Rroxscaffold_1G00020490

Sulfite oxidase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
24828182 .. 24831277
3096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020490.1

Sequence Viewer

Length: 405 bp
ATGGAGAGGTTGATTGAATACCTAAATAGTAATAGCCAAGACGTATGGAACAACATACCTAAAAAACCTTGCAGGGGCTTCTTTATGCAAAAAGACTACAAAATGTTTCCACCTTCAGTAAACTGGGATAACATTAATCGGTCCACCAGGAGGCCACAAATGGATTTTCCTGTCCAGTGTGTAATTTGTTCTTTAGAGGATGTGAATGCTGTAAAGCCTGGAAAGTGTTATGAGTGTTCATCTGATGAGTTCAAAGTCTTTGGTTGGAGTAGCTGGAGTTGCATTAGAGATTCAAAAGAAGAAGGGGCGGGACGTGTATGTTATGGTGAGCTACTTGGTGGGAATTCTGGAAGTTTACTTAGTACTGACTATGTAGTTTTGTCAAGTGAATTTAACACTTCATAG

Protein Analysis

134

Amino Acids

15.29

Weight (kDa)

5.17

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 308
AcsI RAATTY 2 cut(s) 343, 389
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 2 cut(s) 74, 150
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 3 cut(s) 17, 253, 294
AjiI CACGTC 1 cut(s) 314
AjnI CCWGG 2 cut(s) 146, 217
AluBI AGCT 2 cut(s) 273, 331
AluI AGCT 2 cut(s) 273, 331
AoxI GGCC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 343, 389
AseI ATTAAT 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 141
BciT130I CCWGG 2 cut(s) 148, 219
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 2 cut(s) 148, 219
Bme18I GGWCC 1 cut(s) 141
BmgBI CACGTC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 141
BmrFI CCNGG 2 cut(s) 148, 219
BmrI ACTGGG 1 cut(s) 133
BmuI ACTGGG 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 295
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 150
Bse1I ACTGG 2 cut(s) 128, 175
BseBI CCWGG 2 cut(s) 148, 219
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 74, 150
BseNI ACTGG 2 cut(s) 128, 175
BshFI GGCC 1 cut(s) 154
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 74, 150
BsmFI GGGAC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 1 cut(s) 154
BspACI CCGC 1 cut(s) 308
BspANI GGCC 1 cut(s) 154
BsrI ACTGG 2 cut(s) 128, 175
Bst2UI CCWGG 2 cut(s) 148, 219
BstDEI CTNAG 1 cut(s) 359
BstF5I GGATG 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstNI CCWGG 2 cut(s) 148, 219
BstSCI CCNGG 2 cut(s) 146, 217
BsuRI GGCC 1 cut(s) 154
BtrI CACGTC 1 cut(s) 314
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 363
CviJI RGCY 6 cut(s) 36, 78, 154, 217, 273, 331
CviKI_1 RGCY 6 cut(s) 36, 78, 154, 217, 273, 331
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 343
EcoRII CCWGG 2 cut(s) 146, 217
FaiI YATR 8 cut(s) 46, 56, 86, 231, 319, 324, 372, 403
FaqI GGGAC 1 cut(s) 324
FauI CCCGC 1 cut(s) 301
FokI GGATG 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 1 cut(s) 154
HinfI GANTC 1 cut(s) 290
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 3 cut(s) 121, 144, 356
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 348
Hpy8I GTNNAC 3 cut(s) 121, 144, 356
HpyAV CCTTC 2 cut(s) 123, 296
HpyCH4IV ACGT 2 cut(s) 42, 313
HpyCH4V TGCA 3 cut(s) 72, 88, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 2 cut(s) 42, 313
MaeII ACGT 2 cut(s) 42, 313
MboII GAAGA 1 cut(s) 311
MluCI AATT 3 cut(s) 183, 343, 389
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 2 cut(s) 144, 190
MseI TTAA 2 cut(s) 135, 393
MspR9I CCNGG 2 cut(s) 148, 219
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 2 cut(s) 148, 219
MwoI GCNNNNNNNGC 1 cut(s) 279
PctI GAATGC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 290
PshBI ATTAAT 1 cut(s) 135
Psp6I CCWGG 2 cut(s) 146, 217
PspGI CCWGG 2 cut(s) 146, 217
PspPI GGNCC 1 cut(s) 141
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 135, 393
Sau96I GGNCC 1 cut(s) 141
ScaI AGTACT 1 cut(s) 364
ScrFI CCNGG 2 cut(s) 148, 219
SetI ASST 9 cut(s) 11, 24, 45, 61, 70, 115, 275, 316, 333
SinI GGWCC 1 cut(s) 141
Sse9I AATT 3 cut(s) 183, 343, 389
SsiI CCGC 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 146, 217
TaiI ACGT 2 cut(s) 45, 316
TaqII GACCGA 1 cut(s) 129
TasI AATT 3 cut(s) 183, 343, 389
TatI WGTACW 1 cut(s) 362
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 2 cut(s) 135, 393
Tru9I TTAA 2 cut(s) 135, 393
TscAI CASTG 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 228, 390
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 141
VspI ATTAAT 1 cut(s) 135
XapI RAATTY 2 cut(s) 343, 389
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.