Rh4AG300000

Sulfite oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002104
Physical Location & Seq
Forward (+)
61295009 .. 61297508
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG300000.1

Sequence Viewer

Length: 630 bp
ATGTCAAGCTTAAGAGCTCCGTCAAATTATTCTGAAGAACCACCTCGCCATCCAAGTCTCGTAGTAAATTCCCAGGAACCTTTCAATGCAGAGCCACCACGTTCGGCGTTGATAGCCTCTTATGTGACCCCAGTAGATTTGTTCTACAAGCGAAACCATGGACCAATTCCTGTGCTTGATGATATTGAAAGGTATCGAGTTACTATATGCGGTTTGGTAGAAAAGCCTCTGGAATTGTCAATGGCAGACATCAGGAAGCTTTCGAAGCACACTGTGACAGCAACATTGCAAATTGTAGTTCATGGATATGCAGTGTCTGGAGGCGGTCGGGGGATTGAGCGAGTGGATGTATCTTTCGATGGAGGCAAGACATGGGAGGAAGCAATCAGATACCAGAAGAGTACTGAAGTCCCATATGTTGCTGATGATACAAGTAGTGGTGACAAGTGGGCATGGGTGCTGTTTAAGGCTGAAGCAGATGTCTCTCACACTACTGAAATCGTCACCAAAGCAGTTGATATAGCTGGAAATGTCCAACCCGAAAATGTGGGTGTCATCTGGAACCTGAGAGGAATACTAAACACGTCTTGGCACAGGGTCCGTGTTGAAGTGGAGGACCCTAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 ko01100 ko01120 map00920 map01100 map01120
Pfam Domains
Protein Families
Mo-co_dimer Oxidored_molyb

Protein Analysis

209

Amino Acids

23.28

Weight (kDa)

5.53

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_molyb PF00174 53 - 97 8.7e-08 Oxidoreductase molybdopterin binding domain
Mo-co_dimer PF03404 95 - 204 6.6e-32 Mo-co oxidoreductase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 210, 324
AcsI RAATTY 1 cut(s) 67
AcuI CTGAAG 3 cut(s) 54, 426, 492
AdeI CACNNNGTG 1 cut(s) 274
AfaI GTAC 1 cut(s) 403
AflII CTTAAG 1 cut(s) 10
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 3 cut(s) 85, 188, 608
AjiI CACGTC 1 cut(s) 585
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 4 cut(s) 9, 17, 259, 524
AluI AGCT 4 cut(s) 9, 17, 259, 524
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 62, 487
AlwNI CAGNNNCTG 1 cut(s) 317
ApoI RAATTY 1 cut(s) 67
AspS9I GGNCC 3 cut(s) 161, 598, 616
AsuHPI GGTGA 2 cut(s) 452, 496
AsuII TTCGAA 1 cut(s) 263
AvaII GGWCC 3 cut(s) 161, 598, 616
BanII GRGCYC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 19
BccI CCATC 2 cut(s) 57, 353
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 62, 487
BfrI CTTAAG 1 cut(s) 10
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 3 cut(s) 161, 598, 616
BmgBI CACGTC 1 cut(s) 585
BmgT120I GGNCC 3 cut(s) 161, 598, 616
BmiI GGNNCC 4 cut(s) 78, 563, 599, 618
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 125
BmuI ACTGGG 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 72, 157
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 72, 157
BseGI GGATG 2 cut(s) 49, 352
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 328
BsiEI CGRYCG 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 19
BslFI GGGAC 1 cut(s) 395
BsmAI GTCTC 2 cut(s) 62, 487
BsmFI GGGAC 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 19
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 2 cut(s) 210, 324
BspCNI CTCAG 1 cut(s) 558
BspLI GGNNCC 4 cut(s) 78, 563, 599, 618
BspT104I TTCGAA 1 cut(s) 263
BspTI CTTAAG 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 284
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 72, 157
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 392
BstAFI CTTAAG 1 cut(s) 10
BstBI TTCGAA 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 566
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 49, 352
BstMAI GTCTC 2 cut(s) 62, 487
BstMCI CGRYCG 1 cut(s) 328
BstMWI GCNNNNNNNGC 2 cut(s) 113, 265
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 585
BtsCI GGATG 2 cut(s) 49, 352
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 270, 318
CaiI CAGNNNCTG 1 cut(s) 317
Cfr13I GGNCC 3 cut(s) 161, 598, 616
Csp6I GTAC 1 cut(s) 402
CviAII CATG 4 cut(s) 158, 302, 372, 453
CviJI RGCY 8 cut(s) 9, 17, 94, 116, 226, 259, 470, 524
CviKI_1 RGCY 8 cut(s) 9, 17, 94, 116, 226, 259, 470, 524
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 1 cut(s) 566
DraIII CACNNNGTG 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Ecl136II GAGCTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 3 cut(s) 161, 598, 616
Eco53kI GAGCTC 1 cut(s) 17
Eco57I CTGAAG 3 cut(s) 54, 426, 492
EcoICRI GAGCTC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 616
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 4 cut(s) 161, 305, 375, 456
FaqI GGGAC 1 cut(s) 395
FatI CATG 4 cut(s) 157, 301, 371, 452
FauNDI CATATG 1 cut(s) 415
FokI GGATG 2 cut(s) 36, 359
FriOI GRGCYC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 339
Hin1II CATG 4 cut(s) 161, 305, 375, 456
HindIII AAGCTT 2 cut(s) 7, 257
HphI GGTGA 2 cut(s) 452, 496
Hpy188I TCNGA 3 cut(s) 34, 389, 629
Hpy188III TCNNGA 4 cut(s) 230, 253, 318, 559
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 2 cut(s) 100, 584
HpyCH4V TGCA 3 cut(s) 89, 289, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 265
HpyF3I CTNAG 1 cut(s) 566
HpySE526I ACGT 2 cut(s) 100, 584
Hsp92II CATG 4 cut(s) 161, 305, 375, 456
LmnI GCTCC 1 cut(s) 22
MaeII ACGT 2 cut(s) 100, 584
MaeIII GTNAC 5 cut(s) 124, 199, 274, 440, 502
MboII GAAGA 2 cut(s) 47, 409
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 6 cut(s) 25, 67, 165, 233, 291, 622
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 8 cut(s) 54, 127, 237, 314, 356, 370, 563, 607
MseI TTAA 2 cut(s) 11, 465
MslI CAYNNNNRTG 1 cut(s) 306
MspCI CTTAAG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 113, 265
NcoI CCATGG 1 cut(s) 157
NdeI CATATG 1 cut(s) 415
NlaIII CATG 4 cut(s) 161, 305, 375, 456
NlaIV GGNNCC 4 cut(s) 78, 563, 599, 618
NmuCI GTSAC 4 cut(s) 124, 274, 440, 502
NspV TTCGAA 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 616
Psp124BI GAGCTC 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 616
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 4 cut(s) 78, 563, 599, 618
PspPI GGNCC 3 cut(s) 161, 598, 616
PspPPI RGGWCCY 1 cut(s) 616
PstNI CAGNNNCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 11, 465
Sau96I GGNCC 3 cut(s) 161, 598, 616
ScaI AGTACT 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 263
SinI GGWCC 3 cut(s) 161, 598, 616
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 6 cut(s) 25, 67, 165, 233, 291, 622
SsiI CCGC 2 cut(s) 210, 324
SstI GAGCTC 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 2 cut(s) 103, 587
TaqI TCGA 3 cut(s) 196, 263, 357
TasI AATT 6 cut(s) 25, 67, 165, 233, 291, 622
TatI WGTACW 1 cut(s) 401
Tru1I TTAA 2 cut(s) 11, 465
Tru9I TTAA 2 cut(s) 11, 465
TscAI CASTG 2 cut(s) 277, 318
TseFI GTSAC 4 cut(s) 124, 274, 440, 502
Tsp45I GTSAC 4 cut(s) 124, 274, 440, 502
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 2 cut(s) 9, 590
TspRI CASTG 2 cut(s) 277, 318
Vha464I CTTAAG 1 cut(s) 10
VpaK11BI GGWCC 3 cut(s) 161, 598, 616
XapI RAATTY 1 cut(s) 67
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.