Rh4DG304400

Sulfite oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002104
Physical Location & Seq
Forward (+)
52668411 .. 52677138
8728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG304400.1

Sequence Viewer

Length: 615 bp
ATGAACGTCGCCAACGACATGATTGGAAAAAAAAGGCAACATCCGGCTGGTGGACAATTATTGTCCGTCGGGGAAAGTGAAACCCGCCGACTTCGATCTTGTGTTCACTGCTGCGAATGCCCTGGTCGAACATCACCATCCGCCTCTGGTGAAACCCAAGCTGCTCTGAAAGCCAAGGCCAAGGCTCAGATGGACAAGGGTGCTCGATTGTTGAAGAACCTCGCCTTGGCTTTCTTGCGTTTTTCTATGGAAGAAAATACAGTAGATCCTGGAAAGATTGTAGTTCATGGATATGGAGTGTCTGGAGGCGGTCGGGGGATTGAGCGAGTAGATGTATCTTTCGATGGAGGCAAGACATGGGAGGAAGCAATCAGATACCAGAAGAGTACTGAAGTCCCATACGTTGCTGATGATACAAGTAGTGGTGACAAGTGGGCATGGGTGCTGTTTAAGGCTGAAGCAGATCTCTCTCACAATACTGAAATCGTCACCAAAGCAGTTGATATAGCTGGAAATGTCCAACCCGAAAATGTGGGTGTCATCTGGAACCTGAGAGGAATACAAAACACGTCTTGGCACAGGGTCCGTGTTGAAGTCGAGGACCCTAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 ko01100 ko01120 map00920 map01100 map01120
Pfam Domains
Protein Families
Mo-co_dimer Oxidored_molyb

Protein Analysis

204

Amino Acids

22.31

Weight (kDa)

6.96

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mo-co_dimer PF03404 90 - 199 1.6e-30 Mo-co oxidoreductase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 85, 141, 309
AclWI GGATC 1 cut(s) 260
AcuI CTGAAG 2 cut(s) 411, 477
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 2 cut(s) 50, 226
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 2 cut(s) 214, 593
AjiI CACGTC 1 cut(s) 570
AjnI CCWGG 2 cut(s) 121, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 161, 509
AluI AGCT 2 cut(s) 161, 509
Alw21I GWGCWC 1 cut(s) 205
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 111, 161
AspS9I GGNCC 2 cut(s) 583, 601
AsuHPI GGTGA 4 cut(s) 126, 161, 437, 481
AvaII GGWCC 2 cut(s) 583, 601
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 2 cut(s) 98, 148
BccI CCATC 3 cut(s) 145, 184, 338
BciT130I CCWGG 2 cut(s) 123, 270
BglII AGATCT 1 cut(s) 463
BisI GCNGC 2 cut(s) 112, 162
BlsI GCNGC 2 cut(s) 113, 163
BmcAI AGTACT 1 cut(s) 388
Bme1390I CCNGG 2 cut(s) 123, 270
Bme18I GGWCC 2 cut(s) 583, 601
BmgBI CACGTC 1 cut(s) 570
BmgT120I GGNCC 2 cut(s) 583, 601
BmiI GGNNCC 3 cut(s) 548, 584, 603
BmrFI CCNGG 2 cut(s) 123, 270
BpmI CTGGAG 1 cut(s) 324
BsaJI CCNNGG 4 cut(s) 121, 174, 180, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 226
BseBI CCWGG 2 cut(s) 123, 270
BseDI CCNNGG 4 cut(s) 121, 174, 180, 225
BseGI GGATG 2 cut(s) 40, 137
BseLI CCNNNNNNNGG 2 cut(s) 50, 226
BseMII CTCAG 2 cut(s) 200, 542
BseXI GCAGC 2 cut(s) 98, 148
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 50, 226
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 3 cut(s) 95, 265, 463
BspACI CCGC 3 cut(s) 85, 141, 309
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 199, 543
BspLI GGNNCC 3 cut(s) 548, 584, 603
BspPI GGATC 1 cut(s) 260
BssECI CCNNGG 4 cut(s) 121, 174, 180, 225
BssMI GATC 3 cut(s) 95, 265, 463
BssT1I CCWWGG 3 cut(s) 174, 180, 225
Bst2UI CCWGG 2 cut(s) 123, 270
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 186, 551
BstF5I GGATG 2 cut(s) 40, 137
BstKTI GATC 3 cut(s) 98, 268, 466
BstMBI GATC 3 cut(s) 95, 265, 463
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 2 cut(s) 117, 170
BstNI CCWGG 2 cut(s) 123, 270
BstSCI CCNGG 2 cut(s) 121, 268
BstV1I GCAGC 2 cut(s) 98, 148
BstX2I RGATCY 2 cut(s) 265, 463
BstYI RGATCY 2 cut(s) 265, 463
BsuRI GGCC 1 cut(s) 179
BtrI CACGTC 1 cut(s) 570
BtsCI GGATG 2 cut(s) 40, 137
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 583, 601
Csp6I GTAC 1 cut(s) 387
CviAII CATG 4 cut(s) 19, 287, 357, 438
CviJI RGCY 8 cut(s) 47, 161, 173, 179, 185, 230, 455, 509
CviKI_1 RGCY 8 cut(s) 47, 161, 173, 179, 185, 230, 455, 509
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 2 cut(s) 186, 551
DpnI GATC 3 cut(s) 97, 267, 465
DpnII GATC 3 cut(s) 95, 265, 463
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
EciI GGCGGA 1 cut(s) 130
Eco130I CCWWGG 3 cut(s) 174, 180, 225
Eco47I GGWCC 2 cut(s) 583, 601
Eco57I CTGAAG 2 cut(s) 411, 477
EcoO109I RGGNCCY 1 cut(s) 601
EcoRII CCWGG 2 cut(s) 121, 268
EcoT14I CCWWGG 3 cut(s) 174, 180, 225
ErhI CCWWGG 3 cut(s) 174, 180, 225
FaeI CATG 4 cut(s) 22, 290, 360, 441
FaiI YATR 8 cut(s) 20, 248, 288, 294, 358, 400, 439, 506
FaqI GGGAC 1 cut(s) 380
FatI CATG 4 cut(s) 18, 286, 356, 437
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 2 cut(s) 112, 162
FokI GGATG 2 cut(s) 27, 124
Fsp4HI GCNGC 2 cut(s) 112, 162
GluI GCNGC 2 cut(s) 112, 162
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 44
Hin1II CATG 4 cut(s) 22, 290, 360, 441
HpaII CCGG 1 cut(s) 44
HphI GGTGA 4 cut(s) 126, 161, 437, 481
Hpy166II GTNNAC 2 cut(s) 53, 106
Hpy188I TCNGA 4 cut(s) 168, 189, 374, 614
Hpy188III TCNNGA 2 cut(s) 303, 544
Hpy8I GTNNAC 2 cut(s) 53, 106
Hpy99I CGWCG 2 cut(s) 11, 71
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 3 cut(s) 6, 402, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 170
HpyF3I CTNAG 2 cut(s) 186, 551
HpySE526I ACGT 3 cut(s) 6, 402, 569
Hsp92II CATG 4 cut(s) 22, 290, 360, 441
Kzo9I GATC 3 cut(s) 95, 265, 463
Lsp1109I GCAGC 2 cut(s) 98, 148
MaeII ACGT 3 cut(s) 6, 402, 569
MaeIII GTNAC 2 cut(s) 425, 487
MalI GATC 3 cut(s) 97, 267, 465
MboI GATC 3 cut(s) 95, 265, 463
MboII GAAGA 3 cut(s) 226, 263, 394
MflI RGATCY 2 cut(s) 265, 463
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 2 cut(s) 56, 607
MmeI TCCRAC 1 cut(s) 544
MnlI CCTC 7 cut(s) 154, 230, 299, 341, 355, 548, 592
MseI TTAA 1 cut(s) 450
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 123, 270
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 2 cut(s) 123, 270
MwoI GCNNNNNNNGC 2 cut(s) 117, 170
NdeII GATC 3 cut(s) 95, 265, 463
NlaIII CATG 4 cut(s) 22, 290, 360, 441
NlaIV GGNNCC 3 cut(s) 548, 584, 603
NmuCI GTSAC 2 cut(s) 425, 487
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PctI GAATGC 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 2 cut(s) 113, 163
PpuMI RGGWCCY 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 601
Psp6I CCWGG 2 cut(s) 121, 268
PspGI CCWGG 2 cut(s) 121, 268
PspN4I GGNNCC 3 cut(s) 548, 584, 603
PspPI GGNCC 2 cut(s) 583, 601
PspPPI RGGWCCY 1 cut(s) 601
PsuI RGATCY 2 cut(s) 265, 463
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 2 cut(s) 112, 162
Sau3AI GATC 3 cut(s) 95, 265, 463
Sau96I GGNCC 2 cut(s) 583, 601
ScaI AGTACT 1 cut(s) 388
ScrFI CCNGG 2 cut(s) 123, 270
SduI GDGCHC 1 cut(s) 205
SetI ASST 7 cut(s) 9, 163, 222, 405, 511, 552, 572
SinI GGWCC 2 cut(s) 583, 601
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 2 cut(s) 56, 607
SsiI CCGC 3 cut(s) 85, 141, 309
StyD4I CCNGG 2 cut(s) 121, 268
StyI CCWWGG 3 cut(s) 174, 180, 225
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 3 cut(s) 9, 405, 572
TaqI TCGA 5 cut(s) 94, 127, 205, 342, 597
TasI AATT 2 cut(s) 56, 607
TatI WGTACW 1 cut(s) 386
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 1 cut(s) 113
TseFI GTSAC 2 cut(s) 425, 487
TseI GCWGC 2 cut(s) 111, 161
Tsp45I GTSAC 2 cut(s) 425, 487
TspDTI ATGAA 2 cut(s) 17, 275
TspGWI ACGGA 2 cut(s) 55, 575
TspRI CASTG 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 583, 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
ZrmI AGTACT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.