Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Reverse (-)

7871020 .. 7876260

Gene Structure 5241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG098700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAAACAAATGACCTCAGGTTCTACCACAACTTAAATCTTGTGGGAATACCAAAGTTGATAGGCGCCACTAAATCTGGTGGAAATCATGTTGAGTTTGTAAGCGTTGATAGGTGTAAGGAGGAGAACGGAGGCCTTTACAAGGCATCAATTCCATTGATTCAGGCCACAAGCCCAGAAGCAGATGTTTTACTTGCTTATGAGATGAATGGAGAGGTGAAGACCCTAAATAGGGATCATGGGTATCCATTGCGTGTGGTTGTACCTGGTGTTATTGGCACCCATTCTGTTAAATGGCTTGATTCTATTAATGTCATTGCAGAGGAATGTAAGGGCTTCTTTATGCAAAAAGACTACAAAATGTTTCCACCTTTAGTAAACTGGGATAACATTAATTGGTCCACCAAGAGGCTACAAATGGATTTTCCTGTCCAGTGTGGAATTTGTTCTTCAGATGATGTGAATGCTGTAAAGCCTGGAAAGGTGCGTGATTTGGCTGGTGCAAATCCCATAATATTAGTCATTACTAAGGTATTAAGCAGCTCATTGGTACTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

186

Amino Acids

20.59

Weight (kDa)

6.41

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	21 - 113	6.2e-25	Oxidoreductase molybdopterin binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	65, 278
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	441
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	264, 552
AfiI	CCNNNNNNNGG	4 cut(s)	142, 231, 232, 408
AjnI	CCWGG	2 cut(s)	265, 475
AluBI	AGCT	1 cut(s)	543
AluI	AGCT	1 cut(s)	543
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	2 cut(s)	133, 165
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	1 cut(s)	441
AseI	ATTAAT	2 cut(s)	309, 393
Asp700I	GAANNNNTTC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	399
AxyI	CCTNAGG	1 cut(s)	17
BaeI	ACNNNNGTAYC	1 cut(s)	542
BanI	GGYRCC	2 cut(s)	65, 278
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	552
BciT130I	CCWGG	2 cut(s)	267, 477
BciVI	GTATCC	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	255
BisI	GCNGC	1 cut(s)	541
BlsI	GCNGC	1 cut(s)	542
Bme1390I	CCNGG	2 cut(s)	267, 477
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	67, 280
BmrFI	CCNGG	2 cut(s)	267, 477
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 231, 232, 408
Bse1I	ACTGG	2 cut(s)	386, 433
Bse21I	CCTNAGG	1 cut(s)	17
Bse3DI	GCAATG	2 cut(s)	248, 315
BseBI	CCWGG	2 cut(s)	267, 477
BseLI	CCNNNNNNNGG	4 cut(s)	142, 231, 232, 408
BseMI	GCAATG	2 cut(s)	248, 315
BseMII	CTCAG	1 cut(s)	31
BseNI	ACTGG	2 cut(s)	386, 433
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	552
BshFI	GGCC	2 cut(s)	135, 167
BshNI	GGYRCC	2 cut(s)	65, 278
BslI	CCNNNNNNNGG	4 cut(s)	142, 231, 232, 408
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	135, 167
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	2 cut(s)	135, 167
BspCNI	CTCAG	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	67, 280
BspPI	GGATC	1 cut(s)	243
BspT107I	GGYRCC	2 cut(s)	65, 278
BsrDI	GCAATG	2 cut(s)	248, 315
BsrI	ACTGG	2 cut(s)	386, 433
BssMI	GATC	1 cut(s)	235
BssNI	GRCGYC	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	267, 477
BstACI	GRCGYC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	17, 528
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstNI	CCWGG	2 cut(s)	267, 477
BstSCI	CCNGG	2 cut(s)	265, 475
BstV1I	GCAGC	1 cut(s)	552
BstV2I	GAAGAC	1 cut(s)	227
Bsu36I	CCTNAGG	1 cut(s)	17
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	135, 167
BtsIMutI	CAGTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	399
CsiI	ACCWGGT	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	263, 551
CviAII	CATG	2 cut(s)	89, 239
CviJI	RGCY	9 cut(s)	135, 167, 174, 298, 336, 412, 475, 497, 543
CviKI_1	RGCY	9 cut(s)	135, 167, 174, 298, 336, 412, 475, 497, 543
CviQI	GTAC	2 cut(s)	263, 551
DdeI	CTNAG	2 cut(s)	17, 528
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	265, 475
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
FaeI	CATG	2 cut(s)	92, 242
FaiI	YATR	6 cut(s)	90, 201, 240, 344, 512, 557
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FatI	CATG	2 cut(s)	88, 238
Fnu4HI	GCNGC	1 cut(s)	541
Fsp4HI	GCNGC	1 cut(s)	541
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	541
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	135, 167
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	92, 242
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	160, 302
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	379, 402
Hpy188I	TCNGA	1 cut(s)	454
Hpy8I	GTNNAC	2 cut(s)	379, 402
HpyCH4V	TGCA	3 cut(s)	320, 346, 503
HpyF3I	CTNAG	2 cut(s)	17, 528
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	92, 242
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	235
Lsp1109I	GCAGC	1 cut(s)	552
LweI	GCATC	1 cut(s)	155
MabI	ACCWGGT	1 cut(s)	265
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	232, 441
MluCI	AATT	3 cut(s)	150, 394, 441
Mly113I	GGCGCC	1 cut(s)	66
MnlI	CCTC	6 cut(s)	26, 115, 125, 208, 316, 402
MroXI	GAANNNNTTC	1 cut(s)	445
MseI	TTAA	5 cut(s)	35, 291, 309, 393, 536
MspR9I	CCNGG	2 cut(s)	267, 477
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	2 cut(s)	267, 477
NarI	GGCGCC	1 cut(s)	66
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	2 cut(s)	92, 242
NlaIV	GGNNCC	2 cut(s)	67, 280
PceI	AGGCCT	1 cut(s)	135
PctI	GAATGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	2 cut(s)	160, 302
PkrI	GCNGC	1 cut(s)	542
PluTI	GGCGCC	1 cut(s)	69
PshBI	ATTAAT	2 cut(s)	309, 393
Psp6I	CCWGG	2 cut(s)	265, 475
PspGI	CCWGG	2 cut(s)	265, 475
PspN4I	GGNNCC	2 cut(s)	67, 280
PspPI	GGNCC	1 cut(s)	399
RsaI	GTAC	2 cut(s)	264, 552
RsaNI	GTAC	2 cut(s)	263, 551
SaqAI	TTAA	5 cut(s)	35, 291, 309, 393, 536
SatI	GCNGC	1 cut(s)	541
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	399
ScrFI	CCNGG	2 cut(s)	267, 477
SetI	ASST	9 cut(s)	18, 23, 116, 219, 268, 373, 486, 534, 545
SexAI	ACCWGGT	1 cut(s)	265
SfaNI	GCATC	1 cut(s)	155
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	399
Sse9I	AATT	3 cut(s)	150, 394, 441
SseBI	AGGCCT	1 cut(s)	135
SspDI	GGCGCC	1 cut(s)	65
SspI	AATATT	1 cut(s)	516
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	265, 475
TasI	AATT	3 cut(s)	150, 394, 441
TfiI	GAWTC	2 cut(s)	160, 302
Tru1I	TTAA	5 cut(s)	35, 291, 309, 393, 536
Tru9I	TTAA	5 cut(s)	35, 291, 309, 393, 536
TscAI	CASTG	1 cut(s)	440
TseI	GCWGC	1 cut(s)	540
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	399
VspI	ATTAAT	2 cut(s)	309, 393
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.