FvH4_4g23890

Sulfite oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002104
Physical Location & Seq
Forward (+)
26217014 .. 26220137
3124 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23890.t3

Sequence Viewer

Length: 1176 bp
ATGTCAGGCTTAAGAGCCCCATCAAATTATTCTGAAGAACCACCTCGCCATCCAAGTCTCATGGTAAATTCCCAGGAGCCTTTCAATGCAGAGCCACCACGTTCGGCGTTGATAGCTTCCTATGTGACCCCAGTAGATTTGTTCTACAAGCGAAACCATGGACCAATTCCTGTGCTTGATGACACTGAAAGGTATCGAGTTTCTATATGCGGTTTGGTGGAAAAGCCTCTGGAACTGTCAATGGCGGACATCAAGAAGTTTCCGAAGCACACTGTGACAGTGACATTGCAATGTGCAGGTAATAGGAGGACTGCAATGAGCAAAGTCAAGCCGGTGAAAGGTGTTGGATGGGATGTTTCTGCAATTGGAACCGCCATTTGGGGTGGTGCTAAACTTGCTGATGTTCTTGAACTTGTGGGGATCTCCAAGTTAACATCAGTGTCACCCTTGGGAGGCAAGCATGTTGAGTTTGTTAGTGTAGATATGTGCAAGGAGGAAAAAGGGGGACCTTACAAATCTTCCATTCCATTAATTCAAGCCACAAATTTGGATGCTGAGGTTATACTTGCATATGAAATGAATGGAGAGACTCTAAACAGGGATCATGGATATCCTCTGCGTGTAATTGTTCCTGGTGTAATTGGTGCTCGATCTGTAAAATGGCTTAGTTCCATCGATATTATTGAAAAAGAATGCCAGGGATTTTTTACACAAAGGGACTATAAAATGTTTCCTCCTTCAGTAAACTGGGAAAATATAGATTGGTCAACTAGAAGGCCTCAGATGGATTTTCCAGTTCAGTCTGTGATTTGTTCTTTGGAGGAAGAAAATACAGTAAAGCCCGGAAAGATAGTAGTTCATGGATATGCAGTATCAGGAGGTGGTCGAGGGATTGAGCGAGTGGATGTGTCTTTTGATGGAGGCAATACATGGGAGGAAGCAATCAGATACCAGAAGAGTACTGCAGTCCCATATGTTGCTGATGATACAAGTACTGGTGACAAATGGGCATGGGTGCTGTTTAAGGCAGAAGCAGATGTCTCTCATACTACTGAGATCATCACCAAAGCAGTTGATATAGCAGGAAATGTCCAACCTGAAAATGTGGCTGTCATCTGGAACCTGAGAGGAATACTAAACACATCTTGGCACAGGGTTCGTGTTGAATGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 ko01100 ko01120 map00920 map01100 map01120
Pfam Domains
Protein Families
Mo-co_dimer Oxidored_molyb

Protein Analysis

392

Amino Acids

43.21

Weight (kDa)

6.12

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_molyb PF00174 53 - 235 3.2e-58 Oxidoreductase molybdopterin binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 287
AciI CCGC 3 cut(s) 210, 245, 372
AclWI GGATC 2 cut(s) 428, 609
AcsI RAATTY 2 cut(s) 67, 544
AcuI CTGAAG 2 cut(s) 54, 723
AdeI CACNNNGTG 1 cut(s) 274
AfaI GTAC 2 cut(s) 961, 994
AfiI CCNNNNNNNGG 3 cut(s) 338, 378, 452
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 5 cut(s) 85, 410, 536, 686, 1166
AjnI CCWGG 3 cut(s) 72, 631, 696
AjuI GAANNNNNNNTTGG 2 cut(s) 361, 393
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 3 cut(s) 62, 581, 1045
AlwI GGATC 2 cut(s) 428, 609
AoxI GGCC 1 cut(s) 776
ApoI RAATTY 2 cut(s) 67, 544
AseI ATTAAT 1 cut(s) 530
AspS9I GGNCC 2 cut(s) 161, 506
AsuC2I CCSGG 1 cut(s) 843
AsuHPI GGTGA 4 cut(s) 346, 435, 1010, 1054
AvaII GGWCC 2 cut(s) 161, 506
BanII GRGCYC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 649
BbvCI CCTCAGC 1 cut(s) 555
BccI CCATC 6 cut(s) 28, 57, 342, 680, 778, 911
BcgI CGANNNNNNTGC 2 cut(s) 1139, 1173
BciT130I CCWGG 3 cut(s) 74, 633, 698
BcnI CCSGG 1 cut(s) 843
BcoDI GTCTC 3 cut(s) 62, 581, 1045
BfaI CTAG 1 cut(s) 771
BfmI CTRYAG 1 cut(s) 963
BfrI CTTAAG 1 cut(s) 10
BfuAI ACCTGC 1 cut(s) 287
BmcAI AGTACT 2 cut(s) 961, 994
Bme1390I CCNGG 4 cut(s) 74, 633, 698, 843
Bme18I GGWCC 2 cut(s) 161, 506
BmgT120I GGNCC 2 cut(s) 161, 506
BmiI GGNNCC 4 cut(s) 78, 370, 507, 1121
BmrFI CCNGG 4 cut(s) 74, 633, 698, 843
BmrI ACTGGG 2 cut(s) 125, 757
BmsI GCATC 1 cut(s) 541
BmuI ACTGGG 2 cut(s) 125, 757
Bpu10I CCTNAGC 1 cut(s) 555
BpuMI CCSGG 1 cut(s) 843
Bsa29I ATCGAT 1 cut(s) 675
BsaJI CCNNGG 4 cut(s) 72, 157, 447, 697
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 378, 452
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 4 cut(s) 131, 752, 794, 1000
Bse3DI GCAATG 3 cut(s) 284, 296, 321
BseBI CCWGG 3 cut(s) 74, 633, 698
BseCI ATCGAT 1 cut(s) 675
BseDI CCNNGG 4 cut(s) 72, 157, 447, 697
BseGI GGATG 5 cut(s) 49, 353, 358, 556, 910
BseLI CCNNNNNNNGG 3 cut(s) 338, 378, 452
BseMI GCAATG 3 cut(s) 284, 296, 321
BseMII CTCAG 4 cut(s) 546, 794, 1044, 1115
BseNI ACTGG 4 cut(s) 131, 752, 794, 1000
BsgI GTGCAG 1 cut(s) 315
BshFI GGCC 1 cut(s) 778
BshVI ATCGAT 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 649
BsiSI CCGG 2 cut(s) 332, 843
BslFI GGGAC 3 cut(s) 519, 731, 953
BslI CCNNNNNNNGG 3 cut(s) 338, 378, 452
BsmAI GTCTC 3 cut(s) 62, 581, 1045
BsmFI GGGAC 3 cut(s) 519, 731, 953
BsmI GAATGC 1 cut(s) 698
BsnI GGCC 1 cut(s) 778
Bsp1286I GDGCHC 2 cut(s) 19, 649
Bsp143I GATC 4 cut(s) 420, 601, 650, 1056
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 3 cut(s) 210, 245, 372
BspANI GGCC 1 cut(s) 778
BspCNI CTCAG 4 cut(s) 547, 793, 1045, 1116
BspDI ATCGAT 1 cut(s) 675
BspLI GGNNCC 4 cut(s) 78, 370, 507, 1121
BspMAI CTGCAG 1 cut(s) 967
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 2 cut(s) 428, 609
BspTI CTTAAG 1 cut(s) 10
BsrDI GCAATG 3 cut(s) 284, 296, 321
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 4 cut(s) 131, 752, 794, 1000
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 4 cut(s) 72, 157, 447, 697
BssMI GATC 4 cut(s) 420, 601, 650, 1056
BssT1I CCWWGG 2 cut(s) 157, 447
Bst2UI CCWGG 3 cut(s) 74, 633, 698
Bst4CI ACNGT 4 cut(s) 237, 274, 280, 835
Bst6I CTCTTC 1 cut(s) 950
BstAFI CTTAAG 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 5 cut(s) 555, 665, 780, 1053, 1124
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 5 cut(s) 49, 353, 358, 556, 910
BstKTI GATC 4 cut(s) 423, 604, 653, 1059
BstMAI GTCTC 3 cut(s) 62, 581, 1045
BstMBI GATC 4 cut(s) 420, 601, 650, 1056
BstMWI GCNNNNNNNGC 2 cut(s) 113, 395
BstNI CCWGG 3 cut(s) 74, 633, 698
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 4 cut(s) 72, 631, 696, 841
BstSFI CTRYAG 1 cut(s) 963
BstX2I RGATCY 1 cut(s) 420
BstXI CCANNNNNNTGG 1 cut(s) 547
BstYI RGATCY 1 cut(s) 420
Bsu15I ATCGAT 1 cut(s) 675
BsuRI GGCC 1 cut(s) 778
BsuTUI ATCGAT 1 cut(s) 675
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 5 cut(s) 49, 353, 358, 556, 910
BtsIMutI CAGTG 4 cut(s) 183, 270, 285, 444
BveI ACCTGC 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 161, 506
ClaI ATCGAT 1 cut(s) 675
Csp6I GTAC 2 cut(s) 960, 993
CviAII CATG 7 cut(s) 61, 158, 461, 605, 860, 930, 1011
CviQI GTAC 2 cut(s) 960, 993
DdeI CTNAG 5 cut(s) 555, 665, 780, 1053, 1124
DpnI GATC 4 cut(s) 422, 603, 652, 1058
DpnII GATC 4 cut(s) 420, 601, 650, 1056
DraIII CACNNNGTG 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 950
EarI CTCTTC 1 cut(s) 950
EciI GGCGGA 1 cut(s) 260
Eco130I CCWWGG 2 cut(s) 157, 447
Eco147I AGGCCT 1 cut(s) 778
Eco24I GRGCYC 1 cut(s) 19
Eco32I GATATC 1 cut(s) 611
Eco47I GGWCC 2 cut(s) 161, 506
Eco57I CTGAAG 2 cut(s) 54, 723
EcoO109I RGGNCCY 1 cut(s) 506
EcoRII CCWGG 3 cut(s) 72, 631, 696
EcoRV GATATC 1 cut(s) 611
EcoT14I CCWWGG 2 cut(s) 157, 447
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 2 cut(s) 157, 447
FaeI CATG 7 cut(s) 64, 161, 464, 608, 863, 933, 1014
FaqI GGGAC 3 cut(s) 519, 731, 953
FatI CATG 7 cut(s) 60, 157, 460, 604, 859, 929, 1010
FauNDI CATATG 2 cut(s) 571, 973
FokI GGATG 5 cut(s) 36, 360, 365, 563, 917
FriOI GRGCYC 1 cut(s) 19
FspBI CTAG 1 cut(s) 771
HaeIII GGCC 1 cut(s) 778
HapII CCGG 2 cut(s) 332, 843
Hin1II CATG 7 cut(s) 64, 161, 464, 608, 863, 933, 1014
HincII GTYRAC 2 cut(s) 432, 768
HindII GTYRAC 2 cut(s) 432, 768
HinfI GANTC 1 cut(s) 589
HpaI GTTAAC 1 cut(s) 432
HpaII CCGG 2 cut(s) 332, 843
HphI GGTGA 4 cut(s) 346, 435, 1010, 1054
Hpy166II GTNNAC 3 cut(s) 432, 745, 768
Hpy188I TCNGA 4 cut(s) 34, 264, 783, 947
Hpy188III TCNNGA 5 cut(s) 230, 253, 407, 876, 1117
Hpy8I GTNNAC 3 cut(s) 432, 745, 768
HpyAV CCTTC 2 cut(s) 747, 768
HpyCH4III ACNGT 4 cut(s) 237, 274, 280, 835
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 9 cut(s) 89, 289, 296, 314, 362, 489, 569, 869, 965
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 395
HpyF3I CTNAG 5 cut(s) 555, 665, 780, 1053, 1124
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 7 cut(s) 64, 161, 464, 608, 863, 933, 1014
KspAI GTTAAC 1 cut(s) 432
Kzo9I GATC 4 cut(s) 420, 601, 650, 1056
LmnI GCTCC 1 cut(s) 76
LweI GCATC 1 cut(s) 541
MaeI CTAG 1 cut(s) 771
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 5 cut(s) 124, 274, 280, 441, 998
MalI GATC 4 cut(s) 422, 603, 652, 1058
MboI GATC 4 cut(s) 420, 601, 650, 1056
MboII GAAGA 4 cut(s) 47, 510, 836, 967
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 19, 649
MluCI AATT 8 cut(s) 25, 67, 165, 363, 531, 544, 624, 639
MlyI GAGTC 1 cut(s) 583
MmeI TCCRAC 2 cut(s) 325, 1117
MseI TTAA 4 cut(s) 11, 431, 530, 1023
MslI CAYNNNNRTG 2 cut(s) 289, 864
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 2 cut(s) 332, 843
MspR9I CCNGG 4 cut(s) 74, 633, 698, 843
MunI CAATTG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 698
MvaI CCWGG 3 cut(s) 74, 633, 698
MwoI GCNNNNNNNGC 2 cut(s) 113, 395
NciI CCSGG 1 cut(s) 843
NcoI CCATGG 1 cut(s) 157
NdeI CATATG 2 cut(s) 571, 973
NdeII GATC 4 cut(s) 420, 601, 650, 1056
NlaIII CATG 7 cut(s) 64, 161, 464, 608, 863, 933, 1014
NlaIV GGNNCC 4 cut(s) 78, 370, 507, 1121
NmuCI GTSAC 5 cut(s) 124, 274, 280, 441, 998
NspI RCATGY 1 cut(s) 464
PceI AGGCCT 1 cut(s) 778
PctI GAATGC 1 cut(s) 698
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 506
PshBI ATTAAT 1 cut(s) 530
Psp5II RGGWCCY 1 cut(s) 506
Psp6I CCWGG 3 cut(s) 72, 631, 696
PspGI CCWGG 3 cut(s) 72, 631, 696
PspN4I GGNNCC 4 cut(s) 78, 370, 507, 1121
PspPI GGNCC 2 cut(s) 161, 506
PspPPI RGGWCCY 1 cut(s) 506
PstI CTGCAG 1 cut(s) 967
PsuI RGATCY 1 cut(s) 420
RsaI GTAC 2 cut(s) 961, 994
RsaNI GTAC 2 cut(s) 960, 993
RseI CAYNNNNRTG 2 cut(s) 289, 864
SaqAI TTAA 4 cut(s) 11, 431, 530, 1023
Sau3AI GATC 4 cut(s) 420, 601, 650, 1056
Sau96I GGNCC 2 cut(s) 161, 506
ScaI AGTACT 2 cut(s) 961, 994
SchI GAGTC 1 cut(s) 583
ScrFI CCNGG 4 cut(s) 74, 633, 698, 843
SduI GDGCHC 2 cut(s) 19, 649
SfaNI GCATC 1 cut(s) 541
SfcI CTRYAG 1 cut(s) 963
SinI GGWCC 2 cut(s) 161, 506
SmiMI CAYNNNNRTG 2 cut(s) 289, 864
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 8 cut(s) 25, 67, 165, 363, 531, 544, 624, 639
SseBI AGGCCT 1 cut(s) 778
SsiI CCGC 3 cut(s) 210, 245, 372
SspMI CTAG 1 cut(s) 771
StuI AGGCCT 1 cut(s) 778
StyD4I CCNGG 4 cut(s) 72, 631, 696, 841
StyI CCWWGG 2 cut(s) 157, 447
TaaI ACNGT 4 cut(s) 237, 274, 280, 835
TaiI ACGT 1 cut(s) 103
TaqI TCGA 4 cut(s) 196, 649, 675, 886
TasI AATT 8 cut(s) 25, 67, 165, 363, 531, 544, 624, 639
TatI WGTACW 2 cut(s) 959, 992
Tru1I TTAA 4 cut(s) 11, 431, 530, 1023
Tru9I TTAA 4 cut(s) 11, 431, 530, 1023
TscAI CASTG 4 cut(s) 190, 277, 285, 444
TseFI GTSAC 5 cut(s) 124, 274, 280, 441, 998
Tsp45I GTSAC 5 cut(s) 124, 274, 280, 441, 998
TspDTI ATGAA 3 cut(s) 588, 593, 848
TspRI CASTG 4 cut(s) 190, 277, 285, 444
Vha464I CTTAAG 1 cut(s) 10
VpaK11BI GGWCC 2 cut(s) 161, 506
VspI ATTAAT 1 cut(s) 530
XapI RAATTY 2 cut(s) 67, 544
XceI RCATGY 1 cut(s) 464
XspI CTAG 1 cut(s) 771
ZrmI AGTACT 2 cut(s) 961, 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.