Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8444955.1

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1615

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8444955.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

gccacaagcccagaagcagacgttttacttgcttatgagatgaatggagaaaccctaaacagggatcatgggtatccattgcgtgtagttgtacctggtgttataggtgcccgttctgttaaatggcttgattctattaatgtcattgcagaggaatgtcagggcttctttatgcaaaaggactacaaaatgtttccaccttcagtaaactgggataacattaattggtccaccaggaggccacaaatggattttcctgtccagtgtgtaatttgttctttagaggatgtgaatgcaataaagcctggaaaggtaaaagtcagtggttatgcagcatcaggaggtggtcgtggcattgagagagttgatgtgtctgttgatggtggcaatacctgggtagaagcatctagacatcagaaaactggcatcccatatattgcagaggccacatgcagcgataaatgggcatgggtactttttgaggccatggttgatgtccaacagagcactcaaattgttgcaaaagcagtatgtttcgttgattctgataacatattatttacaatgatacaatttcctagaattaggaagtttacatgcaccaattcatatctaatcctcgacatcaattttgtgaataggatccttaccatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

218

Amino Acids

24.41

Weight (kDa)

5.45

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AclWI	GGATC	3 cut(s)	72, 637, 650
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	2 cut(s)	93, 474
AfiI	CCNNNNNNNGG	3 cut(s)	60, 61, 237
AjnI	CCWGG	4 cut(s)	94, 233, 304, 392
Alw21I	GWGCWC	1 cut(s)	509
AlwI	GGATC	3 cut(s)	72, 637, 650
AoxI	GGCC	3 cut(s)	239, 444, 483
ApeKI	GCWGC	2 cut(s)	332, 453
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
AseI	ATTAAT	2 cut(s)	138, 222
AspS9I	GGNCC	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	642
BanI	GGYRCC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	344, 465
BccI	CCATC	1 cut(s)	374
BciT130I	CCWGG	4 cut(s)	96, 235, 306, 394
BciVI	GTATCC	1 cut(s)	84
BfaI	CTAG	2 cut(s)	408, 579
BfuI	GTATCC	1 cut(s)	84
BisI	GCNGC	2 cut(s)	333, 454
BlsI	GCNGC	2 cut(s)	334, 455
Bme1390I	CCNGG	4 cut(s)	96, 235, 306, 394
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	109, 644
BmrFI	CCNGG	4 cut(s)	96, 235, 306, 394
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	344, 413, 435
BmuI	ACTGGG	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	393, 486
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 61, 237
Bse1I	ACTGG	3 cut(s)	215, 262, 427
Bse3DI	GCAATG	2 cut(s)	77, 144
BseBI	CCWGG	4 cut(s)	96, 235, 306, 394
BseDI	CCNNGG	2 cut(s)	393, 486
BseGI	GGATG	2 cut(s)	292, 426
BseLI	CCNNNNNNNGG	3 cut(s)	60, 61, 237
BseMI	GCAATG	2 cut(s)	77, 144
BseNI	ACTGG	3 cut(s)	215, 262, 427
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	344, 465
BshFI	GGCC	3 cut(s)	241, 446, 485
BshNI	GGYRCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	509
BslI	CCNNNNNNNGG	3 cut(s)	60, 61, 237
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	241, 446, 485
Bsp1286I	GDGCHC	2 cut(s)	112, 509
Bsp143I	GATC	2 cut(s)	64, 642
Bsp19I	CCATGG	1 cut(s)	486
BspANI	GGCC	3 cut(s)	241, 446, 485
BspLI	GGNNCC	2 cut(s)	109, 644
BspPI	GGATC	3 cut(s)	72, 637, 650
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	77, 144
BsrI	ACTGG	3 cut(s)	215, 262, 427
BssECI	CCNNGG	2 cut(s)	393, 486
BssMI	GATC	2 cut(s)	64, 642
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	4 cut(s)	96, 235, 306, 394
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	2 cut(s)	292, 426
BstKTI	GATC	2 cut(s)	67, 645
BstMBI	GATC	2 cut(s)	64, 642
BstNI	CCWGG	4 cut(s)	96, 235, 306, 394
BstNSI	RCATGY	2 cut(s)	453, 600
BstSCI	CCNGG	4 cut(s)	94, 233, 304, 392
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	344, 465
BstX2I	RGATCY	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	241, 446, 485
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	292, 426
BtsIMutI	CAGTG	2 cut(s)	269, 328
Cfr13I	GGNCC	1 cut(s)	228
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	92, 473
CviAII	CATG	5 cut(s)	68, 450, 468, 487, 597
CviJI	RGCY	7 cut(s)	9, 127, 165, 241, 304, 446, 485
CviKI_1	RGCY	7 cut(s)	9, 127, 165, 241, 304, 446, 485
CviQI	GTAC	2 cut(s)	92, 473
DpnI	GATC	2 cut(s)	66, 644
DpnII	GATC	2 cut(s)	64, 642
Eco130I	CCWWGG	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	186
EcoRII	CCWGG	4 cut(s)	94, 233, 304, 392
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	5 cut(s)	71, 453, 471, 490, 600
FatI	CATG	5 cut(s)	67, 449, 467, 486, 596
Fnu4HI	GCNGC	2 cut(s)	333, 454
FokI	GGATG	2 cut(s)	299, 413
Fsp4HI	GCNGC	2 cut(s)	333, 454
FspBI	CTAG	2 cut(s)	408, 579
GluI	GCNGC	2 cut(s)	333, 454
HaeIII	GGCC	3 cut(s)	241, 446, 485
Hin1II	CATG	5 cut(s)	71, 453, 471, 490, 600
HinfI	GANTC	2 cut(s)	131, 542
Hpy166II	GTNNAC	3 cut(s)	208, 231, 594
Hpy188I	TCNGA	2 cut(s)	417, 547
Hpy188III	TCNNGA	2 cut(s)	339, 408
Hpy8I	GTNNAC	3 cut(s)	208, 231, 594
HpyAV	CCTTC	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	8 cut(s)	149, 175, 296, 332, 440, 453, 521, 600
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	71, 453, 471, 490, 600
Kzo9I	GATC	2 cut(s)	64, 642
Lsp1109I	GCAGC	2 cut(s)	344, 465
LweI	GCATC	3 cut(s)	344, 413, 435
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	2 cut(s)	408, 579
MaeII	ACGT	1 cut(s)	21
MalI	GATC	2 cut(s)	66, 644
MboI	GATC	2 cut(s)	64, 642
MflI	RGATCY	1 cut(s)	642
MhlI	GDGCHC	2 cut(s)	112, 509
MluCI	AATT	7 cut(s)	223, 270, 513, 572, 582, 604, 628
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	7 cut(s)	145, 231, 277, 335, 436, 475, 629
MseI	TTAA	3 cut(s)	120, 138, 222
MspR9I	CCNGG	4 cut(s)	96, 235, 306, 394
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	4 cut(s)	96, 235, 306, 394
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	2 cut(s)	64, 642
NlaIII	CATG	5 cut(s)	71, 453, 471, 490, 600
NlaIV	GGNNCC	2 cut(s)	109, 644
NspI	RCATGY	2 cut(s)	453, 600
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	131, 542
PkrI	GCNGC	2 cut(s)	334, 455
PshBI	ATTAAT	2 cut(s)	138, 222
Psp6I	CCWGG	4 cut(s)	94, 233, 304, 392
PspGI	CCWGG	4 cut(s)	94, 233, 304, 392
PspN4I	GGNNCC	2 cut(s)	109, 644
PspPI	GGNCC	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	642
RsaI	GTAC	2 cut(s)	93, 474
RsaNI	GTAC	2 cut(s)	92, 473
SaqAI	TTAA	3 cut(s)	120, 138, 222
SatI	GCNGC	2 cut(s)	333, 454
Sau3AI	GATC	2 cut(s)	64, 642
Sau96I	GGNCC	1 cut(s)	228
ScrFI	CCNGG	4 cut(s)	96, 235, 306, 394
SduI	GDGCHC	2 cut(s)	112, 509
SetI	ASST	7 cut(s)	24, 97, 109, 202, 315, 346, 395
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	3 cut(s)	344, 413, 435
SinI	GGWCC	1 cut(s)	228
Sse9I	AATT	7 cut(s)	223, 270, 513, 572, 582, 604, 628
SspMI	CTAG	2 cut(s)	408, 579
StyD4I	CCNGG	4 cut(s)	94, 233, 304, 392
StyI	CCWWGG	1 cut(s)	486
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	621
TasI	AATT	7 cut(s)	223, 270, 513, 572, 582, 604, 628
TfiI	GAWTC	2 cut(s)	131, 542
Tru1I	TTAA	3 cut(s)	120, 138, 222
Tru9I	TTAA	3 cut(s)	120, 138, 222
TscAI	CASTG	2 cut(s)	269, 328
TseI	GCWGC	2 cut(s)	332, 453
TspDTI	ATGAA	2 cut(s)	56, 597
TspRI	CASTG	2 cut(s)	269, 328
VpaK11BI	GGWCC	1 cut(s)	228
VspI	ATTAAT	2 cut(s)	138, 222
XbaI	TCTAGA	1 cut(s)	407
XceI	RCATGY	2 cut(s)	453, 600
XspI	CTAG	2 cut(s)	408, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.