Rw2G054490

Sulfite oxidase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
82123476 .. 82127404
3929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G054490.1

Sequence Viewer

Length: 1119 bp
ATGCCCGGCGTCACTGGTCCTTCAGATTACTCGCGGGAGCCGCCTCGACATCCGAGCCTCAAAATCAATGCCAAGGAGCCTTTCAACGCCGAGCCACCGCGCTCAGCTCTCGGCGCCGCTTACGTCACTCCGGTGGAGTTCTTCTACAAGAGAAACCACGGTCCTATTCCAGTAGTCGATGACGTCCACAGCTACTCTGTTTCCATAACCGGATTGATCGAAAATCCGAAGCAGCTGTTTTTGAATGATATCAAGGCGCTTCCAAAGTATAATGTCACTGCTACATTGCAGTGTGCAGGTAATAGGAGGACAGCTATGAGCCAAACTCGGACTGTCAAGGGAGTAGGGTGGGATGTTTCTGCGATAGGAAATGGTGCAACTAAATCTGGTGGAAAACATGTCGAGTTTGTAAGCGTTGATAGGTGTAAGGAGGAGAATGGAGGCCCCTACAAGGCATCAATTCCATTGATTCAGGCCACAAGCCCAGAAGCAGACGTTTTACTTGCTTATGAGATGAATGGAGAGACCCTAAACAGGGATCATGGGTATCCATTGCGTGTAGTTGTACCTGGTGTTATAGGTGCCCGTTCTGTTAAATGGCTTGATTCTATTAATGTCATTGCAGAGGAATGTCAGGGCTTCTTTATGCAAAAGGACTACAAAATGTTTCCACCTTCAGTAAACTGGGATAACATTAATTGGTCCACCAGGAGGCCACAAATGGATTTTCCTGTCCAGTGTGTAATTTGTTCTTTAGAGGATGTGAATGCAATAAAGCCTGGAAAGGTAAAAGTCAGTGGTTATGCAGCATCAGGAGGTGGTCGTGGCATTGAGAGAGTTGATGTGTCTGTTGATGGTGGCAATACCTGGGTAGAAGCATCTAGACATCAGAAAACTGGCATCCCATATATTGCAGAGGCCACATGCAGCGATAAATGGGCATGGGTACTTTTTGAGGCCATGGTTGATGTCCAACAGAGCACTCAAATTGTTGCAAAAGCAGTGGATTCAGCAGCAAATGTACAACCTGAAAAAGTGGAGGACATTTGGAACTTGAGAGGGATACTGAACACTTCATGGCATAGAGTACAAGTTCGAGTTGGCCACTCAAATTTGTAG

Protein Analysis

372

Amino Acids

40.85

Weight (kDa)

7.63

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_molyb PF00174 53 - 214 3.1e-43 Oxidoreductase molybdopterin binding domain
Mo-co_dimer PF03404 239 - 367 1.8e-37 Mo-co oxidoreductase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 287
AccB1I GGYRCC 2 cut(s) 113, 581
AccII CGCG 2 cut(s) 34, 100
AciI CCGC 4 cut(s) 34, 41, 98, 117
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 1102
AcsI RAATTY 1 cut(s) 1111
AcuI CTGAAG 2 cut(s) 6, 660
AcyI GRCGYC 3 cut(s) 9, 114, 183
AfaI GTAC 4 cut(s) 567, 948, 1023, 1089
AfiI CCNNNNNNNGG 4 cut(s) 451, 534, 535, 711
AflIII ACRYGT 1 cut(s) 397
AgsI TTSAA 2 cut(s) 85, 244
AjnI CCWGG 4 cut(s) 568, 707, 778, 866
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 4 cut(s) 107, 192, 235, 314
AluI AGCT 4 cut(s) 107, 192, 235, 314
Alw21I GWGCWC 1 cut(s) 983
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 1 cut(s) 546
AoxI GGCC 6 cut(s) 442, 474, 713, 918, 957, 1102
ApeKI GCWGC 4 cut(s) 232, 806, 927, 1013
ApoI RAATTY 1 cut(s) 1111
AseI ATTAAT 2 cut(s) 612, 696
AspLEI GCGC 3 cut(s) 102, 116, 259
AspS9I GGNCC 4 cut(s) 17, 161, 443, 702
AsuC2I CCSGG 1 cut(s) 6
AvaII GGWCC 3 cut(s) 17, 161, 702
BaeGI GKGCMC 1 cut(s) 586
BalI TGGCCA 1 cut(s) 1104
BanI GGYRCC 2 cut(s) 113, 581
Bbv12I GWGCWC 1 cut(s) 983
BbvI GCAGC 4 cut(s) 244, 818, 939, 1025
BccI CCATC 1 cut(s) 848
BciT130I CCWGG 4 cut(s) 570, 709, 780, 868
BciVI GTATCC 2 cut(s) 558, 1056
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 882
BfoI RGCGCY 2 cut(s) 117, 260
BfuAI ACCTGC 1 cut(s) 287
BfuI GTATCC 2 cut(s) 558, 1056
BisI GCNGC 6 cut(s) 41, 117, 233, 807, 928, 1014
BlpI GCTNAGC 1 cut(s) 103
BlsI GCNGC 6 cut(s) 42, 118, 234, 808, 929, 1015
Bme1390I CCNGG 5 cut(s) 6, 570, 709, 780, 868
Bme18I GGWCC 3 cut(s) 17, 161, 702
BmgT120I GGNCC 4 cut(s) 17, 161, 443, 702
BmiI GGNNCC 5 cut(s) 39, 78, 115, 445, 583
BmrFI CCNGG 5 cut(s) 6, 570, 709, 780, 868
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 4 cut(s) 464, 818, 887, 909
BmuI ACTGGG 1 cut(s) 694
BplI GAGNNNNNCTC 2 cut(s) 310, 342
Bpu1102I GCTNAGC 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 1075
BpuMI CCSGG 1 cut(s) 6
BsaHI GRCGYC 3 cut(s) 9, 114, 183
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 4 cut(s) 72, 157, 867, 960
BsaWI WCCGGW 2 cut(s) 130, 209
Bsc4I CCNNNNNNNGG 4 cut(s) 451, 534, 535, 711
Bse1I ACTGG 5 cut(s) 19, 170, 689, 736, 901
Bse3DI GCAATG 3 cut(s) 284, 551, 618
BseBI CCWGG 4 cut(s) 570, 709, 780, 868
BseDI CCNNGG 4 cut(s) 72, 157, 867, 960
BseGI GGATG 4 cut(s) 49, 358, 766, 900
BseLI CCNNNNNNNGG 4 cut(s) 451, 534, 535, 711
BseMI GCAATG 3 cut(s) 284, 551, 618
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 5 cut(s) 19, 170, 689, 736, 901
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 4 cut(s) 244, 818, 939, 1025
BsgI GTGCAG 1 cut(s) 315
Bsh1236I CGCG 2 cut(s) 34, 100
BshFI GGCC 6 cut(s) 444, 476, 715, 920, 959, 1104
BshNI GGYRCC 2 cut(s) 113, 581
BsiHKAI GWGCWC 1 cut(s) 983
BsiSI CCGG 3 cut(s) 6, 131, 210
BslI CCNNNNNNNGG 4 cut(s) 451, 534, 535, 711
BsmAI GTCTC 1 cut(s) 518
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 6 cut(s) 444, 476, 715, 920, 959, 1104
Bso31I GGTCTC 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 586, 983
Bsp1407I TGTACA 1 cut(s) 1021
Bsp143I GATC 2 cut(s) 216, 538
Bsp1720I GCTNAGC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 960
BspACI CCGC 4 cut(s) 34, 41, 98, 117
BspANI GGCC 6 cut(s) 444, 476, 715, 920, 959, 1104
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 2 cut(s) 34, 100
BspLI GGNNCC 5 cut(s) 39, 78, 115, 445, 583
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 546
BspT107I GGYRCC 2 cut(s) 113, 581
BspTNI GGTCTC 1 cut(s) 518
BsrDI GCAATG 3 cut(s) 284, 551, 618
BsrGI TGTACA 1 cut(s) 1021
BsrI ACTGG 5 cut(s) 19, 170, 689, 736, 901
BssECI CCNNGG 4 cut(s) 72, 157, 867, 960
BssMI GATC 2 cut(s) 216, 538
BssNI GRCGYC 3 cut(s) 9, 114, 183
BssT1I CCWWGG 2 cut(s) 72, 960
Bst2UI CCWGG 4 cut(s) 570, 709, 780, 868
Bst4CI ACNGT 2 cut(s) 161, 334
BstACI GRCGYC 3 cut(s) 9, 114, 183
BstAUI TGTACA 1 cut(s) 1021
BstDEI CTNAG 1 cut(s) 103
BstDSI CCRYGG 2 cut(s) 157, 960
BstF5I GGATG 4 cut(s) 49, 358, 766, 900
BstFNI CGCG 2 cut(s) 34, 100
BstH2I RGCGCY 2 cut(s) 117, 260
BstHHI GCGC 3 cut(s) 102, 116, 259
BstKTI GATC 2 cut(s) 219, 541
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 2 cut(s) 216, 538
BstMWI GCNNNNNNNGC 2 cut(s) 40, 113
BstNI CCWGG 4 cut(s) 570, 709, 780, 868
BstNSI RCATGY 2 cut(s) 401, 927
BstSCI CCNGG 5 cut(s) 4, 568, 707, 778, 866
BstSLI GKGCMC 1 cut(s) 586
BstUI CGCG 2 cut(s) 34, 100
BstV1I GCAGC 4 cut(s) 244, 818, 939, 1025
BsuI GTATCC 2 cut(s) 558, 1056
BsuRI GGCC 6 cut(s) 444, 476, 715, 920, 959, 1104
BtgI CCRYGG 2 cut(s) 157, 960
BtsCI GGATG 4 cut(s) 49, 358, 766, 900
BtsI GCAGTG 3 cut(s) 276, 296, 1008
BtsIMutI CAGTG 6 cut(s) 12, 276, 296, 743, 802, 1008
BveI ACCTGC 1 cut(s) 287
CfoI GCGC 3 cut(s) 102, 116, 259
Cfr13I GGNCC 4 cut(s) 17, 161, 443, 702
CsiI ACCWGGT 1 cut(s) 568
Csp6I GTAC 4 cut(s) 566, 947, 1022, 1088
CspCI CAANNNNNGTGG 2 cut(s) 984, 1019
CviAII CATG 6 cut(s) 398, 542, 924, 942, 961, 1077
CviQI GTAC 4 cut(s) 566, 947, 1022, 1088
DdeI CTNAG 1 cut(s) 103
DinI GGCGCC 1 cut(s) 115
DpnI GATC 2 cut(s) 218, 540
DpnII GATC 2 cut(s) 216, 538
EaeI YGGCCR 1 cut(s) 1102
Eco130I CCWWGG 2 cut(s) 72, 960
Eco31I GGTCTC 1 cut(s) 518
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 3 cut(s) 17, 161, 702
Eco57I CTGAAG 2 cut(s) 6, 660
EcoO109I RGGNCCY 1 cut(s) 443
EcoRII CCWGG 4 cut(s) 568, 707, 778, 866
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 72, 960
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 2 cut(s) 72, 960
FaeI CATG 6 cut(s) 401, 545, 927, 945, 964, 1080
FatI CATG 6 cut(s) 397, 541, 923, 941, 960, 1076
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 6 cut(s) 41, 117, 233, 807, 928, 1014
FokI GGATG 4 cut(s) 36, 365, 773, 887
Fsp4HI GCNGC 6 cut(s) 41, 117, 233, 807, 928, 1014
FspBI CTAG 1 cut(s) 882
GlaI GCGC 3 cut(s) 101, 115, 258
GluI GCNGC 6 cut(s) 41, 117, 233, 807, 928, 1014
HaeII RGCGCY 2 cut(s) 117, 260
HaeIII GGCC 6 cut(s) 444, 476, 715, 920, 959, 1104
HapII CCGG 3 cut(s) 6, 131, 210
HhaI GCGC 3 cut(s) 102, 116, 259
Hin1I GRCGYC 3 cut(s) 9, 114, 183
Hin1II CATG 6 cut(s) 401, 545, 927, 945, 964, 1080
Hin6I GCGC 3 cut(s) 100, 114, 257
HinP1I GCGC 3 cut(s) 100, 114, 257
HinfI GANTC 3 cut(s) 469, 605, 1007
HpaII CCGG 3 cut(s) 6, 131, 210
Hpy166II GTNNAC 3 cut(s) 187, 682, 705
Hpy188I TCNGA 5 cut(s) 25, 54, 228, 330, 891
Hpy188III TCNNGA 2 cut(s) 813, 882
Hpy8I GTNNAC 3 cut(s) 187, 682, 705
HpyAV CCTTC 2 cut(s) 30, 684
HpyCH4III ACNGT 2 cut(s) 161, 334
HpyCH4IV ACGT 3 cut(s) 123, 183, 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 113
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 3 cut(s) 123, 183, 495
Hsp92I GRCGYC 3 cut(s) 9, 114, 183
Hsp92II CATG 6 cut(s) 401, 545, 927, 945, 964, 1080
HspAI GCGC 3 cut(s) 100, 114, 257
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 2 cut(s) 216, 538
LmnI GCTCC 2 cut(s) 37, 76
Lsp1109I GCAGC 4 cut(s) 244, 818, 939, 1025
LweI GCATC 4 cut(s) 464, 818, 887, 909
MabI ACCWGGT 1 cut(s) 568
MaeI CTAG 1 cut(s) 882
MaeII ACGT 3 cut(s) 123, 183, 495
MaeIII GTNAC 3 cut(s) 10, 124, 274
MalI GATC 2 cut(s) 218, 540
MboI GATC 2 cut(s) 216, 538
MboII GAAGA 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 586, 983
MlsI TGGCCA 1 cut(s) 1104
MluCI AATT 5 cut(s) 459, 697, 744, 987, 1111
MluNI TGGCCA 1 cut(s) 1104
Mly113I GGCGCC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 997
Mox20I TGGCCA 1 cut(s) 1104
MscI TGGCCA 1 cut(s) 1104
MseI TTAA 3 cut(s) 594, 612, 696
MslI CAYNNNNRTG 2 cut(s) 131, 289
Msp20I TGGCCA 1 cut(s) 1104
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 3 cut(s) 6, 131, 210
MspR9I CCNGG 5 cut(s) 6, 570, 709, 780, 868
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 4 cut(s) 570, 709, 780, 868
MvnI CGCG 2 cut(s) 34, 100
MwoI GCNNNNNNNGC 2 cut(s) 40, 113
NarI GGCGCC 1 cut(s) 114
NciI CCSGG 1 cut(s) 6
NcoI CCATGG 1 cut(s) 960
NdeII GATC 2 cut(s) 216, 538
NlaIII CATG 6 cut(s) 401, 545, 927, 945, 964, 1080
NlaIV GGNNCC 5 cut(s) 39, 78, 115, 445, 583
NmeAIII GCCGAG 2 cut(s) 90, 115
NmuCI GTSAC 3 cut(s) 10, 124, 274
NspI RCATGY 2 cut(s) 401, 927
OliI CACNNNNGTG 1 cut(s) 131
PciI ACATGT 1 cut(s) 397
PctI GAATGC 1 cut(s) 772
PfeI GAWTC 3 cut(s) 469, 605, 1007
PkrI GCNGC 6 cut(s) 42, 118, 234, 808, 929, 1015
PluTI GGCGCC 1 cut(s) 117
PscI ACATGT 1 cut(s) 397
PshBI ATTAAT 2 cut(s) 612, 696
Psp6I CCWGG 4 cut(s) 568, 707, 778, 866
PspGI CCWGG 4 cut(s) 568, 707, 778, 866
PspN4I GGNNCC 5 cut(s) 39, 78, 115, 445, 583
PspPI GGNCC 4 cut(s) 17, 161, 443, 702
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 4 cut(s) 567, 948, 1023, 1089
RsaNI GTAC 4 cut(s) 566, 947, 1022, 1088
RseI CAYNNNNRTG 2 cut(s) 131, 289
SaqAI TTAA 3 cut(s) 594, 612, 696
SatI GCNGC 6 cut(s) 41, 117, 233, 807, 928, 1014
Sau3AI GATC 2 cut(s) 216, 538
Sau96I GGNCC 4 cut(s) 17, 161, 443, 702
ScrFI CCNGG 5 cut(s) 6, 570, 709, 780, 868
SduI GDGCHC 2 cut(s) 586, 983
SexAI ACCWGGT 1 cut(s) 568
SfaNI GCATC 4 cut(s) 464, 818, 887, 909
SfoI GGCGCC 1 cut(s) 115
SinI GGWCC 3 cut(s) 17, 161, 702
SmiMI CAYNNNNRTG 2 cut(s) 131, 289
SmlI CTYRAG 1 cut(s) 1054
SmoI CTYRAG 1 cut(s) 1054
Sse9I AATT 5 cut(s) 459, 697, 744, 987, 1111
SsiI CCGC 4 cut(s) 34, 41, 98, 117
SspDI GGCGCC 1 cut(s) 113
SspMI CTAG 1 cut(s) 882
StyD4I CCNGG 5 cut(s) 4, 568, 707, 778, 866
StyI CCWWGG 2 cut(s) 72, 960
TaaI ACNGT 2 cut(s) 161, 334
TaiI ACGT 3 cut(s) 126, 186, 498
TaqI TCGA 5 cut(s) 46, 177, 219, 402, 1096
TasI AATT 5 cut(s) 459, 697, 744, 987, 1111
TatI WGTACW 2 cut(s) 1021, 1087
TauI GCSGC 2 cut(s) 43, 119
TfiI GAWTC 3 cut(s) 469, 605, 1007
Tru1I TTAA 3 cut(s) 594, 612, 696
Tru9I TTAA 3 cut(s) 594, 612, 696
TscAI CASTG 6 cut(s) 19, 283, 296, 743, 802, 1008
TseFI GTSAC 3 cut(s) 10, 124, 274
TseI GCWGC 4 cut(s) 232, 806, 927, 1013
Tsp45I GTSAC 3 cut(s) 10, 124, 274
TspDTI ATGAA 2 cut(s) 530, 1065
TspRI CASTG 6 cut(s) 19, 283, 296, 743, 802, 1008
VpaK11BI GGWCC 3 cut(s) 17, 161, 702
VspI ATTAAT 2 cut(s) 612, 696
XapI RAATTY 1 cut(s) 1111
XbaI TCTAGA 1 cut(s) 881
XceI RCATGY 2 cut(s) 401, 927
XspI CTAG 1 cut(s) 882
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.