RLG00000022333

Sulfite oxidase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
82652252 .. 82656179
3928 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022333

Sequence Viewer

Length: 1086 bp
ATGCCCGGCGTCACTGGTCCTTCAGATTACTCGCGGGAGCCGCCTCGACATCCCAGCCTCAAAATCAATGCCAAGGAGCCTTTCAACGCCGAGCCACCGCGCTCAGCTCTCGGCGCCGCTTACGTCACTCCGGTGGAGTTCTTCTACAAGAGAAACCACGGTCCTATTCCAGTAGTCGATGACATCCACAGCTACTCTGTTTACATAACCGGATTGATCGAAAATCCGAAGCAGCTGTTTTTGAGTGATATCAAGGCGCTTCCAAAGTATAATGTCACTGCTACATTGCAGTGTGCAGGTAATAGGAGGACAGCTATGAGCCAAACTCGGACTGTCAAGGGAGTAGGGTGGGATGTTTCTGCGATAGGAAATGCTGTATGGGGTGGTGCGAAATTGGCTGATGTGCTTGAACTTGTGGGAATACCAAAGTTGACAGGCGTAACTAAATCTGGTGGAAAACATGTCGAGTTTGTAAGCATTGATAGGTGTAAGACCCTAAACAGGGATCATGGGTATCCATTGCGTGTAGTTGTACCTGGTGTTATAGGTGCCCGTTCTGTTAAATGGCTTGATTCTATTAATGTCACTGCAGAGGAATGTCAGGGCTTCTTTATGCAAAAGGACTACAAAATGTTTCCACCTTCAGTAAACTGGGATAACATTAATTGGTCCACCAGGAGGCCACAAATGGATTTTCCTGTCCAGTGTGTAATTTGTTCTTTAGAGGATGTGAATGCAATAAAGCCTGGAAAGGTAAAAGTCAGTGGTTATGCAGCATCAGGAGGTGGTCGTGGCATCGAGAGAGTTGATGTGTCTGTTGATGGTGGCAATACCTGGGTAGAAGCATCTAGACATCAGAAAACTGGCATCCCATATATTGCAGAGGCCACATGCAGTGATAAATGGGCATGGGTACTTTTTGAGGCCATGGTTGATGTCCAACAGAGCACTCAAATTGTTGCAAAAGCAGTGGATTCAGCAGCAAATGTACAACCTGAAAAAGTGGAGGACATTTGGAACTTGAGAGGGATACTGAACACTTCATGGCATAGAGTACAAGTTCGAGTTGGCCACGCAAATTTGTAG

Protein Analysis

362

Amino Acids

39.67

Weight (kDa)

8.9

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_molyb PF00174 53 - 162 8.6e-25 Oxidoreductase molybdopterin binding domain
Oxidored_molyb PF00174 165 - 203 1.6e-13 Oxidoreductase molybdopterin binding domain
Mo-co_dimer PF03404 228 - 356 1.7e-37 Mo-co oxidoreductase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 287
AccB1I GGYRCC 2 cut(s) 113, 548
AccII CGCG 2 cut(s) 34, 100
AciI CCGC 4 cut(s) 34, 41, 98, 117
AclWI GGATC 1 cut(s) 513
AcoI YGGCCR 1 cut(s) 1069
AcsI RAATTY 1 cut(s) 1078
AcuI CTGAAG 2 cut(s) 6, 627
AcyI GRCGYC 2 cut(s) 9, 114
AfaI GTAC 4 cut(s) 534, 915, 990, 1056
AfiI CCNNNNNNNGG 3 cut(s) 501, 502, 678
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 2 cut(s) 85, 410
AjnI CCWGG 4 cut(s) 535, 674, 745, 833
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 4 cut(s) 107, 192, 235, 314
AluI AGCT 4 cut(s) 107, 192, 235, 314
Alw21I GWGCWC 1 cut(s) 950
AlwI GGATC 1 cut(s) 513
AoxI GGCC 4 cut(s) 680, 885, 924, 1069
ApeKI GCWGC 3 cut(s) 232, 773, 980
ApoI RAATTY 1 cut(s) 1078
AseI ATTAAT 2 cut(s) 579, 663
AspLEI GCGC 3 cut(s) 102, 116, 259
AspS9I GGNCC 3 cut(s) 17, 161, 669
AsuC2I CCSGG 1 cut(s) 6
AvaII GGWCC 3 cut(s) 17, 161, 669
BaeGI GKGCMC 1 cut(s) 553
BalI TGGCCA 1 cut(s) 1071
BanI GGYRCC 2 cut(s) 113, 548
Bbv12I GWGCWC 1 cut(s) 950
BbvI GCAGC 3 cut(s) 244, 785, 992
BccI CCATC 1 cut(s) 815
BciT130I CCWGG 4 cut(s) 537, 676, 747, 835
BciVI GTATCC 2 cut(s) 525, 1023
BcnI CCSGG 1 cut(s) 6
BfaI CTAG 1 cut(s) 849
BfmI CTRYAG 1 cut(s) 588
BfoI RGCGCY 2 cut(s) 117, 260
BfuAI ACCTGC 1 cut(s) 287
BfuI GTATCC 2 cut(s) 525, 1023
BisI GCNGC 5 cut(s) 41, 117, 233, 774, 981
BlpI GCTNAGC 1 cut(s) 103
BlsI GCNGC 5 cut(s) 42, 118, 234, 775, 982
Bme1390I CCNGG 5 cut(s) 6, 537, 676, 747, 835
Bme18I GGWCC 3 cut(s) 17, 161, 669
BmgT120I GGNCC 3 cut(s) 17, 161, 669
BmiI GGNNCC 4 cut(s) 39, 78, 115, 550
BmrFI CCNGG 5 cut(s) 6, 537, 676, 747, 835
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 4 cut(s) 785, 804, 854, 876
BmuI ACTGGG 1 cut(s) 661
BplI GAGNNNNNCTC 2 cut(s) 310, 342
Bpu1102I GCTNAGC 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 1042
BpuMI CCSGG 1 cut(s) 6
BsaHI GRCGYC 2 cut(s) 9, 114
BsaJI CCNNGG 4 cut(s) 72, 157, 834, 927
BsaWI WCCGGW 2 cut(s) 130, 209
Bsc4I CCNNNNNNNGG 3 cut(s) 501, 502, 678
Bse1I ACTGG 5 cut(s) 19, 170, 656, 703, 868
Bse3DI GCAATG 2 cut(s) 284, 518
BseBI CCWGG 4 cut(s) 537, 676, 747, 835
BseDI CCNNGG 4 cut(s) 72, 157, 834, 927
BseGI GGATG 5 cut(s) 49, 183, 358, 733, 867
BseLI CCNNNNNNNGG 3 cut(s) 501, 502, 678
BseMI GCAATG 2 cut(s) 284, 518
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 5 cut(s) 19, 170, 656, 703, 868
BseSI GKGCMC 1 cut(s) 553
BseXI GCAGC 3 cut(s) 244, 785, 992
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 315
Bsh1236I CGCG 2 cut(s) 34, 100
BshFI GGCC 4 cut(s) 682, 887, 926, 1071
BshNI GGYRCC 2 cut(s) 113, 548
BsiHKAI GWGCWC 1 cut(s) 950
BsiSI CCGG 3 cut(s) 6, 131, 210
BslI CCNNNNNNNGG 3 cut(s) 501, 502, 678
BsmI GAATGC 1 cut(s) 739
BsnI GGCC 4 cut(s) 682, 887, 926, 1071
Bsp1286I GDGCHC 2 cut(s) 553, 950
Bsp1407I TGTACA 1 cut(s) 988
Bsp143I GATC 2 cut(s) 216, 505
Bsp1720I GCTNAGC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 927
BspACI CCGC 4 cut(s) 34, 41, 98, 117
BspANI GGCC 4 cut(s) 682, 887, 926, 1071
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 2 cut(s) 34, 100
BspLI GGNNCC 4 cut(s) 39, 78, 115, 550
BspMAI CTGCAG 1 cut(s) 592
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 513
BspT107I GGYRCC 2 cut(s) 113, 548
BsrDI GCAATG 2 cut(s) 284, 518
BsrGI TGTACA 1 cut(s) 988
BsrI ACTGG 5 cut(s) 19, 170, 656, 703, 868
BssECI CCNNGG 4 cut(s) 72, 157, 834, 927
BssMI GATC 2 cut(s) 216, 505
BssNI GRCGYC 2 cut(s) 9, 114
BssT1I CCWWGG 2 cut(s) 72, 927
Bst2UI CCWGG 4 cut(s) 537, 676, 747, 835
Bst4CI ACNGT 2 cut(s) 161, 334
BstACI GRCGYC 2 cut(s) 9, 114
BstAUI TGTACA 1 cut(s) 988
BstDEI CTNAG 1 cut(s) 103
BstDSI CCRYGG 2 cut(s) 157, 927
BstF5I GGATG 5 cut(s) 49, 183, 358, 733, 867
BstFNI CGCG 2 cut(s) 34, 100
BstH2I RGCGCY 2 cut(s) 117, 260
BstHHI GCGC 3 cut(s) 102, 116, 259
BstKTI GATC 2 cut(s) 219, 508
BstMBI GATC 2 cut(s) 216, 505
BstMWI GCNNNNNNNGC 3 cut(s) 40, 113, 395
BstNI CCWGG 4 cut(s) 537, 676, 747, 835
BstNSI RCATGY 2 cut(s) 464, 894
BstSCI CCNGG 5 cut(s) 4, 535, 674, 745, 833
BstSFI CTRYAG 1 cut(s) 588
BstSLI GKGCMC 1 cut(s) 553
BstUI CGCG 2 cut(s) 34, 100
BstV1I GCAGC 3 cut(s) 244, 785, 992
BsuI GTATCC 2 cut(s) 525, 1023
BsuRI GGCC 4 cut(s) 682, 887, 926, 1071
BtgI CCRYGG 2 cut(s) 157, 927
BtsCI GGATG 5 cut(s) 49, 183, 358, 733, 867
BtsI GCAGTG 5 cut(s) 276, 296, 585, 901, 975
BtsIMutI CAGTG 8 cut(s) 12, 276, 296, 585, 710, 769, 901, 975
BveI ACCTGC 1 cut(s) 287
CfoI GCGC 3 cut(s) 102, 116, 259
Cfr13I GGNCC 3 cut(s) 17, 161, 669
CsiI ACCWGGT 1 cut(s) 535
Csp6I GTAC 4 cut(s) 533, 914, 989, 1055
CspCI CAANNNNNGTGG 2 cut(s) 951, 986
CviAII CATG 6 cut(s) 461, 509, 891, 909, 928, 1044
CviQI GTAC 4 cut(s) 533, 914, 989, 1055
DdeI CTNAG 1 cut(s) 103
DinI GGCGCC 1 cut(s) 115
DpnI GATC 2 cut(s) 218, 507
DpnII GATC 2 cut(s) 216, 505
EaeI YGGCCR 1 cut(s) 1069
Eco130I CCWWGG 2 cut(s) 72, 927
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 3 cut(s) 17, 161, 669
Eco57I CTGAAG 2 cut(s) 6, 627
EcoRII CCWGG 4 cut(s) 535, 674, 745, 833
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 72, 927
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 2 cut(s) 72, 927
FaeI CATG 6 cut(s) 464, 512, 894, 912, 931, 1047
FatI CATG 6 cut(s) 460, 508, 890, 908, 927, 1043
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 5 cut(s) 41, 117, 233, 774, 981
FokI GGATG 5 cut(s) 36, 170, 365, 740, 854
Fsp4HI GCNGC 5 cut(s) 41, 117, 233, 774, 981
FspBI CTAG 1 cut(s) 849
GlaI GCGC 3 cut(s) 101, 115, 258
GluI GCNGC 5 cut(s) 41, 117, 233, 774, 981
GsaI CCCAGC 1 cut(s) 57
HaeII RGCGCY 2 cut(s) 117, 260
HaeIII GGCC 4 cut(s) 682, 887, 926, 1071
HapII CCGG 3 cut(s) 6, 131, 210
HhaI GCGC 3 cut(s) 102, 116, 259
Hin1I GRCGYC 2 cut(s) 9, 114
Hin1II CATG 6 cut(s) 464, 512, 894, 912, 931, 1047
Hin6I GCGC 3 cut(s) 100, 114, 257
HinP1I GCGC 3 cut(s) 100, 114, 257
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 2 cut(s) 572, 974
HpaII CCGG 3 cut(s) 6, 131, 210
Hpy166II GTNNAC 4 cut(s) 202, 432, 649, 672
Hpy188I TCNGA 4 cut(s) 25, 228, 330, 858
Hpy188III TCNNGA 3 cut(s) 780, 799, 849
Hpy8I GTNNAC 4 cut(s) 202, 432, 649, 672
HpyAV CCTTC 2 cut(s) 30, 651
HpyCH4III ACNGT 2 cut(s) 161, 334
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 9 cut(s) 289, 296, 590, 616, 737, 773, 881, 894, 962
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 113, 395
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 2 cut(s) 9, 114
Hsp92II CATG 6 cut(s) 464, 512, 894, 912, 931, 1047
HspAI GCGC 3 cut(s) 100, 114, 257
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 2 cut(s) 216, 505
LmnI GCTCC 2 cut(s) 37, 76
Lsp1109I GCAGC 3 cut(s) 244, 785, 992
LweI GCATC 4 cut(s) 785, 804, 854, 876
MabI ACCWGGT 1 cut(s) 535
MaeI CTAG 1 cut(s) 849
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 5 cut(s) 10, 124, 274, 439, 583
MalI GATC 2 cut(s) 218, 507
MboI GATC 2 cut(s) 216, 505
MboII GAAGA 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 553, 950
MlsI TGGCCA 1 cut(s) 1071
MluCI AATT 5 cut(s) 392, 664, 711, 954, 1078
MluNI TGGCCA 1 cut(s) 1071
Mly113I GGCGCC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 964
Mox20I TGGCCA 1 cut(s) 1071
MscI TGGCCA 1 cut(s) 1071
MseI TTAA 3 cut(s) 561, 579, 663
MslI CAYNNNNRTG 2 cut(s) 131, 289
Msp20I TGGCCA 1 cut(s) 1071
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 3 cut(s) 6, 131, 210
MspR9I CCNGG 5 cut(s) 6, 537, 676, 747, 835
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 4 cut(s) 537, 676, 747, 835
MvnI CGCG 2 cut(s) 34, 100
MwoI GCNNNNNNNGC 3 cut(s) 40, 113, 395
NarI GGCGCC 1 cut(s) 114
NciI CCSGG 1 cut(s) 6
NcoI CCATGG 1 cut(s) 927
NdeII GATC 2 cut(s) 216, 505
NlaIII CATG 6 cut(s) 464, 512, 894, 912, 931, 1047
NlaIV GGNNCC 4 cut(s) 39, 78, 115, 550
NmeAIII GCCGAG 2 cut(s) 90, 115
NmuCI GTSAC 4 cut(s) 10, 124, 274, 583
NspI RCATGY 2 cut(s) 464, 894
OliI CACNNNNGTG 1 cut(s) 131
PciI ACATGT 1 cut(s) 460
PctI GAATGC 1 cut(s) 739
PfeI GAWTC 2 cut(s) 572, 974
PkrI GCNGC 5 cut(s) 42, 118, 234, 775, 982
PluTI GGCGCC 1 cut(s) 117
PscI ACATGT 1 cut(s) 460
PshBI ATTAAT 2 cut(s) 579, 663
Psp6I CCWGG 4 cut(s) 535, 674, 745, 833
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 4 cut(s) 535, 674, 745, 833
PspN4I GGNNCC 4 cut(s) 39, 78, 115, 550
PspPI GGNCC 3 cut(s) 17, 161, 669
PstI CTGCAG 1 cut(s) 592
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 4 cut(s) 534, 915, 990, 1056
RsaNI GTAC 4 cut(s) 533, 914, 989, 1055
RseI CAYNNNNRTG 2 cut(s) 131, 289
SaqAI TTAA 3 cut(s) 561, 579, 663
SatI GCNGC 5 cut(s) 41, 117, 233, 774, 981
Sau3AI GATC 2 cut(s) 216, 505
Sau96I GGNCC 3 cut(s) 17, 161, 669
ScrFI CCNGG 5 cut(s) 6, 537, 676, 747, 835
SduI GDGCHC 2 cut(s) 553, 950
SexAI ACCWGGT 1 cut(s) 535
SfaNI GCATC 4 cut(s) 785, 804, 854, 876
SfcI CTRYAG 1 cut(s) 588
SfoI GGCGCC 1 cut(s) 115
SinI GGWCC 3 cut(s) 17, 161, 669
SmiMI CAYNNNNRTG 2 cut(s) 131, 289
SmlI CTYRAG 1 cut(s) 1021
SmoI CTYRAG 1 cut(s) 1021
Sse9I AATT 5 cut(s) 392, 664, 711, 954, 1078
SsiI CCGC 4 cut(s) 34, 41, 98, 117
SspDI GGCGCC 1 cut(s) 113
SspMI CTAG 1 cut(s) 849
StyD4I CCNGG 5 cut(s) 4, 535, 674, 745, 833
StyI CCWWGG 2 cut(s) 72, 927
TaaI ACNGT 2 cut(s) 161, 334
TaiI ACGT 1 cut(s) 126
TaqI TCGA 6 cut(s) 46, 177, 219, 465, 798, 1063
TasI AATT 5 cut(s) 392, 664, 711, 954, 1078
TatI WGTACW 2 cut(s) 988, 1054
TauI GCSGC 2 cut(s) 43, 119
TfiI GAWTC 2 cut(s) 572, 974
Tru1I TTAA 3 cut(s) 561, 579, 663
Tru9I TTAA 3 cut(s) 561, 579, 663
TscAI CASTG 8 cut(s) 19, 283, 296, 592, 710, 769, 901, 975
TseFI GTSAC 4 cut(s) 10, 124, 274, 583
TseI GCWGC 3 cut(s) 232, 773, 980
Tsp45I GTSAC 4 cut(s) 10, 124, 274, 583
TspDTI ATGAA 1 cut(s) 1032
TspRI CASTG 8 cut(s) 19, 283, 296, 592, 710, 769, 901, 975
VpaK11BI GGWCC 3 cut(s) 17, 161, 669
VspI ATTAAT 2 cut(s) 579, 663
XapI RAATTY 1 cut(s) 1078
XbaI TCTAGA 1 cut(s) 848
XceI RCATGY 2 cut(s) 464, 894
XspI CTAG 1 cut(s) 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.