Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Reverse (-)

39136402 .. 39140241

Gene Structure 3840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53351.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAACGGAGAGACCCTAAACAGGGATCATGGGTATCCATTGTGTGTGGTTGTGCCTGGTGTTATTGGTGCCCGTTCTGTCAAATGGCTTGATTCGATTAATGTCATTGCAGAGGAATGTCAGGGCTTCTTTAAGCAAAAAGACTACAAAATGTTTCCACCTTCAGTAAACTGGGATAACATTAATTGGTCCACAAGGAGACCACAAATGGATTTTCCTGTCCGGTGTGTAATTTGCTCTTTAGAGGATGTGAATGCATTAAAGCATGGAAAGTACCTTGTTGGACTCAACAAGGACTTGGAGACGAAGGATCCAACTGGTGCAAAGGTGACTTGGACTCCGGTTCAAGACTTCAAGTTCATTAAAGCTGTGGAAGAGACTGTTGCCAGATTGGAAGGGTTGAAGCAGAGCTCGGAGAAAATAATACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

144

Amino Acids

16.28

Weight (kDa)

8.34

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	1 - 43	1e-14	Oxidoreductase molybdopterin binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AclWI	GGATC	3 cut(s)	33, 305, 318
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	21, 22
AgsI	TTSAA	3 cut(s)	347, 355, 403
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	2 cut(s)	368, 411
AluI	AGCT	2 cut(s)	368, 411
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	4 cut(s)	5, 193, 296, 371
AlwI	GGATC	3 cut(s)	33, 305, 318
AseI	ATTAAT	2 cut(s)	99, 183
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	189
BaeGI	GKGCMC	1 cut(s)	73
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	45
BcoDI	GTCTC	4 cut(s)	5, 193, 296, 371
BfuI	GTATCC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	2 cut(s)	70, 312
BmrFI	CCNGG	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	181
BsaI	GGTCTC	2 cut(s)	5, 193
BsaWI	WCCGGW	2 cut(s)	222, 340
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 22
Bse1I	ACTGG	2 cut(s)	176, 322
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	21, 22
BseMI	GCAATG	1 cut(s)	105
BseNI	ACTGG	2 cut(s)	176, 322
BseSI	GKGCMC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	223, 341
BslI	CCNNNNNNNGG	2 cut(s)	21, 22
BsmAI	GTCTC	4 cut(s)	5, 193, 296, 371
BsmBI	CGTCTC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	259
Bso31I	GGTCTC	2 cut(s)	5, 193
Bsp1286I	GDGCHC	2 cut(s)	73, 413
Bsp143I	GATC	2 cut(s)	25, 310
BspLI	GGNNCC	2 cut(s)	70, 312
BspPI	GGATC	3 cut(s)	33, 305, 318
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	2 cut(s)	5, 193
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	2 cut(s)	176, 322
BssMI	GATC	2 cut(s)	25, 310
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	2 cut(s)	28, 313
BstMAI	GTCTC	4 cut(s)	5, 193, 296, 371
BstMBI	GATC	2 cut(s)	25, 310
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	2 cut(s)	29, 266
CviJI	RGCY	4 cut(s)	88, 126, 368, 411
CviKI_1	RGCY	4 cut(s)	88, 126, 368, 411
CviQI	GTAC	1 cut(s)	274
DpnI	GATC	2 cut(s)	27, 312
DpnII	GATC	2 cut(s)	25, 310
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	413
Eco31I	GGTCTC	2 cut(s)	5, 193
Eco47I	GGWCC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	413
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	2 cut(s)	32, 269
FaiI	YATR	2 cut(s)	30, 267
FatI	CATG	2 cut(s)	28, 265
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	413
HapII	CCGG	2 cut(s)	223, 341
Hin1II	CATG	2 cut(s)	32, 269
HinfI	GANTC	3 cut(s)	92, 285, 337
HpaII	CCGG	2 cut(s)	223, 341
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	2 cut(s)	169, 192
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	2 cut(s)	169, 192
HpyAV	CCTTC	3 cut(s)	171, 301, 389
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	3 cut(s)	110, 257, 323
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	2 cut(s)	32, 269
Kzo9I	GATC	2 cut(s)	25, 310
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	2 cut(s)	27, 312
MboI	GATC	2 cut(s)	25, 310
MboII	GAAGA	1 cut(s)	386
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	73, 413
MluCI	AATT	2 cut(s)	184, 231
MlyI	GAGTC	2 cut(s)	279, 331
MmeI	TCCRAC	2 cut(s)	262, 338
MnlI	CCTC	2 cut(s)	106, 238
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	6 cut(s)	99, 132, 183, 260, 363, 430
MspI	CCGG	2 cut(s)	223, 341
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	25, 310
NlaIII	CATG	2 cut(s)	32, 269
NlaIV	GGNNCC	2 cut(s)	70, 312
NmuCI	GTSAC	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	259
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	92
PleI	GAGTC	2 cut(s)	279, 331
PpsI	GAGTC	2 cut(s)	279, 331
PshBI	ATTAAT	2 cut(s)	99, 183
Psp124BI	GAGCTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	70, 312
PspPI	GGNCC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SacI	GAGCTC	1 cut(s)	413
SaqAI	TTAA	6 cut(s)	99, 132, 183, 260, 363, 430
Sau3AI	GATC	2 cut(s)	25, 310
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	2 cut(s)	279, 331
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	73, 413
SetI	ASST	6 cut(s)	163, 279, 330, 370, 413, 430
SinI	GGWCC	1 cut(s)	189
Sse9I	AATT	2 cut(s)	184, 231
SstI	GAGCTC	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	184, 231
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	6 cut(s)	99, 132, 183, 260, 363, 430
Tru9I	TTAA	6 cut(s)	99, 132, 183, 260, 363, 430
TseFI	GTSAC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	17, 349
TspGWI	ACGGA	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	189
VspI	ATTAAT	2 cut(s)	99, 183
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.