Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Reverse (-)

32931145 .. 32935573

Gene Structure 4429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG292700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCGAGATTCGGTCATGAAGATCACCGCACACGATGTCTTCTCTGCCAAGAACTCCGGCGTCGACGCCTGGGCCCACAGGTTCTACCACAACTTGAATCTCGTGGGAATACCGAAGTTGACAGGCACCACTAAATCTGGTGGAAAACATATTGAGTTTGTAAGCGATAATAGGTGTAAGGTTTCAATTCCCATACATTTCTTCTGCAACAGATCTTTAATATGTGTACTGGTGTCGTATGCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

82

Amino Acids

9.14

Weight (kDa)

9.45

Isoelectric Point (pI)

24.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	1 cut(s)	27
AcyI	GRCGYC	2 cut(s)	60, 66
AfaI	GTAC	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	97, 186
AjnI	CCWGG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	72
ApaI	GGGCCC	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	72, 73
AsuHPI	GGTGA	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	70
BglII	AGATCT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	72, 73
BmiI	GGNNCC	2 cut(s)	74, 127
BmrFI	CCNGG	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	31
BsaHI	GRCGYC	2 cut(s)	60, 66
BsaJI	CCNNGG	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	57
BsnI	GGCC	1 cut(s)	74
Bsp120I	GGGCCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	21, 212
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	74, 127
BspT107I	GGYRCC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	21, 212
BssNI	GRCGYC	2 cut(s)	60, 66
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	70
BstACI	GRCGYC	2 cut(s)	60, 66
BstKTI	GATC	2 cut(s)	24, 215
BstMBI	GATC	2 cut(s)	21, 212
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	74
CciI	TCATGA	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	72, 73
CseI	GACGC	2 cut(s)	49, 74
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	1 cut(s)	74
CviKI_1	RGCY	1 cut(s)	74
CviQI	GTAC	1 cut(s)	227
DpnI	GATC	2 cut(s)	23, 214
DpnII	GATC	2 cut(s)	21, 212
Eco24I	GRGCYC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	19
FaiI	YATR	5 cut(s)	17, 150, 194, 223, 240
FatI	CATG	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	2 cut(s)	49, 74
Hin1I	GRCGYC	2 cut(s)	60, 66
Hin1II	CATG	1 cut(s)	19
HincII	GTYRAC	2 cut(s)	64, 120
HindII	GTYRAC	2 cut(s)	64, 120
HinfI	GANTC	2 cut(s)	8, 97
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	64, 120, 227
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	3 cut(s)	64, 120, 227
Hpy99I	CGWCG	2 cut(s)	65, 68
HpyCH4V	TGCA	2 cut(s)	207, 242
Hsp92I	GRCGYC	2 cut(s)	60, 66
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	21, 212
LpnPI	CCDG	7 cut(s)	55, 64, 70, 82, 108, 123, 215
MalI	GATC	2 cut(s)	23, 214
MboI	GATC	2 cut(s)	21, 212
MboII	GAAGA	3 cut(s)	31, 31, 193
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	1 cut(s)	186
MseI	TTAA	1 cut(s)	218
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
NdeII	GATC	2 cut(s)	21, 212
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	2 cut(s)	74, 127
PagI	TCATGA	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	8, 97
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	74, 127
PspOMI	GGGCCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	72, 73
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	218
Sau3AI	GATC	2 cut(s)	21, 212
Sau96I	GGNCC	2 cut(s)	72, 73
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	3 cut(s)	83, 176, 183
SgrDI	CGTCGACG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	68
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	186
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	8, 97
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.