Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Forward (+)

25613882 .. 25614735

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTGTCTTGGAGGAAACGAGGGACCTTACAAGTCTAAAATTCCATTAATTCAAGCCACAAATGTGGATGCTGAGCCTCTAAACAGGGATCATCGCTATCCTCTGCGTATAATTGTTCCTGGTGTGATTGGTGCTCGATCTGGATTTTGTACGCAAACGGACTATAAGATGTTTCGTCCTACATTGAACTGGGAAAATATAGATTGGTCAACCAGAAGGCCTCGGGTGGATTTTCCAGTTCAGTGTGTGATTTGTTCTTTGGAGGAAGAAAATACAGCAGAGCCCGGAAAGTTTCCGAAGGTGGTCGAGGAATTGAGCGAGTCGATGTATCTTTGGACGGTGGCAAGACATGGGAGGAATCAATCAAATACCAGAAGAGTACTGAAGTCATATCTCGCTGATGATACTAGTGCACCACAAGTGGGCATGGGTGTTGTTCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

149

Amino Acids

16.71

Weight (kDa)

7.66

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	151, 381
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	53, 187, 440
AhlI	ACTAGT	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	118
AleI	CACNNNNGTG	1 cut(s)	62
Alw21I	GWGCWC	2 cut(s)	136, 415
Alw44I	GTGCAC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	96
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	1 cut(s)	218
ApaLI	GTGCAC	1 cut(s)	411
ApoI	RAATTY	1 cut(s)	39
AseI	ATTAAT	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	285
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	2 cut(s)	136, 415
BciT130I	CCWGG	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	285
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	1 cut(s)	408
BlpI	GCTNAGC	1 cut(s)	72
BmcAI	AGTACT	1 cut(s)	381
Bme1390I	CCNGG	2 cut(s)	120, 285
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	120, 285
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	194, 236
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	194, 236
BseSI	GKGCMC	1 cut(s)	415
BshFI	GGCC	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	136, 415
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	3 cut(s)	136, 285, 415
Bsp143I	GATC	2 cut(s)	88, 137
Bsp1720I	GCTNAGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	24
BspPI	GGATC	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	194, 236
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	88, 137
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	91, 140
BstMBI	GATC	2 cut(s)	88, 137
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	2 cut(s)	118, 283
BstSLI	GKGCMC	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	150, 380
CviAII	CATG	2 cut(s)	350, 427
CviJI	RGCY	4 cut(s)	56, 76, 220, 283
CviKI_1	RGCY	4 cut(s)	56, 76, 220, 283
CviQI	GTAC	2 cut(s)	150, 380
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	90, 139
DpnII	GATC	2 cut(s)	88, 137
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	2 cut(s)	353, 430
FaiI	YATR	6 cut(s)	110, 165, 200, 351, 391, 428
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	2 cut(s)	349, 426
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	2 cut(s)	353, 430
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	2 cut(s)	320, 358
HpaII	CCGG	1 cut(s)	285
Hpy166II	GTNNAC	2 cut(s)	210, 413
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	1 cut(s)	141
Hpy8I	GTNNAC	2 cut(s)	210, 413
HpyAV	CCTTC	2 cut(s)	210, 292
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	1 cut(s)	413
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	353, 430
Kzo9I	GATC	2 cut(s)	88, 137
LpnPI	CCDG	9 cut(s)	70, 105, 126, 132, 175, 226, 249, 298, 385
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	408
MalI	GATC	2 cut(s)	90, 139
MboI	GATC	2 cut(s)	88, 137
MboII	GAAGA	2 cut(s)	278, 387
MhlI	GDGCHC	3 cut(s)	136, 285, 415
MluCI	AATT	4 cut(s)	39, 48, 111, 311
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	8 cut(s)	5, 13, 87, 111, 231, 256, 301, 348
MseI	TTAA	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	120, 285
MvaI	CCWGG	1 cut(s)	120
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	2 cut(s)	88, 137
NlaIII	CATG	2 cut(s)	353, 430
NlaIV	GGNNCC	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	23
PshBI	ATTAAT	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	23
PspPPI	RGGWCCY	1 cut(s)	23
RsaI	GTAC	2 cut(s)	151, 381
RsaNI	GTAC	2 cut(s)	150, 380
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	47
Sau3AI	GATC	2 cut(s)	88, 137
Sau96I	GGNCC	1 cut(s)	23
ScaI	AGTACT	1 cut(s)	381
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	120, 285
SduI	GDGCHC	3 cut(s)	136, 285, 415
SetI	ASST	2 cut(s)	28, 303
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	62
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	4 cut(s)	39, 48, 111, 311
SseBI	AGGCCT	1 cut(s)	220
SspMI	CTAG	1 cut(s)	408
StuI	AGGCCT	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	118, 283
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	3 cut(s)	136, 306, 323
TasI	AATT	4 cut(s)	39, 48, 111, 311
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	23
VspI	ATTAAT	1 cut(s)	47
XapI	RAATTY	1 cut(s)	39
XspI	CTAG	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.