RchiOBHm_Chr4g0430531

Sulfite oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002104
Physical Location & Seq
Forward (+)
55062724 .. 55063912
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39925

Sequence Viewer

Length: 603 bp
ATGAATGGACAGCCTCTAAACAGGGATCATGGCTATCCTCTGTGTGTAATTGTTCCTGGTGTGATTGGTTCTCGATCTGTAAAATGGCTTAGTTCCATCAATATTATTGAAAATGAATGCCAGGGATTTTTTACGCAAAGGGACTGTAAAATGTTTCCTCCTGCAGTAAACTGGGAAAATATAGAATGGTCAACTAGAAGGCCTCAGATGGATTTTCCAGTTCAGTCTGTGATTTTCTTTGGAGGAAGAAAATACAGTAGAGCCTGGAAAGTTCATGGATATGCAGTGTCTGGAGGCGGTCGGGGGATTGAGCGAGTAGATGTATCTTTCGATGGAGGCAAGACATGGGAGGAAGCAATCAGATACCAGAAGAGTACTGAAGTCCCATACGTTGCTGATGATACAAGTAGTGGTGACAAGTGCGCATGGGTGCTGTTTAAGGCTGAAGCAGATCTCTCTCACAATACTGAAATCGTCACCAAAGCAGTTGATATAGCTGGAAATGTCCAACCCGAAAATGTGGGTGTCATCTGGAACCTGAGAGGAATACAAAACACGTCTTGGCACAGGGTCCGTGTTGAAGTCGAGGACCCTAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 ko01100 ko01120 map00920 map01100 map01120
Pfam Domains
Protein Families
Mo-co_dimer Oxidored_molyb

Protein Analysis

200

Amino Acids

22.59

Weight (kDa)

6.1

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_molyb PF00174 1 - 43 4.3e-14 Oxidoreductase molybdopterin binding domain
Mo-co_dimer PF03404 70 - 195 3.6e-30 Mo-co oxidoreductase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 424
AciI CCGC 1 cut(s) 297
AclWI GGATC 1 cut(s) 33
AcuI CTGAAG 2 cut(s) 399, 465
AfaI GTAC 1 cut(s) 376
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 2 cut(s) 110, 581
AjiI CACGTC 1 cut(s) 558
AjnI CCWGG 3 cut(s) 55, 120, 263
AluBI AGCT 1 cut(s) 497
AluI AGCT 1 cut(s) 497
AlwI GGATC 1 cut(s) 33
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 571, 589
AsuHPI GGTGA 2 cut(s) 425, 469
AvaII GGWCC 2 cut(s) 571, 589
BccI CCATC 3 cut(s) 104, 202, 326
BciT130I CCWGG 3 cut(s) 57, 122, 265
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 162
BglII AGATCT 1 cut(s) 451
BmcAI AGTACT 1 cut(s) 376
Bme1390I CCNGG 3 cut(s) 57, 122, 265
Bme18I GGWCC 2 cut(s) 571, 589
BmgBI CACGTC 1 cut(s) 558
BmgT120I GGNCC 2 cut(s) 571, 589
BmiI GGNNCC 3 cut(s) 536, 572, 591
BmrFI CCNGG 3 cut(s) 57, 122, 265
BmrI ACTGGG 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 121
Bse1I ACTGG 2 cut(s) 176, 218
BseBI CCWGG 3 cut(s) 57, 122, 265
BseDI CCNNGG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 218, 530
BseNI ACTGG 2 cut(s) 176, 218
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 1 cut(s) 202
BsiEI CGRYCG 1 cut(s) 301
BslFI GGGAC 2 cut(s) 155, 368
BsmFI GGGAC 2 cut(s) 155, 368
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 1 cut(s) 202
Bsp143I GATC 3 cut(s) 25, 74, 451
BspACI CCGC 1 cut(s) 297
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 2 cut(s) 217, 531
BspLI GGNNCC 3 cut(s) 536, 572, 591
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 33
BsrI ACTGG 2 cut(s) 176, 218
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 3 cut(s) 25, 74, 451
Bst2UI CCWGG 3 cut(s) 57, 122, 265
Bst4CI ACNGT 2 cut(s) 146, 257
Bst6I CTCTTC 1 cut(s) 365
BstDEI CTNAG 3 cut(s) 89, 204, 539
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 3 cut(s) 28, 77, 454
BstMBI GATC 3 cut(s) 25, 74, 451
BstMCI CGRYCG 1 cut(s) 301
BstNI CCWGG 3 cut(s) 57, 122, 265
BstSCI CCNGG 3 cut(s) 55, 120, 263
BstSFI CTRYAG 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 1 cut(s) 202
BtrI CACGTC 1 cut(s) 558
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
CaiI CAGNNNCTG 1 cut(s) 290
CfoI GCGC 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 571, 589
Csp6I GTAC 1 cut(s) 375
CviAII CATG 4 cut(s) 29, 275, 345, 426
CviJI RGCY 7 cut(s) 13, 33, 88, 202, 263, 443, 497
CviKI_1 RGCY 7 cut(s) 13, 33, 88, 202, 263, 443, 497
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 3 cut(s) 89, 204, 539
DpnI GATC 3 cut(s) 27, 76, 453
DpnII GATC 3 cut(s) 25, 74, 451
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
Eco147I AGGCCT 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 571, 589
Eco57I CTGAAG 2 cut(s) 399, 465
EcoO109I RGGNCCY 1 cut(s) 589
EcoRII CCWGG 3 cut(s) 55, 120, 263
FaeI CATG 4 cut(s) 32, 278, 348, 429
FaiI YATR 8 cut(s) 30, 182, 276, 282, 346, 388, 427, 494
FaqI GGGAC 2 cut(s) 155, 368
FatI CATG 4 cut(s) 28, 274, 344, 425
FspAI RTGCGCAY 1 cut(s) 424
FspBI CTAG 1 cut(s) 195
FspI TGCGCA 1 cut(s) 424
GlaI GCGC 1 cut(s) 424
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 202
HhaI GCGC 1 cut(s) 425
Hin1II CATG 4 cut(s) 32, 278, 348, 429
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HphI GGTGA 2 cut(s) 425, 469
Hpy166II GTNNAC 2 cut(s) 169, 192
Hpy188I TCNGA 3 cut(s) 207, 362, 602
Hpy188III TCNNGA 3 cut(s) 72, 291, 532
Hpy8I GTNNAC 2 cut(s) 169, 192
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 146, 257
HpyCH4IV ACGT 2 cut(s) 390, 557
HpyCH4V TGCA 2 cut(s) 164, 284
HpyF3I CTNAG 3 cut(s) 89, 204, 539
HpySE526I ACGT 2 cut(s) 390, 557
Hsp92II CATG 4 cut(s) 32, 278, 348, 429
HspAI GCGC 1 cut(s) 423
Kzo9I GATC 3 cut(s) 25, 74, 451
MaeI CTAG 1 cut(s) 195
MaeII ACGT 2 cut(s) 390, 557
MaeIII GTNAC 2 cut(s) 413, 475
MalI GATC 3 cut(s) 27, 76, 453
MboI GATC 3 cut(s) 25, 74, 451
MboII GAAGA 2 cut(s) 258, 382
MflI RGATCY 1 cut(s) 451
MluCI AATT 2 cut(s) 48, 595
MmeI TCCRAC 1 cut(s) 532
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 1 cut(s) 279
MspR9I CCNGG 3 cut(s) 57, 122, 265
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 3 cut(s) 57, 122, 265
NdeII GATC 3 cut(s) 25, 74, 451
NlaIII CATG 4 cut(s) 32, 278, 348, 429
NlaIV GGNNCC 3 cut(s) 536, 572, 591
NmuCI GTSAC 2 cut(s) 413, 475
NsbI TGCGCA 1 cut(s) 424
PceI AGGCCT 1 cut(s) 202
PctI GAATGC 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 589
Psp5II RGGWCCY 1 cut(s) 589
Psp6I CCWGG 3 cut(s) 55, 120, 263
PspGI CCWGG 3 cut(s) 55, 120, 263
PspN4I GGNNCC 3 cut(s) 536, 572, 591
PspPI GGNCC 2 cut(s) 571, 589
PspPPI RGGWCCY 1 cut(s) 589
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 438
Sau3AI GATC 3 cut(s) 25, 74, 451
Sau96I GGNCC 2 cut(s) 571, 589
ScaI AGTACT 1 cut(s) 376
ScrFI CCNGG 3 cut(s) 57, 122, 265
SetI ASST 4 cut(s) 393, 499, 540, 560
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 2 cut(s) 571, 589
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 2 cut(s) 48, 595
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 1 cut(s) 297
SspI AATATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 195
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 3 cut(s) 55, 120, 263
TaaI ACNGT 2 cut(s) 146, 257
TaiI ACGT 2 cut(s) 393, 560
TaqI TCGA 3 cut(s) 73, 330, 585
TasI AATT 2 cut(s) 48, 595
TatI WGTACW 1 cut(s) 374
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 2 cut(s) 413, 475
Tsp45I GTSAC 2 cut(s) 413, 475
TspDTI ATGAA 3 cut(s) 17, 129, 263
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 1 cut(s) 291
VpaK11BI GGWCC 2 cut(s) 571, 589
XspI CTAG 1 cut(s) 195
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.