Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Forward (+)

618880 .. 621600

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00960.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCCGGGCGTTCGAGGGCCGTCGGATTACTCGCTGGAGCCATCTCGACATCCCAGCCTCCAAATCAATTCCAAGGAACCTTTCAATGCGGAGCCGCCGCGTTCCGCTCTGGCTTCGTCGTACGTCACTCCCGTCGACTTCTTCTACAAGCGAAATCACGGTCCTATTCCCGTCATCGACGACATCCACAGTTACTCAGTTTCCTTCACCGGATTAATAGAAAATCCCAAACAGCTCTTTATGAAAGATATCAGGGCGCTTCCCAAGTATCTTGTGACTGCCACGTTACAGTGTGCAGGTAATAGAAGGACAGCTATGAGCAAAACCCGGACCGTCAAGGGAGTAGGTTGGGATGTTTCTGCTATAGGAAATGCTGTCTGGGGTGGTGCAAAACTAGCTGATGTTCTTGAACTTGTCGGAATACCCAAGTTGACAGGTGCCACAAAATCAGGTGGAAAACATGTCGAATTTGTAAGCGTTGATAAGTGTAAGGAGGAAAACGGAGGCCCCTACAAGGCTTCAATCCCTCTCATTCAAGCCACAAACCCAGAAGCAGATGTTTTACTTGCTTATGAGATGAATGGAGAGACTCTTAACAGGGATCATGGCTATCCATTGCGTGTGGTTGTCCCTGGTGTCATTGGTGCCCGATCGGTTAAATGGCTTGACTCTATTAATGTGATTGCTGAGGAGTGTCAGGGTTTCTTTATGCAAAAAGATTACAAAATGTTTCCTCCCTCGGTGAACTGGGATAACATTGATTGGTCTACCAGAAGGCCACAAATGGATTTTCCCGTCCAGTGTGCAATATGTTCTCTAGAGGATGTGAATGCGATAAAGCCTGGAAAGGTAAAAATTACTGGGTATGCGGCATCAGGTGGTGGCCGTGGCATTGAGAGAGTAGATGTGTCTGTTGATGGTGGCAAAACCTGGATAGAAGCTTCTCGATATCAGAGAATGGGCATCCCATACATTTCAGAGCACGCAAGCAGTGATAAATGGGCATGGGTGCTTTTCGAGGCCATGGCTGATGTCCAACAGAACACCGAGATTGTTGCAAAAGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

357

Amino Acids

39.08

Weight (kDa)

7.62

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
AccB1I	GGYRCC	2 cut(s)	437, 644
AccBSI	CCGCTC	1 cut(s)	107
AccI	GTMKAC	2 cut(s)	135, 767
AccII	CGCG	1 cut(s)	100
AciI	CCGC	5 cut(s)	89, 95, 98, 105, 869
AclWI	GGATC	1 cut(s)	609
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	1 cut(s)	467
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	514
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	85, 410, 522, 536
AjnI	CCWGG	3 cut(s)	631, 841, 929
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	4 cut(s)	235, 314, 398, 941
AluI	AGCT	4 cut(s)	235, 314, 398, 941
Alw21I	GWGCWC	1 cut(s)	984
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	1 cut(s)	609
AoxI	GGCC	5 cut(s)	17, 505, 776, 883, 1020
ApoI	RAATTY	1 cut(s)	467
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AseI	ATTAAT	2 cut(s)	215, 675
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	4 cut(s)	17, 161, 330, 506
AsuC2I	CCSGG	2 cut(s)	6, 328
AsuHPI	GGTGA	2 cut(s)	199, 754
AvaII	GGWCC	2 cut(s)	161, 330
BaeGI	GKGCMC	1 cut(s)	649
BanI	GGYRCC	2 cut(s)	437, 644
Bbv12I	GWGCWC	1 cut(s)	984
BbvCI	CCTCAGC	1 cut(s)	687
BccI	CCATC	2 cut(s)	49, 911
BceAI	ACGGC	2 cut(s)	4, 870
BcgI	CGANNNNNNTGC	2 cut(s)	1037, 1071
BciT130I	CCWGG	3 cut(s)	633, 843, 931
BcnI	CCSGG	2 cut(s)	6, 328
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	2 cut(s)	395, 818
BfmI	CTRYAG	1 cut(s)	363
BfoI	RGCGCY	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	3 cut(s)	95, 98, 870
BlsI	GCNGC	3 cut(s)	96, 99, 871
Bme1390I	CCNGG	5 cut(s)	6, 328, 633, 843, 931
Bme18I	GGWCC	2 cut(s)	161, 330
BmgT120I	GGNCC	4 cut(s)	17, 161, 330, 506
BmiI	GGNNCC	6 cut(s)	39, 78, 93, 439, 508, 646
BmrFI	CCNGG	5 cut(s)	6, 328, 633, 843, 931
BmrI	ACTGGG	2 cut(s)	757, 870
BmsI	GCATC	2 cut(s)	881, 972
BmuI	ACTGGG	2 cut(s)	757, 870
BpmI	CTGGAG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	687
BpuMI	CCSGG	2 cut(s)	6, 328
BsaJI	CCNNGG	5 cut(s)	72, 631, 738, 886, 1023
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse1I	ACTGG	3 cut(s)	752, 799, 865
Bse3DI	GCAATG	1 cut(s)	614
BseBI	CCWGG	3 cut(s)	633, 843, 931
BseDI	CCNNGG	5 cut(s)	72, 631, 738, 886, 1023
BseGI	GGATG	5 cut(s)	49, 183, 358, 829, 963
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMI	GCAATG	1 cut(s)	614
BseMII	CTCAG	2 cut(s)	210, 678
BseNI	ACTGG	3 cut(s)	752, 799, 865
BseRI	GAGGAG	1 cut(s)	704
BseSI	GKGCMC	1 cut(s)	649
BseYI	CCCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	653
BshFI	GGCC	5 cut(s)	19, 507, 778, 885, 1022
BshNI	GGYRCC	2 cut(s)	437, 644
BsiEI	CGRYCG	1 cut(s)	653
BsiHKAI	GWGCWC	1 cut(s)	984
BsiSI	CCGG	3 cut(s)	5, 210, 328
BsiWI	CGTACG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	835
BsnI	GGCC	5 cut(s)	19, 507, 778, 885, 1022
Bsp1286I	GDGCHC	2 cut(s)	649, 984
Bsp143I	GATC	2 cut(s)	601, 650
Bsp19I	CCATGG	1 cut(s)	1023
BspACI	CCGC	5 cut(s)	89, 95, 98, 105, 869
BspANI	GGCC	5 cut(s)	19, 507, 778, 885, 1022
BspCNI	CTCAG	2 cut(s)	209, 679
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	6 cut(s)	39, 78, 93, 439, 508, 646
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	609
BspT107I	GGYRCC	2 cut(s)	437, 644
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	614
BsrI	ACTGG	3 cut(s)	752, 799, 865
BssECI	CCNNGG	5 cut(s)	72, 631, 738, 886, 1023
BssMI	GATC	2 cut(s)	601, 650
BssT1I	CCWWGG	2 cut(s)	72, 1023
Bst2UI	CCWGG	3 cut(s)	633, 843, 931
Bst4CI	ACNGT	4 cut(s)	161, 191, 291, 334
BstC8I	GCNNGC	2 cut(s)	984, 988
BstDEI	CTNAG	2 cut(s)	196, 687
BstDSI	CCRYGG	2 cut(s)	886, 1023
BstF5I	GGATG	5 cut(s)	49, 183, 358, 829, 963
BstFNI	CGCG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	2 cut(s)	604, 653
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	2 cut(s)	601, 650
BstMCI	CGRYCG	1 cut(s)	653
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	3 cut(s)	633, 843, 931
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	5 cut(s)	4, 326, 631, 841, 929
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	649
BstUI	CGCG	1 cut(s)	100
BsuRI	GGCC	5 cut(s)	19, 507, 778, 885, 1022
BtgI	CCRYGG	2 cut(s)	886, 1023
BtsCI	GGATG	5 cut(s)	49, 183, 358, 829, 963
BtsI	GCAGTG	1 cut(s)	997
BtsIMutI	CAGTG	3 cut(s)	296, 806, 997
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	2 cut(s)	984, 988
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	4 cut(s)	17, 161, 330, 506
CpoI	CGGWCCG	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	121
CspI	CGGWCCG	1 cut(s)	330
CviAII	CATG	4 cut(s)	461, 605, 1005, 1024
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	196, 687
DpnI	GATC	2 cut(s)	603, 652
DpnII	GATC	2 cut(s)	601, 650
EaeI	YGGCCR	1 cut(s)	883
Eco130I	CCWWGG	2 cut(s)	72, 1023
Eco32I	GATATC	2 cut(s)	250, 950
Eco47I	GGWCC	2 cut(s)	161, 330
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRII	CCWGG	3 cut(s)	631, 841, 929
EcoRV	GATATC	2 cut(s)	250, 950
EcoT14I	CCWWGG	2 cut(s)	72, 1023
ErhI	CCWWGG	2 cut(s)	72, 1023
FaeI	CATG	4 cut(s)	464, 608, 1008, 1027
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	4 cut(s)	460, 604, 1004, 1023
FblI	GTMKAC	2 cut(s)	135, 767
Fnu4HI	GCNGC	3 cut(s)	95, 98, 870
FokI	GGATG	5 cut(s)	36, 170, 365, 836, 950
Fsp4HI	GCNGC	3 cut(s)	95, 98, 870
FspBI	CTAG	2 cut(s)	395, 818
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	3 cut(s)	95, 98, 870
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	5 cut(s)	19, 507, 778, 885, 1022
HapII	CCGG	3 cut(s)	5, 210, 328
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	4 cut(s)	464, 608, 1008, 1027
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	2 cut(s)	136, 432
HindII	GTYRAC	2 cut(s)	136, 432
HindIII	AAGCTT	1 cut(s)	939
HinfI	GANTC	2 cut(s)	589, 668
HpaII	CCGG	3 cut(s)	5, 210, 328
HphI	GGTGA	2 cut(s)	199, 754
Hpy166II	GTNNAC	4 cut(s)	136, 432, 745, 768
Hpy188I	TCNGA	4 cut(s)	25, 419, 954, 979
Hpy188III	TCNNGA	4 cut(s)	45, 407, 818, 945
Hpy8I	GTNNAC	4 cut(s)	136, 432, 745, 768
Hpy99I	CGWCG	4 cut(s)	25, 121, 137, 182
HpyAV	CCTTC	3 cut(s)	214, 300, 768
HpyCH4III	ACNGT	4 cut(s)	161, 191, 291, 334
HpyCH4IV	ACGT	2 cut(s)	123, 284
HpyCH4V	TGCA	5 cut(s)	296, 389, 712, 806, 1058
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	2 cut(s)	196, 687
HpySE526I	ACGT	2 cut(s)	123, 284
Hsp92II	CATG	4 cut(s)	464, 608, 1008, 1027
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	601, 650
LmnI	GCTCC	2 cut(s)	37, 91
LweI	GCATC	2 cut(s)	881, 972
MaeI	CTAG	2 cut(s)	395, 818
MaeII	ACGT	2 cut(s)	123, 284
MaeIII	GTNAC	4 cut(s)	124, 191, 274, 285
MalI	GATC	2 cut(s)	603, 652
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	2 cut(s)	601, 650
MboII	GAAGA	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	649, 984
MluCI	AATT	3 cut(s)	67, 467, 855
MlyI	GAGTC	2 cut(s)	583, 662
MmeI	TCCRAC	2 cut(s)	397, 1060
MseI	TTAA	4 cut(s)	215, 594, 657, 675
MspI	CCGG	3 cut(s)	5, 210, 328
MspR9I	CCNGG	5 cut(s)	6, 328, 633, 843, 931
Mva1269I	GAATGC	1 cut(s)	835
MvaI	CCWGG	3 cut(s)	633, 843, 931
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	395
NciI	CCSGG	2 cut(s)	6, 328
NcoI	CCATGG	1 cut(s)	1023
NdeII	GATC	2 cut(s)	601, 650
NlaIII	CATG	4 cut(s)	464, 608, 1008, 1027
NlaIV	GGNNCC	6 cut(s)	39, 78, 93, 439, 508, 646
NmuCI	GTSAC	2 cut(s)	124, 274
NspI	RCATGY	1 cut(s)	464
PciI	ACATGT	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	835
Pfl23II	CGTACG	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	96, 99, 871
Ple19I	CGATCG	1 cut(s)	653
PleI	GAGTC	2 cut(s)	583, 662
PpsI	GAGTC	2 cut(s)	583, 662
PscI	ACATGT	1 cut(s)	460
PshBI	ATTAAT	2 cut(s)	215, 675
Psp6I	CCWGG	3 cut(s)	631, 841, 929
PspFI	CCCAGC	1 cut(s)	53
PspGI	CCWGG	3 cut(s)	631, 841, 929
PspLI	CGTACG	1 cut(s)	120
PspN4I	GGNNCC	6 cut(s)	39, 78, 93, 439, 508, 646
PspPI	GGNCC	4 cut(s)	17, 161, 330, 506
PvuI	CGATCG	1 cut(s)	653
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
Rsr2I	CGGWCCG	1 cut(s)	330
RsrII	CGGWCCG	1 cut(s)	330
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	215, 594, 657, 675
SatI	GCNGC	3 cut(s)	95, 98, 870
Sau3AI	GATC	2 cut(s)	601, 650
Sau96I	GGNCC	4 cut(s)	17, 161, 330, 506
SchI	GAGTC	2 cut(s)	583, 662
ScrFI	CCNGG	5 cut(s)	6, 328, 633, 843, 931
SduI	GDGCHC	2 cut(s)	649, 984
SfaNI	GCATC	2 cut(s)	881, 972
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	2 cut(s)	161, 330
Sse9I	AATT	3 cut(s)	67, 467, 855
SsiI	CCGC	5 cut(s)	89, 95, 98, 105, 869
SspMI	CTAG	2 cut(s)	395, 818
StyD4I	CCNGG	5 cut(s)	4, 326, 631, 841, 929
StyI	CCWWGG	2 cut(s)	72, 1023
TaaI	ACNGT	4 cut(s)	161, 191, 291, 334
TaiI	ACGT	2 cut(s)	126, 287
TaqI	TCGA	7 cut(s)	13, 46, 135, 177, 465, 946, 1017
TasI	AATT	3 cut(s)	67, 467, 855
TauI	GCSGC	3 cut(s)	97, 100, 872
Tru1I	TTAA	4 cut(s)	215, 594, 657, 675
Tru9I	TTAA	4 cut(s)	215, 594, 657, 675
TscAI	CASTG	3 cut(s)	296, 806, 997
TseFI	GTSAC	2 cut(s)	124, 274
Tsp45I	GTSAC	2 cut(s)	124, 274
TspDTI	ATGAA	2 cut(s)	257, 593
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	3 cut(s)	296, 806, 997
VpaK11BI	GGWCC	2 cut(s)	161, 330
VspI	ATTAAT	2 cut(s)	215, 675
XapI	RAATTY	1 cut(s)	467
XbaI	TCTAGA	1 cut(s)	817
XceI	RCATGY	1 cut(s)	464
XmiI	GTMKAC	2 cut(s)	135, 767
XspI	CTAG	2 cut(s)	395, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.