GATC 3 cut(s) 216, 601, 891
MhlI GDGCHC 1 cut(s) 649
MlsI TGGCCA 1 cut(s) 1110
MluCI AATT 6 cut(s) 392, 420, 522, 760, 807, 1117
MluNI TGGCCA 1 cut(s) 1110
Mly113I GGCGCC 1 cut(s) 114
MlyI GAGTC 1 cut(s) 989
Mox20I TGGCCA 1 cut(s) 1110
Mph1103I ATGCAT 1 cut(s) 835
MscI TGGCCA 1 cut(s) 1110
MseI TTAA 4 cut(s) 657, 675, 759, 836
MslI CAYNNNNRTG 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 1110
MspI CCGG 3 cut(s) 6, 131, 548
MspR9I CCNGG 7 cut(s) 6, 548, 633, 772, 843, 931, 960
Mva1269I GAATGC 1 cut(s) 835
MvaI CCWGG 5 cut(s) 633, 772, 843, 931, 960
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 3 cut(s) 40, 113, 395
NarI GGCGCC 1 cut(s) 114
NciI CCSGG 2 cut(s) 6, 548
NdeII GATC 3 cut(s) 216, 601, 891
NlaIII CATG 6 cut(s) 256, 464, 608, 990, 1008, 1086
NlaIV GGNNCC 5 cut(s) 19, 39, 78, 115, 646
NmeAIII GCCGAG 2 cut(s) 83, 90
NmuCI GTSAC 4 cut(s) 10, 124, 274, 992
NsiI ATGCAT 1 cut(s) 835
NspI RCATGY 2 cut(s) 464, 990
OliI CACNNNNGTG 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 223
PciI ACATGT 1 cut(s) 460
PctI GAATGC 1 cut(s) 835
PfeI GAWTC 3 cut(s) 532, 668, 1013
PflMI CCANNNNNTGG 1 cut(s) 620
PkrI GCNGC 5 cut(s) 42, 99, 118, 871, 1021
PleI GAGTC 1 cut(s) 988
PluTI GGCGCC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 988
PpuMI RGGWCCY 1 cut(s) 17
PscI ACATGT 1 cut(s) 460
PshBI ATTAAT 1 cut(s) 759
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 5 cut(s) 631, 770, 841, 929, 958
PspGI CCWGG 5 cut(s) 631, 770, 841, 929, 958
PspN4I GGNNCC 5 cut(s) 19, 39, 78, 115, 646
PspPI GGNCC 3 cut(s) 17, 161, 506
PspPPI RGGWCCY 1 cut(s) 17
RsaI GTAC 4 cut(s) 269, 405, 1029, 1095
RsaNI GTAC 4 cut(s) 268, 404, 1028, 1094
RseI CAYNNNNRTG 1 cut(s) 131
SalI GTCGAC 1 cut(s) 766
SaqAI TTAA 4 cut(s) 657, 675, 759, 836
SatI GCNGC 5 cut(s) 41, 98, 117, 870, 1020
Sau3AI GATC 3 cut(s) 216, 601, 891
Sau96I GGNCC 3 cut(s) 17, 161, 506
SchI GAGTC 1 cut(s) 989
ScrFI CCNGG 7 cut(s) 6, 548, 633, 772, 843, 931, 960
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 5 cut(s) 527, 541, 881, 950, 972
SfcI CTRYAG 1 cut(s) 363
SfoI GGCGCC 1 cut(s) 115
SinI GGWCC 2 cut(s) 17, 161
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 1060
SmoI CTYRAG 1 cut(s) 1060
Sse9I AATT 6 cut(s) 392, 420, 522, 760, 807, 1117
SsiI CCGC 4 cut(s) 41, 95, 98, 117
SspDI GGCGCC 1 cut(s) 113
SspMI CTAG 2 cut(s) 818, 945
StyD4I CCNGG 7 cut(s) 4, 546, 631, 770, 841, 929, 958
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 3 cut(s) 161, 191, 334
TaiI ACGT 2 cut(s) 126, 681
TaqI TCGA 6 cut(s) 46, 219, 671, 767, 894, 1102
TasI AATT 6 cut(s) 392, 420, 522, 760, 807, 1117
TatI WGTACW 4 cut(s) 267, 403, 1027, 1093
TauI GCSGC 3 cut(s) 43, 100, 119
TfiI GAWTC 3 cut(s) 532, 668, 1013
Tru1I TTAA 4 cut(s) 657, 675, 759, 836
Tru9I TTAA 4 cut(s) 657, 675, 759, 836
TscAI CASTG 6 cut(s) 283, 296, 439, 534, 806, 997
TseFI GTSAC 4 cut(s) 10, 124, 274, 992
TseI GCWGC 2 cut(s) 869, 1019
Tsp45I GTSAC 4 cut(s) 10, 124, 274, 992
TspDTI ATGAA 2 cut(s) 593, 1071
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 6 cut(s) 283, 296, 439, 534, 806, 997
Van91I CCANNNNNTGG 1 cut(s) 620
VpaK11BI GGWCC 2 cut(s) 17, 161
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 2 cut(s) 420, 1117
XbaI TCTAGA 2 cut(s) 817, 944
XceI RCATGY 2 cut(s) 464, 990
XmiI GTMKAC 1 cut(s) 767
XspI CTAG 2 cut(s) 818, 945
Zsp2I ATGCAT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.