Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Forward (+)

24030479 .. 24044053

Gene Structure 13575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G227000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCAGGCCTAAGAGCTCCATCTAATTATACTGAGGAACCACCACGTCATCCAAGTCTCATTGTAAATTCCCAGGAACCTTTCAACGCAGAACCACCACGTTCAGCCTTAATCGCATCCTATGTGACGCCAGTAGATTTGTTCTACAAGCGAAACCATGGCCCAATCCCTGTCATTGATGACATTGAAAGATATCGAGTGTCTATACGTGGTTTGGTGGAAAAGCCCCTGGAACTATCAATGGCTGATATTAGGAAGCTACGAAGGCACATTGTGACGGCCACTTTACAATGTGCAGGTAATAGAAGGACTGCAATGAGCAAAGTAAAAGCAGTGAAAGGTGTTGGCTGGGATGTTTCTGCCATTGGAAATGCTATTTGGGGTGGGGCCAAACTTGCTGATGTTCTTGAACTTGTGGGGATCTCTAAGTTAACATCAGTGTCCCCATTAGGAGGAAAGCATGTTGAGTTCGTAAGTGTTGACATGTGCAAGGAGGAAAAAGGAGGACCGTACAAGGGATCAATTCCGTTAATTCAGGCAACAAACTCAGATGCTGAGGTTTTACTTGCATATGAGATGAATGGAGAGCCTCTAAACAGGGATCACGGGTATCCTCTTCGCGTAATTGTTCCTGGTGTTATAGGTGCTCGTTCTGTTAAATGGCTGAGTTCCATCAATATAATTGAAAATGAGTGTCAGGGATTCTTTATGCAAAGGGACTACAAAATGTTTCCTCCTACTGTGAACTGGGAAAATATTGATTGGTCAACCCGGAGGCCTCAAATGGATTTTCCTGTTCAGTCTGTTATTTGTTCTTTGGAGGAAGAAAATACAGTGAAGCCTGGAAAGATAGTAGTTCATGGATATGCAGCATCTGGAGGTGGGCGGGGGATCGAAAGAGTAGATGTATCTTTTGATGGTGGCAAGACATGGGTGGAAGCAATCAGATACCAAAAGAGTGGAATTCCATATGTTGCAGATGATACAAGTAGTGACAAGTGGGCATGGGTGCTATTTAAGGCTGAGGCAGATGTCTCTCACACTACTGAAATTTTCACTAAAGCTGTTGATATATCTGCGAACGTCCAACCCGAAAATGTGGAGGTCATCTGGAACCTGAGAGGAATTCTCAACACTTCCTGGCACAGGGTCCATATTCACGTCCAACACCCTGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

394

Amino Acids

43.69

Weight (kDa)

6.61

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
AccII	CGCG	1 cut(s)	621
AciI	CCGC	1 cut(s)	886
AclWI	GGATC	4 cut(s)	428, 526, 609, 899
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	4 cut(s)	67, 963, 1050, 1125
AcyI	GRCGYC	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	274
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	3 cut(s)	452, 515, 1146
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	4 cut(s)	85, 188, 410, 686
AjiI	CACGTC	2 cut(s)	47, 1162
AjnI	CCWGG	5 cut(s)	72, 228, 631, 841, 1139
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	3 cut(s)	17, 259, 1064
AluI	AGCT	3 cut(s)	17, 259, 1064
Alw21I	GWGCWC	2 cut(s)	19, 649
Alw26I	GTCTC	2 cut(s)	62, 1039
AlwI	GGATC	4 cut(s)	428, 526, 609, 899
AlwNI	CAGNNNCTG	2 cut(s)	554, 875
AoxI	GGCC	5 cut(s)	7, 160, 279, 387, 776
ApeKI	GCWGC	1 cut(s)	869
ApoI	RAATTY	4 cut(s)	67, 963, 1050, 1125
AspS9I	GGNCC	4 cut(s)	161, 387, 506, 1150
AsuC2I	CCSGG	1 cut(s)	772
AvaII	GGWCC	2 cut(s)	506, 1150
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	2 cut(s)	19, 649
BbvCI	CCTCAGC	2 cut(s)	555, 1023
BbvI	GCAGC	1 cut(s)	881
BccI	CCATC	3 cut(s)	28, 680, 911
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	5 cut(s)	74, 230, 633, 843, 1141
BciVI	GTATCC	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	772
BcoDI	GTCTC	2 cut(s)	62, 1039
BfuAI	ACCTGC	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	621
BisI	GCNGC	1 cut(s)	870
BlsI	GCNGC	1 cut(s)	871
Bme1390I	CCNGG	6 cut(s)	74, 230, 633, 772, 843, 1141
Bme18I	GGWCC	2 cut(s)	506, 1150
BmgBI	CACGTC	2 cut(s)	47, 1162
BmgT120I	GGNCC	4 cut(s)	161, 387, 506, 1150
BmiI	GGNNCC	5 cut(s)	39, 78, 388, 1115, 1151
BmrFI	CCNGG	6 cut(s)	74, 230, 633, 772, 843, 1141
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	3 cut(s)	125, 541, 881
BmuI	ACTGGG	1 cut(s)	757
BplI	GAGNNNNNCTC	2 cut(s)	1113, 1145
BpmI	CTGGAG	1 cut(s)	897
Bpu10I	CCTNAGC	2 cut(s)	555, 1023
BpuMI	CCSGG	1 cut(s)	772
BsaAI	YACGTR	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	72, 157, 228
Bsc4I	CCNNNNNNNGG	3 cut(s)	452, 515, 1146
Bse1I	ACTGG	2 cut(s)	131, 752
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	5 cut(s)	74, 230, 633, 843, 1141
BseDI	CCNNGG	3 cut(s)	72, 157, 228
BseGI	GGATG	3 cut(s)	49, 116, 358
BseLI	CCNNNNNNNGG	3 cut(s)	452, 515, 1146
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	6 cut(s)	24, 546, 561, 656, 1014, 1109
BseNI	ACTGG	2 cut(s)	131, 752
BseXI	GCAGC	1 cut(s)	881
BseYI	CCCAGC	1 cut(s)	348
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	621
BshFI	GGCC	5 cut(s)	9, 162, 281, 389, 778
BsiHKAI	GWGCWC	2 cut(s)	19, 649
BsiSI	CCGG	1 cut(s)	772
BslFI	GGGAC	2 cut(s)	427, 731
BslI	CCNNNNNNNGG	3 cut(s)	452, 515, 1146
BsmAI	GTCTC	2 cut(s)	62, 1039
BsmFI	GGGAC	2 cut(s)	427, 731
BsnI	GGCC	5 cut(s)	9, 162, 281, 389, 778
Bsp1286I	GDGCHC	2 cut(s)	19, 649
Bsp143I	GATC	4 cut(s)	420, 518, 601, 891
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	1 cut(s)	886
BspANI	GGCC	5 cut(s)	9, 162, 281, 389, 778
BspCNI	CTCAG	6 cut(s)	25, 547, 560, 657, 1015, 1110
BspFNI	CGCG	1 cut(s)	621
BspLI	GGNNCC	5 cut(s)	39, 78, 388, 1115, 1151
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	4 cut(s)	428, 526, 609, 899
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	131, 752
BssECI	CCNNGG	3 cut(s)	72, 157, 228
BssMI	GATC	4 cut(s)	420, 518, 601, 891
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	5 cut(s)	74, 230, 633, 843, 1141
Bst4CI	ACNGT	3 cut(s)	510, 742, 835
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	209
BstDEI	CTNAG	8 cut(s)	11, 33, 426, 547, 555, 665, 1023, 1118
BstDSI	CCRYGG	1 cut(s)	157
BstENI	CCTNNNNNAGG	1 cut(s)	1144
BstF5I	GGATG	3 cut(s)	49, 116, 358
BstFNI	CGCG	1 cut(s)	621
BstKTI	GATC	4 cut(s)	423, 521, 604, 894
BstMAI	GTCTC	2 cut(s)	62, 1039
BstMBI	GATC	4 cut(s)	420, 518, 601, 891
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 265, 395
BstNI	CCWGG	5 cut(s)	74, 230, 633, 843, 1141
BstNSI	RCATGY	2 cut(s)	464, 487
BstSCI	CCNGG	6 cut(s)	72, 228, 631, 770, 841, 1139
BstUI	CGCG	1 cut(s)	621
BstV1I	GCAGC	1 cut(s)	881
BstX2I	RGATCY	1 cut(s)	420
BstXI	CCANNNNNNTGG	1 cut(s)	959
BstYI	RGATCY	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	621
BsuRI	GGCC	5 cut(s)	9, 162, 281, 389, 778
BtgI	CCRYGG	1 cut(s)	157
BtrI	CACGTC	2 cut(s)	47, 1162
BtsCI	GGATG	3 cut(s)	49, 116, 358
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	3 cut(s)	339, 444, 840
BveI	ACCTGC	1 cut(s)	287
CaiI	CAGNNNCTG	2 cut(s)	554, 875
Cfr13I	GGNCC	4 cut(s)	161, 387, 506, 1150
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	6 cut(s)	158, 461, 484, 860, 930, 1005
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	8 cut(s)	11, 33, 426, 547, 555, 665, 1023, 1118
DpnI	GATC	4 cut(s)	422, 520, 603, 893
DpnII	GATC	4 cut(s)	420, 518, 601, 891
DraIII	CACNNNGTG	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	2 cut(s)	9, 778
Eco24I	GRGCYC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	506, 1150
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	1144
EcoRI	GAATTC	2 cut(s)	963, 1125
EcoRII	CCWGG	5 cut(s)	72, 228, 631, 841, 1139
EcoRV	GATATC	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	6 cut(s)	161, 464, 487, 863, 933, 1008
FaqI	GGGAC	2 cut(s)	427, 731
FatI	CATG	6 cut(s)	157, 460, 483, 859, 929, 1004
FauI	CCCGC	1 cut(s)	879
FauNDI	CATATG	2 cut(s)	571, 970
Fnu4HI	GCNGC	1 cut(s)	870
FokI	GGATG	3 cut(s)	36, 103, 365
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	870
GluI	GCNGC	1 cut(s)	870
GsaI	CCCAGC	1 cut(s)	352
GsuI	CTGGAG	1 cut(s)	897
HaeIII	GGCC	5 cut(s)	9, 162, 281, 389, 778
HapII	CCGG	1 cut(s)	772
HgaI	GACGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	6 cut(s)	161, 464, 487, 863, 933, 1008
HincII	GTYRAC	3 cut(s)	432, 481, 768
HindII	GTYRAC	3 cut(s)	432, 481, 768
HinfI	GANTC	1 cut(s)	702
HpaI	GTTAAC	1 cut(s)	432
HpaII	CCGG	1 cut(s)	772
Hpy166II	GTNNAC	4 cut(s)	432, 481, 745, 768
Hpy188I	TCNGA	2 cut(s)	550, 947
Hpy188III	TCNNGA	3 cut(s)	407, 876, 1111
Hpy8I	GTNNAC	4 cut(s)	432, 481, 745, 768
HpyAV	CCTTC	2 cut(s)	258, 300
HpyCH4III	ACNGT	3 cut(s)	510, 742, 835
HpyCH4IV	ACGT	5 cut(s)	46, 100, 208, 1083, 1161
HpyCH4V	TGCA	7 cut(s)	296, 314, 489, 569, 712, 869, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 265, 395
HpyF3I	CTNAG	8 cut(s)	11, 33, 426, 547, 555, 665, 1023, 1118
HpySE526I	ACGT	5 cut(s)	46, 100, 208, 1083, 1161
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	6 cut(s)	161, 464, 487, 863, 933, 1008
KspAI	GTTAAC	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	420, 518, 601, 891
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	881
LweI	GCATC	3 cut(s)	125, 541, 881
MaeII	ACGT	5 cut(s)	46, 100, 208, 1083, 1161
MaeIII	GTNAC	3 cut(s)	124, 274, 992
MalI	GATC	4 cut(s)	422, 520, 603, 893
MboI	GATC	4 cut(s)	420, 518, 601, 891
MboII	GAAGA	2 cut(s)	608, 836
MflI	RGATCY	1 cut(s)	420
MhlI	GDGCHC	2 cut(s)	19, 649
MluCI	AATT	9 cut(s)	25, 67, 522, 531, 624, 681, 963, 1050, 1125
MmeI	TCCRAC	1 cut(s)	1111
MseI	TTAA	5 cut(s)	110, 431, 530, 657, 1017
MslI	CAYNNNNRTG	1 cut(s)	864
MspI	CCGG	1 cut(s)	772
MspR9I	CCNGG	6 cut(s)	74, 230, 633, 772, 843, 1141
MvaI	CCWGG	5 cut(s)	74, 230, 633, 843, 1141
MvnI	CGCG	1 cut(s)	621
MwoI	GCNNNNNNNGC	3 cut(s)	113, 265, 395
NciI	CCSGG	1 cut(s)	772
NcoI	CCATGG	1 cut(s)	157
NdeI	CATATG	2 cut(s)	571, 970
NdeII	GATC	4 cut(s)	420, 518, 601, 891
NlaIII	CATG	6 cut(s)	161, 464, 487, 863, 933, 1008
NlaIV	GGNNCC	5 cut(s)	39, 78, 388, 1115, 1151
NmuCI	GTSAC	3 cut(s)	124, 274, 992
NspI	RCATGY	2 cut(s)	464, 487
PceI	AGGCCT	2 cut(s)	9, 778
PciI	ACATGT	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	1089
PfeI	GAWTC	1 cut(s)	702
PkrI	GCNGC	1 cut(s)	871
Ppu21I	YACGTR	1 cut(s)	209
PscI	ACATGT	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	5 cut(s)	72, 228, 631, 841, 1139
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	5 cut(s)	72, 228, 631, 841, 1139
PspN4I	GGNNCC	5 cut(s)	39, 78, 388, 1115, 1151
PspPI	GGNCC	4 cut(s)	161, 387, 506, 1150
PstNI	CAGNNNCTG	2 cut(s)	554, 875
PsuI	RGATCY	1 cut(s)	420
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	864
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	5 cut(s)	110, 431, 530, 657, 1017
SatI	GCNGC	1 cut(s)	870
Sau3AI	GATC	4 cut(s)	420, 518, 601, 891
Sau96I	GGNCC	4 cut(s)	161, 387, 506, 1150
ScrFI	CCNGG	6 cut(s)	74, 230, 633, 772, 843, 1141
SduI	GDGCHC	2 cut(s)	19, 649
SfaNI	GCATC	3 cut(s)	125, 541, 881
SinI	GGWCC	2 cut(s)	506, 1150
SmiMI	CAYNNNNRTG	1 cut(s)	864
Sse9I	AATT	9 cut(s)	25, 67, 522, 531, 624, 681, 963, 1050, 1125
SseBI	AGGCCT	2 cut(s)	9, 778
SsiI	CCGC	1 cut(s)	886
SspI	AATATT	1 cut(s)	757
SstI	GAGCTC	1 cut(s)	19
StuI	AGGCCT	2 cut(s)	9, 778
StyD4I	CCNGG	6 cut(s)	72, 228, 631, 770, 841, 1139
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	3 cut(s)	510, 742, 835
TaiI	ACGT	5 cut(s)	49, 103, 211, 1086, 1164
TaqI	TCGA	2 cut(s)	196, 894
TasI	AATT	9 cut(s)	25, 67, 522, 531, 624, 681, 963, 1050, 1125
TfiI	GAWTC	1 cut(s)	702
Tru1I	TTAA	5 cut(s)	110, 431, 530, 657, 1017
Tru9I	TTAA	5 cut(s)	110, 431, 530, 657, 1017
TscAI	CASTG	3 cut(s)	339, 444, 840
TseFI	GTSAC	3 cut(s)	124, 274, 992
TseI	GCWGC	1 cut(s)	869
Tsp45I	GTSAC	3 cut(s)	124, 274, 992
TspDTI	ATGAA	2 cut(s)	593, 848
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	3 cut(s)	339, 444, 840
VpaK11BI	GGWCC	2 cut(s)	506, 1150
XagI	CCTNNNNNAGG	1 cut(s)	1144
XapI	RAATTY	4 cut(s)	67, 963, 1050, 1125
XceI	RCATGY	2 cut(s)	464, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.