Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Reverse (-)

70798075 .. 70798774

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0585200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGACCGAAACCAAGAACAAAACTGCCGGAACTGGATTGACCTTCCACACGACCTGACCGCTTCGATATTATCACGGCTGGGAGTGATCGAGATTCTGGAGACAGCTCAGAAGAATGCACGGAAGATGGCAGCGATGTGCCGCCACGCCGTTGATCTTGGCCGTGGCAATGTCGTCGATATAAGTCTCCAAAACTTCGGCACCGATCTCCTCCTTGTGGATATCACTAACAGTTGCAAGGGAATCAGACGCCTCAGTCTGGTGTTACCTAATATAACACATGATGGACTCATTAGAGTGGCTTCCAAACTTCCGTTGTTGGAGGACCTTGAAATTTCTTACAGTGCATACACAACTGCAGGTCTTGAAGCCATCGGCAGTTGCTGCCCTCTTTTGAAGTCACTGAAACTGAACAAGCGCCACGATATCCGATATGACTGGGACGGCCTTTTACTTGCTGGACTTCACCACCATTATCAGGTTTTCGGACGTAAGAGTAGTGGCGGGGTAATACACGATGATGGCGTTGCACTTGCTATAGCGGGAACAATGCATGGTTTACAACAGCTCCAGATATCTGGAAATAGGGTGACTAACAAGGGCTTAAGCCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

205

Amino Acids

22.52

Weight (kDa)

8.3

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	4 cut(s)	60, 142, 504, 542
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	250
AfiI	CCNNNNNNNGG	3 cut(s)	217, 259, 478
AflII	CTTAAG	1 cut(s)	604
AgsI	TTSAA	3 cut(s)	332, 368, 397
AluBI	AGCT	2 cut(s)	107, 568
AluI	AGCT	2 cut(s)	107, 568
Alw26I	GTCTC	2 cut(s)	95, 191
AlwNI	CAGNNNCTG	1 cut(s)	384
AoxI	GGCC	2 cut(s)	160, 445
ApeKI	GCWGC	2 cut(s)	131, 384
ApoI	RAATTY	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	2 cut(s)	4, 325
AsuHPI	GGTGA	2 cut(s)	458, 601
AvaII	GGWCC	2 cut(s)	4, 325
BanI	GGYRCC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	143, 371
BccI	CCATC	4 cut(s)	121, 278, 380, 515
BceAI	ACGGC	4 cut(s)	92, 134, 147, 460
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BcoDI	GTCTC	2 cut(s)	95, 191
BfmI	CTRYAG	2 cut(s)	357, 537
BfoI	RGCGCY	1 cut(s)	421
BfrI	CTTAAG	1 cut(s)	604
BfuAI	ACCTGC	1 cut(s)	350
BisI	GCNGC	3 cut(s)	132, 142, 385
BlsI	GCNGC	3 cut(s)	133, 143, 386
Bme18I	GGWCC	2 cut(s)	4, 325
BmgT120I	GGNCC	2 cut(s)	4, 325
BmiI	GGNNCC	1 cut(s)	202
BmrI	ACTGGG	1 cut(s)	448
BmuI	ACTGGG	1 cut(s)	448
BpmI	CTGGAG	2 cut(s)	119, 554
BsaHI	GRCGYC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 259, 478
Bse1I	ACTGG	2 cut(s)	38, 443
Bse3DI	GCAATG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	217, 259, 478
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	122, 268
BseNI	ACTGG	2 cut(s)	38, 443
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	143, 371
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	2 cut(s)	162, 447
BshNI	GGYRCC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	3 cut(s)	217, 259, 478
BsmAI	GTCTC	2 cut(s)	95, 191
BsmFI	GGGAC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	162, 447
Bsp143I	GATC	3 cut(s)	87, 154, 205
BspACI	CCGC	4 cut(s)	60, 142, 504, 542
BspANI	GGCC	2 cut(s)	162, 447
BspCNI	CTCAG	2 cut(s)	121, 267
BspLI	GGNNCC	1 cut(s)	202
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	604
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	38, 443
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	3 cut(s)	87, 154, 205
BssNI	GRCGYC	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	233, 344
BstACI	GRCGYC	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	604
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	108, 254
BstDSI	CCRYGG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	3 cut(s)	90, 157, 208
BstMAI	GTCTC	2 cut(s)	95, 191
BstMBI	GATC	3 cut(s)	87, 154, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstSFI	CTRYAG	2 cut(s)	357, 537
BstV1I	GCAGC	2 cut(s)	143, 371
BstXI	CCANNNNNNTGG	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	162, 447
BtgI	CCRYGG	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	149
BtsIMutI	CAGTG	2 cut(s)	349, 401
BveI	ACCTGC	1 cut(s)	350
CaiI	CAGNNNCTG	1 cut(s)	384
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	2 cut(s)	4, 325
CseI	GACGC	1 cut(s)	258
CviAII	CATG	2 cut(s)	281, 554
CviJI	RGCY	9 cut(s)	79, 107, 162, 302, 371, 447, 568, 603, 609
CviKI_1	RGCY	9 cut(s)	79, 107, 162, 302, 371, 447, 568, 603, 609
DdeI	CTNAG	2 cut(s)	108, 254
DpnI	GATC	3 cut(s)	89, 156, 207
DpnII	GATC	3 cut(s)	87, 154, 205
DrdI	GACNNNNNNGTC	1 cut(s)	255
DseDI	GACNNNNNNGTC	1 cut(s)	255
EaeI	YGGCCR	1 cut(s)	160
Eco32I	GATATC	3 cut(s)	223, 427, 576
Eco47I	GGWCC	2 cut(s)	4, 325
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRV	GATATC	3 cut(s)	223, 427, 576
EcoT22I	ATGCAT	1 cut(s)	555
FaeI	CATG	2 cut(s)	284, 557
FaiI	YATR	7 cut(s)	182, 275, 282, 349, 435, 539, 555
FalI	AAGNNNNNCTT	1 cut(s)	598
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	2 cut(s)	280, 553
FauI	CCCGC	2 cut(s)	497, 535
Fnu4HI	GCNGC	3 cut(s)	132, 142, 385
Fsp4HI	GCNGC	3 cut(s)	132, 142, 385
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	3 cut(s)	132, 142, 385
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	2 cut(s)	119, 554
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	162, 447
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	420
Hin1I	GRCGYC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	284, 557
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	94, 243, 288
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	2 cut(s)	458, 601
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	4 cut(s)	111, 248, 431, 488
Hpy188III	TCNNGA	6 cut(s)	91, 98, 365, 571, 579, 615
Hpy8I	GTNNAC	1 cut(s)	560
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	233, 344
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	6 cut(s)	119, 237, 347, 359, 530, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	2 cut(s)	108, 254
HpySE526I	ACGT	1 cut(s)	490
Hsp92I	GRCGYC	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	284, 557
HspAI	GCGC	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	87, 154, 205
LmnI	GCTCC	1 cut(s)	573
Lsp1109I	GCAGC	2 cut(s)	143, 371
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	3 cut(s)	264, 399, 589
MalI	GATC	3 cut(s)	89, 156, 207
MboI	GATC	3 cut(s)	87, 154, 205
MboII	GAAGA	2 cut(s)	124, 136
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	4 cut(s)	221, 263, 316, 399
Mph1103I	ATGCAT	1 cut(s)	555
MseI	TTAA	1 cut(s)	605
MslI	CAYNNNNRTG	2 cut(s)	296, 519
MspCI	CTTAAG	1 cut(s)	604
MspI	CCGG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	384
NdeII	GATC	3 cut(s)	87, 154, 205
NlaIII	CATG	2 cut(s)	284, 557
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	399, 589
NsiI	ATGCAT	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	94, 243
PkrI	GCNGC	3 cut(s)	133, 143, 386
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	4, 325
PspPPI	RGGWCCY	1 cut(s)	325
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	384
RseI	CAYNNNNRTG	2 cut(s)	296, 519
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	3 cut(s)	132, 142, 385
Sau3AI	GATC	3 cut(s)	87, 154, 205
Sau96I	GGNCC	2 cut(s)	4, 325
SchI	GAGTC	1 cut(s)	282
SetI	ASST	9 cut(s)	45, 57, 109, 271, 330, 364, 483, 493, 570
SfcI	CTRYAG	2 cut(s)	357, 537
SinI	GGWCC	2 cut(s)	4, 325
SmiMI	CAYNNNNRTG	2 cut(s)	296, 519
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	4 cut(s)	60, 142, 504, 542
TaaI	ACNGT	2 cut(s)	233, 344
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	3 cut(s)	65, 90, 177
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	333
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	94, 243
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	2 cut(s)	349, 408
TseFI	GTSAC	2 cut(s)	399, 589
TseI	GCWGC	2 cut(s)	131, 384
Tsp45I	GTSAC	2 cut(s)	399, 589
TspGWI	ACGGA	2 cut(s)	136, 303
TspRI	CASTG	2 cut(s)	349, 408
Vha464I	CTTAAG	1 cut(s)	604
VpaK11BI	GGWCC	2 cut(s)	4, 325
XapI	RAATTY	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.