Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021955.1

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Reverse (-)

15605 .. 17703

Gene Structure 2099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021955.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgcccggcgtcactggtccttcagattactcgcgggagccgcctcgacatccgagcctcaaaatcaatgccaaggagcctttcaatgccgagccaccgcgctcagctctcggcgccgcttacgtcactccggtggagttcttctacaagagaaaccacggtcctattccagtagtcgatgacatccacagctactctgtttccataaccggattgatcgaaaatccgaagcagctgtttttgaatgatatcagggcgcttccaaagtataatgtcactgctacattgcagtgtgcaggtaataggaggacagctatgagccaaactcggactgtcaagggagtagggtgggatgtttctgcgataggaaatgctgtatggggtggtgcgaaattggctgatgtgcttgaacttgtgggaatatcaaagttgacaggtgcaactaaatctggtggaaaacatgtcgagtttgtaagcgttgataggtgtaaggaggagaatggaggcccctacaaggcatcaattccattgattcaggccacaagcccagaagcagacgttttacttgcttatgagatgaatggagaaaccctaaacagggatcatgggtatccattgcgtgtagttgtacctggtgttataggtgcccgttctgttaaatggcttgattctattaatgtcattgcagaggaatgtcagggcttctttatgcaaaaggactacaaaatgtttccaccttcagtaaactgggataacattaattggtccaccaggaggccacaaatggattttcctgtccagtgtgtaatttgttctttagaggatgtgaatgcaataaagcctggaaaggttggttctgtttgcaaactgcaatattttccatctctttatgcaattgaatatgtctattgtttactttacattatggcatatacagagacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

314

Amino Acids

34.65

Weight (kDa)

7.56

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
AccB1I	GGYRCC	2 cut(s)	113, 644
AccII	CGCG	2 cut(s)	34, 100
AciI	CCGC	4 cut(s)	34, 41, 98, 117
AclWI	GGATC	1 cut(s)	609
AcuI	CTGAAG	2 cut(s)	6, 723
AcyI	GRCGYC	2 cut(s)	9, 114
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	4 cut(s)	514, 597, 598, 774
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	85, 244, 410, 899
AjnI	CCWGG	3 cut(s)	631, 770, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AleI	CACNNNNGTG	1 cut(s)	131
AluBI	AGCT	4 cut(s)	107, 192, 235, 314
AluI	AGCT	4 cut(s)	107, 192, 235, 314
Alw26I	GTCTC	1 cut(s)	932
AlwI	GGATC	1 cut(s)	609
AoxI	GGCC	3 cut(s)	505, 537, 776
ApeKI	GCWGC	1 cut(s)	232
AseI	ATTAAT	2 cut(s)	675, 759
AspLEI	GCGC	3 cut(s)	102, 116, 259
AspS9I	GGNCC	4 cut(s)	17, 161, 506, 765
AsuC2I	CCSGG	1 cut(s)	6
AvaII	GGWCC	3 cut(s)	17, 161, 765
BaeGI	GKGCMC	1 cut(s)	649
BanI	GGYRCC	2 cut(s)	113, 644
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	889
BciT130I	CCWGG	3 cut(s)	633, 772, 843
BciVI	GTATCC	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	932
BfoI	RGCGCY	2 cut(s)	117, 260
BfuAI	ACCTGC	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	621
BisI	GCNGC	3 cut(s)	41, 117, 233
BlpI	GCTNAGC	1 cut(s)	103
BlsI	GCNGC	3 cut(s)	42, 118, 234
Bme1390I	CCNGG	4 cut(s)	6, 633, 772, 843
Bme18I	GGWCC	3 cut(s)	17, 161, 765
BmgT120I	GGNCC	4 cut(s)	17, 161, 506, 765
BmiI	GGNNCC	5 cut(s)	39, 78, 115, 508, 646
BmrFI	CCNGG	4 cut(s)	6, 633, 772, 843
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	1 cut(s)	527
BmuI	ACTGGG	1 cut(s)	757
BplI	GAGNNNNNCTC	2 cut(s)	310, 342
Bpu1102I	GCTNAGC	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	6
BsaHI	GRCGYC	2 cut(s)	9, 114
BsaI	GGTCTC	1 cut(s)	932
BsaJI	CCNNGG	2 cut(s)	72, 157
BsaWI	WCCGGW	2 cut(s)	130, 209
Bsc4I	CCNNNNNNNGG	4 cut(s)	514, 597, 598, 774
Bse1I	ACTGG	4 cut(s)	19, 170, 752, 799
Bse3DI	GCAATG	3 cut(s)	284, 614, 681
BseBI	CCWGG	3 cut(s)	633, 772, 843
BseDI	CCNNGG	2 cut(s)	72, 157
BseGI	GGATG	4 cut(s)	49, 183, 358, 829
BseLI	CCNNNNNNNGG	4 cut(s)	514, 597, 598, 774
BseMI	GCAATG	3 cut(s)	284, 614, 681
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	4 cut(s)	19, 170, 752, 799
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	2 cut(s)	34, 100
BshFI	GGCC	3 cut(s)	507, 539, 778
BshNI	GGYRCC	2 cut(s)	113, 644
BsiSI	CCGG	3 cut(s)	6, 131, 210
BslI	CCNNNNNNNGG	4 cut(s)	514, 597, 598, 774
BsmAI	GTCTC	1 cut(s)	932
BsmI	GAATGC	1 cut(s)	835
BsnI	GGCC	3 cut(s)	507, 539, 778
Bso31I	GGTCTC	1 cut(s)	932
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp143I	GATC	2 cut(s)	216, 601
Bsp1720I	GCTNAGC	1 cut(s)	103
BspACI	CCGC	4 cut(s)	34, 41, 98, 117
BspANI	GGCC	3 cut(s)	507, 539, 778
BspCNI	CTCAG	1 cut(s)	116
BspFNI	CGCG	2 cut(s)	34, 100
BspLI	GGNNCC	5 cut(s)	39, 78, 115, 508, 646
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	609
BspT107I	GGYRCC	2 cut(s)	113, 644
BspTNI	GGTCTC	1 cut(s)	932
BsrDI	GCAATG	3 cut(s)	284, 614, 681
BsrI	ACTGG	4 cut(s)	19, 170, 752, 799
BssECI	CCNNGG	2 cut(s)	72, 157
BssMI	GATC	2 cut(s)	216, 601
BssNI	GRCGYC	2 cut(s)	9, 114
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	3 cut(s)	633, 772, 843
Bst4CI	ACNGT	2 cut(s)	161, 334
BstACI	GRCGYC	2 cut(s)	9, 114
BstDEI	CTNAG	1 cut(s)	103
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	4 cut(s)	49, 183, 358, 829
BstFNI	CGCG	2 cut(s)	34, 100
BstH2I	RGCGCY	2 cut(s)	117, 260
BstHHI	GCGC	3 cut(s)	102, 116, 259
BstKTI	GATC	2 cut(s)	219, 604
BstMAI	GTCTC	1 cut(s)	932
BstMBI	GATC	2 cut(s)	216, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 113, 395
BstNI	CCWGG	3 cut(s)	633, 772, 843
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	4 cut(s)	4, 631, 770, 841
BstSLI	GKGCMC	1 cut(s)	649
BstUI	CGCG	2 cut(s)	34, 100
BstV1I	GCAGC	1 cut(s)	244
BsuI	GTATCC	1 cut(s)	621
BsuRI	GGCC	3 cut(s)	507, 539, 778
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	4 cut(s)	49, 183, 358, 829
BtsI	GCAGTG	2 cut(s)	276, 296
BtsIMutI	CAGTG	4 cut(s)	12, 276, 296, 806
BveI	ACCTGC	1 cut(s)	287
CfoI	GCGC	3 cut(s)	102, 116, 259
Cfr13I	GGNCC	4 cut(s)	17, 161, 506, 765
CsiI	ACCWGGT	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	2 cut(s)	461, 605
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	1 cut(s)	103
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	2 cut(s)	218, 603
DpnII	GATC	2 cut(s)	216, 601
Eco130I	CCWWGG	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	932
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	3 cut(s)	17, 161, 765
Eco57I	CTGAAG	2 cut(s)	6, 723
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRII	CCWGG	3 cut(s)	631, 770, 841
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	72
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	464, 608
FatI	CATG	2 cut(s)	460, 604
FauI	CCCGC	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	41, 117, 233
FokI	GGATG	4 cut(s)	36, 170, 365, 836
Fsp4HI	GCNGC	3 cut(s)	41, 117, 233
GlaI	GCGC	3 cut(s)	101, 115, 258
GluI	GCNGC	3 cut(s)	41, 117, 233
HaeII	RGCGCY	2 cut(s)	117, 260
HaeIII	GGCC	3 cut(s)	507, 539, 778
HapII	CCGG	3 cut(s)	6, 131, 210
HhaI	GCGC	3 cut(s)	102, 116, 259
Hin1I	GRCGYC	2 cut(s)	9, 114
Hin1II	CATG	2 cut(s)	464, 608
Hin6I	GCGC	3 cut(s)	100, 114, 257
HinP1I	GCGC	3 cut(s)	100, 114, 257
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	532, 668
HpaII	CCGG	3 cut(s)	6, 131, 210
Hpy166II	GTNNAC	4 cut(s)	432, 745, 768, 914
Hpy188I	TCNGA	4 cut(s)	25, 54, 228, 330
Hpy8I	GTNNAC	4 cut(s)	432, 745, 768, 914
HpyAV	CCTTC	2 cut(s)	30, 747
HpyCH4III	ACNGT	2 cut(s)	161, 334
HpyCH4IV	ACGT	2 cut(s)	123, 558
HpyCH4V	TGCA	9 cut(s)	289, 296, 440, 686, 712, 833, 864, 871, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 113, 395
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	2 cut(s)	123, 558
Hsp92I	GRCGYC	2 cut(s)	9, 114
Hsp92II	CATG	2 cut(s)	464, 608
HspAI	GCGC	3 cut(s)	100, 114, 257
KasI	GGCGCC	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	216, 601
LmnI	GCTCC	2 cut(s)	37, 76
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	527
MabI	ACCWGGT	1 cut(s)	631
MaeII	ACGT	2 cut(s)	123, 558
MaeIII	GTNAC	3 cut(s)	10, 124, 274
MalI	GATC	2 cut(s)	218, 603
MboI	GATC	2 cut(s)	216, 601
MboII	GAAGA	1 cut(s)	133
MfeI	CAATTG	1 cut(s)	894
MhlI	GDGCHC	1 cut(s)	649
MluCI	AATT	5 cut(s)	392, 522, 760, 807, 894
Mly113I	GGCGCC	1 cut(s)	114
MnlI	CCTC	8 cut(s)	54, 68, 300, 487, 497, 682, 768, 814
MseI	TTAA	3 cut(s)	657, 675, 759
MslI	CAYNNNNRTG	2 cut(s)	131, 289
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	3 cut(s)	6, 131, 210
MspR9I	CCNGG	4 cut(s)	6, 633, 772, 843
MunI	CAATTG	1 cut(s)	894
Mva1269I	GAATGC	1 cut(s)	835
MvaI	CCWGG	3 cut(s)	633, 772, 843
MvnI	CGCG	2 cut(s)	34, 100
MwoI	GCNNNNNNNGC	3 cut(s)	40, 113, 395
NarI	GGCGCC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	216, 601
NlaIII	CATG	2 cut(s)	464, 608
NlaIV	GGNNCC	5 cut(s)	39, 78, 115, 508, 646
NmeAIII	GCCGAG	2 cut(s)	90, 115
NmuCI	GTSAC	3 cut(s)	10, 124, 274
NspI	RCATGY	1 cut(s)	464
OliI	CACNNNNGTG	1 cut(s)	131
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	835
PfeI	GAWTC	2 cut(s)	532, 668
PkrI	GCNGC	3 cut(s)	42, 118, 234
PluTI	GGCGCC	1 cut(s)	117
PscI	ACATGT	1 cut(s)	460
PshBI	ATTAAT	2 cut(s)	675, 759
Psp6I	CCWGG	3 cut(s)	631, 770, 841
PspGI	CCWGG	3 cut(s)	631, 770, 841
PspN4I	GGNNCC	5 cut(s)	39, 78, 115, 508, 646
PspPI	GGNCC	4 cut(s)	17, 161, 506, 765
PvuII	CAGCTG	1 cut(s)	235
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
RseI	CAYNNNNRTG	2 cut(s)	131, 289
SaqAI	TTAA	3 cut(s)	657, 675, 759
SatI	GCNGC	3 cut(s)	41, 117, 233
Sau3AI	GATC	2 cut(s)	216, 601
Sau96I	GGNCC	4 cut(s)	17, 161, 506, 765
ScrFI	CCNGG	4 cut(s)	6, 633, 772, 843
SduI	GDGCHC	1 cut(s)	649
SexAI	ACCWGGT	1 cut(s)	631
SfaNI	GCATC	1 cut(s)	527
SfoI	GGCGCC	1 cut(s)	115
SinI	GGWCC	3 cut(s)	17, 161, 765
SmiMI	CAYNNNNRTG	2 cut(s)	131, 289
Sse9I	AATT	5 cut(s)	392, 522, 760, 807, 894
SsiI	CCGC	4 cut(s)	34, 41, 98, 117
SspDI	GGCGCC	1 cut(s)	113
SspI	AATATT	1 cut(s)	875
StyD4I	CCNGG	4 cut(s)	4, 631, 770, 841
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	161, 334
TaiI	ACGT	2 cut(s)	126, 561
TaqI	TCGA	4 cut(s)	46, 177, 219, 465
TasI	AATT	5 cut(s)	392, 522, 760, 807, 894
TauI	GCSGC	2 cut(s)	43, 119
TfiI	GAWTC	2 cut(s)	532, 668
Tru1I	TTAA	3 cut(s)	657, 675, 759
Tru9I	TTAA	3 cut(s)	657, 675, 759
TscAI	CASTG	4 cut(s)	19, 283, 296, 806
TseFI	GTSAC	3 cut(s)	10, 124, 274
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	3 cut(s)	10, 124, 274
TspDTI	ATGAA	1 cut(s)	593
TspRI	CASTG	4 cut(s)	19, 283, 296, 806
VpaK11BI	GGWCC	3 cut(s)	17, 161, 765
VspI	ATTAAT	2 cut(s)	675, 759
XceI	RCATGY	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.