Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Reverse (-)

53917060 .. 53918830

Gene Structure 1771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50734

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTTGAGTTTGAGGAGAACAGAGGCCCCCTACAAGGCATCAATTCCATTGATTCAGGCCACAAGCCCAGAAGCAGATATTTTACTTGCTTATGAGATGAATGGAGAGACCCTAAATAGGGATCATGGGTATCCATTGCGTGTGGTCGTACCTGGTGGCTTGTTTATGCAAAAAGACTACAAAATGTTTCCACCTTCAGTAAACTGGTATAACATTAATTGGTCCACCAGGAGACCACAAATGGATTTTCCTGTCCAGTGTGTAATTTGTTCTTTAGAGGATGTGAATGCTGTAAAGCTTGGAAAGGTTAGTTCTATTTGCAAACTGCAATATTTTCCTTCTCTTTTGCAATTGAATATATCTATTGTTTACTTCACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

127

Amino Acids

14.52

Weight (kDa)

8.46

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	8 - 56	3.8e-15	Oxidoreductase molybdopterin binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	3 cut(s)	34, 117, 118
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	2 cut(s)	151, 227
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	2 cut(s)	101, 226
AlwI	GGATC	1 cut(s)	129
AoxI	GGCC	2 cut(s)	24, 57
AseI	ATTAAT	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	25, 222
AvaII	GGWCC	1 cut(s)	222
BciT130I	CCWGG	2 cut(s)	153, 229
BciVI	GTATCC	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	101, 226
BfuI	GTATCC	1 cut(s)	141
Bme1390I	CCNGG	2 cut(s)	153, 229
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	25, 222
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	153, 229
BmsI	GCATC	1 cut(s)	47
BsaI	GGTCTC	2 cut(s)	101, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 117, 118
Bse1I	ACTGG	2 cut(s)	209, 256
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	153, 229
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	34, 117, 118
BseMI	GCAATG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	209, 256
BseRI	GAGGAG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	26, 59
BslI	CCNNNNNNNGG	3 cut(s)	34, 117, 118
BsmAI	GTCTC	2 cut(s)	101, 226
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	26, 59
Bso31I	GGTCTC	2 cut(s)	101, 226
Bsp143I	GATC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	26, 59
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	129
BspTNI	GGTCTC	2 cut(s)	101, 226
BsrDI	GCAATG	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	209, 256
BssMI	GATC	1 cut(s)	121
Bst2UI	CCWGG	2 cut(s)	153, 229
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	2 cut(s)	101, 226
BstMBI	GATC	1 cut(s)	121
BstNI	CCWGG	2 cut(s)	153, 229
BstSCI	CCNGG	2 cut(s)	151, 227
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	26, 59
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	25, 222
CsiI	ACCWGGT	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	5 cut(s)	26, 59, 66, 159, 298
CviKI_1	RGCY	5 cut(s)	26, 59, 66, 159, 298
CviQI	GTAC	1 cut(s)	149
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco31I	GGTCTC	2 cut(s)	101, 226
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	151, 227
FaeI	CATG	1 cut(s)	128
FaiI	YATR	6 cut(s)	93, 126, 167, 210, 359, 382
FatI	CATG	1 cut(s)	124
FokI	GGATG	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	26, 59
Hin1II	CATG	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	202, 225, 370
Hpy8I	GTNNAC	3 cut(s)	202, 225, 370
HpyAV	CCTTC	2 cut(s)	204, 348
HpyCH4V	TGCA	4 cut(s)	169, 321, 328, 349
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	9 cut(s)	41, 81, 138, 165, 190, 214, 241, 264, 269
LweI	GCATC	1 cut(s)	47
MabI	ACCWGGT	1 cut(s)	151
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MfeI	CAATTG	1 cut(s)	350
MluCI	AATT	4 cut(s)	42, 217, 264, 350
MnlI	CCTC	3 cut(s)	6, 16, 271
MseI	TTAA	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	153, 229
MunI	CAATTG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	2 cut(s)	153, 229
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	52
PshBI	ATTAAT	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	151, 227
PspGI	CCWGG	2 cut(s)	151, 227
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	25, 222
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	2 cut(s)	25, 222
ScrFI	CCNGG	2 cut(s)	153, 229
SetI	ASST	4 cut(s)	154, 196, 300, 309
SexAI	ACCWGGT	1 cut(s)	151
SfaNI	GCATC	1 cut(s)	47
SinI	GGWCC	1 cut(s)	222
Sse9I	AATT	4 cut(s)	42, 217, 264, 350
SspI	AATATT	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	151, 227
TasI	AATT	4 cut(s)	42, 217, 264, 350
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	222
VspI	ATTAAT	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.