Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Reverse (-)

8057172 .. 8058760

Gene Structure 1589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42628

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGATTCATTCCCTGCTTTTTCAGGCGCCACTAAATCTGGTGGAAATCATGTTGAGTTTGTAAGCGTTGATAGGTGTAAGGAGGAGAACGGAGGCCTTTACAAGGCATCAATTCCATTGATTCAGGCCACAAGCCCAGAAGCAGATGTTTTACTTGCTTATGAGATGAATGGAGAGGTGAAGACCCTAAATAGGGATCATGGGTATCCATTGCGTGTGGTTGTACCTGGTGTTATTGGCACCCATTCTGTTAAATGGCTTGATTCTATTAATGTCATTGCAGAGGAATGTAAGGGCTTCTTTATGCAAAAAGACTACAAAATGTTTCCACCTTTAGTAAACTGGGATAACATTAATTGGTCCACCAAGAGGCTACAAATGGATTTTCCTGTCCAGTGTGGAATTTGTTCTTCAGATGATGTGAATGCTGTAAAGCCTGGAAAGGTTAGTTCTATTTGCAAACTGCAATATTTTCCTTCTCTTTATGCAATTGAATATATCTATTGTTTACTTCACATTATGGCATGCACAAAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

179

Amino Acids

19.98

Weight (kDa)

6.07

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	12 - 100	1.5e-24	Oxidoreductase molybdopterin binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	26, 239
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	402
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	4 cut(s)	103, 192, 193, 369
AgsI	TTSAA	1 cut(s)	494
AjnI	CCWGG	2 cut(s)	226, 436
AlwI	GGATC	1 cut(s)	204
AoxI	GGCC	2 cut(s)	94, 126
ApoI	RAATTY	1 cut(s)	402
AseI	ATTAAT	2 cut(s)	270, 354
Asp700I	GAANNNNTTC	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	360
BanI	GGYRCC	2 cut(s)	26, 239
BbsI	GAAGAC	1 cut(s)	188
BciT130I	CCWGG	2 cut(s)	228, 438
BciVI	GTATCC	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	216
Bme1390I	CCNGG	2 cut(s)	228, 438
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	2 cut(s)	28, 241
BmrFI	CCNGG	2 cut(s)	228, 438
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	352
BpiI	GAAGAC	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 192, 193, 369
Bse1I	ACTGG	2 cut(s)	347, 394
Bse3DI	GCAATG	2 cut(s)	209, 276
BseBI	CCWGG	2 cut(s)	228, 438
BseLI	CCNNNNNNNGG	4 cut(s)	103, 192, 193, 369
BseMI	GCAATG	2 cut(s)	209, 276
BseNI	ACTGG	2 cut(s)	347, 394
BseRI	GAGGAG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	96, 128
BshNI	GGYRCC	2 cut(s)	26, 239
BslI	CCNNNNNNNGG	4 cut(s)	103, 192, 193, 369
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	96, 128
Bsp143I	GATC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	96, 128
BspLI	GGNNCC	2 cut(s)	28, 241
BspPI	GGATC	1 cut(s)	204
BspT107I	GGYRCC	2 cut(s)	26, 239
BsrDI	GCAATG	2 cut(s)	209, 276
BsrI	ACTGG	2 cut(s)	347, 394
BssMI	GATC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	228, 438
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	526
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstNI	CCWGG	2 cut(s)	228, 438
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	226, 436
BstV2I	GAAGAC	1 cut(s)	188
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	96, 128
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	526
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	360
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	50, 200, 525
CviJI	RGCY	7 cut(s)	96, 128, 135, 259, 297, 373, 436
CviKI_1	RGCY	7 cut(s)	96, 128, 135, 259, 297, 373, 436
CviQI	GTAC	1 cut(s)	224
DinI	GGCGCC	1 cut(s)	28
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco147I	AGGCCT	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	396
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	226, 436
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
FaeI	CATG	3 cut(s)	53, 203, 528
FaiI	YATR	8 cut(s)	51, 162, 201, 305, 486, 498, 521, 526
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	3 cut(s)	49, 199, 524
GlaI	GCGC	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	96, 128
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	53, 203, 528
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	3 cut(s)	5, 121, 263
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	340, 363, 509
Hpy188I	TCNGA	1 cut(s)	415
Hpy8I	GTNNAC	3 cut(s)	340, 363, 509
HpyAV	CCTTC	1 cut(s)	486
HpyCH4V	TGCA	6 cut(s)	281, 307, 459, 466, 488, 528
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	53, 203, 528
HspAI	GCGC	1 cut(s)	27
KasI	GGCGCC	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	196
LweI	GCATC	1 cut(s)	116
MabI	ACCWGGT	1 cut(s)	226
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	193, 402
MfeI	CAATTG	1 cut(s)	489
MluCI	AATT	4 cut(s)	111, 355, 402, 489
Mly113I	GGCGCC	1 cut(s)	27
MnlI	CCTC	5 cut(s)	76, 86, 169, 277, 363
MroXI	GAANNNNTTC	1 cut(s)	406
MseI	TTAA	3 cut(s)	252, 270, 354
MspR9I	CCNGG	2 cut(s)	228, 438
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	2 cut(s)	228, 438
NarI	GGCGCC	1 cut(s)	27
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	53, 203, 528
NlaIV	GGNNCC	2 cut(s)	28, 241
NspI	RCATGY	1 cut(s)	528
PaeI	GCATGC	1 cut(s)	528
PceI	AGGCCT	1 cut(s)	96
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	5, 121, 263
PluTI	GGCGCC	1 cut(s)	30
PshBI	ATTAAT	2 cut(s)	270, 354
Psp6I	CCWGG	2 cut(s)	226, 436
PspGI	CCWGG	2 cut(s)	226, 436
PspN4I	GGNNCC	2 cut(s)	28, 241
PspPI	GGNCC	1 cut(s)	360
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	252, 270, 354
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	360
ScrFI	CCNGG	2 cut(s)	228, 438
SetI	ASST	6 cut(s)	77, 180, 229, 334, 447, 539
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	116
SfoI	GGCGCC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	360
SphI	GCATGC	1 cut(s)	528
Sse9I	AATT	4 cut(s)	111, 355, 402, 489
SseBI	AGGCCT	1 cut(s)	96
SspDI	GGCGCC	1 cut(s)	26
SspI	AATATT	1 cut(s)	470
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	226, 436
TasI	AATT	4 cut(s)	111, 355, 402, 489
TfiI	GAWTC	3 cut(s)	5, 121, 263
Tru1I	TTAA	3 cut(s)	252, 270, 354
Tru9I	TTAA	3 cut(s)	252, 270, 354
TscAI	CASTG	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	360
VspI	ATTAAT	2 cut(s)	270, 354
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	402
XceI	RCATGY	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.