RLG00000006972

Sulfite oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002104
Physical Location & Seq
Reverse (-)
12233433 .. 12234106
674 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006972

Sequence Viewer

Length: 384 bp
ATGGATTTTCCAGTTCAGTCTGTGATTTGTTCTTTGGAGGAAGAAAATACAGTAGAGCCTGGAAAGATTGTAGTTCATGGATATGCAGTGTCTGGAGGCGGTTGGGGGATTGAGCGAGTAGATGTATCTTTCGATGGAGGCAAGACATGGGAGGAAGCAATCAGATACCAGAAGAGTACTGAAGTCCCATACGTTGCTGATGATACAAGTAGTGGTGACAAGTGGGCATGGGTGCTGTTTAAGGCTGAAGCAGATCTCTCTCACAATACTGAAATCGTCACCAAAGCAGTTGATATAGCTGGAAATGTCCAAACCCGAAAATGTGGGTGTCATCTGGAACCTGAGAGGAATACAAAACACGTCTTGGCACAGGGTCCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 ko01100 ko01120 map00920 map01100 map01120
Pfam Domains
Protein Families
Mo-co_dimer Oxidored_molyb

Protein Analysis

128

Amino Acids

13.92

Weight (kDa)

4.88

Isoelectric Point (pI)

30.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mo-co_dimer PF03404 1 - 107 1.6e-25 Mo-co oxidoreductase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 201, 267
AfaI GTAC 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 358
AjiI CACGTC 1 cut(s) 361
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
AlwNI CAGNNNCTG 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 227, 271
AvaII GGWCC 1 cut(s) 374
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 60
BglII AGATCT 1 cut(s) 253
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 374
BmgBI CACGTC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 339, 375
BmrFI CCNGG 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 339, 375
BsrI ACTGG 1 cut(s) 11
BssMI GATC 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 342
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BtrI CACGTC 1 cut(s) 361
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
CaiI CAGNNNCTG 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 177
CviAII CATG 3 cut(s) 77, 147, 228
CviJI RGCY 3 cut(s) 58, 245, 299
CviKI_1 RGCY 3 cut(s) 58, 245, 299
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 1 cut(s) 342
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 374
Eco57I CTGAAG 2 cut(s) 201, 267
EcoO109I RGGNCCY 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 80, 150, 231
FaiI YATR 6 cut(s) 78, 84, 148, 190, 229, 296
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 76, 146, 227
GsuI CTGGAG 1 cut(s) 114
Hin1II CATG 3 cut(s) 80, 150, 231
HphI GGTGA 2 cut(s) 227, 271
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 2 cut(s) 93, 335
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 2 cut(s) 192, 360
HpyCH4V TGCA 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 2 cut(s) 192, 360
Hsp92II CATG 3 cut(s) 80, 150, 231
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 9 cut(s) 24, 45, 72, 78, 182, 285, 320, 354, 356
MaeII ACGT 2 cut(s) 192, 360
MaeIII GTNAC 2 cut(s) 215, 277
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 2 cut(s) 53, 184
MflI RGATCY 1 cut(s) 253
MnlI CCTC 5 cut(s) 31, 89, 131, 145, 339
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
NdeII GATC 1 cut(s) 253
NlaIII CATG 3 cut(s) 80, 150, 231
NlaIV GGNNCC 2 cut(s) 339, 375
NmuCI GTSAC 2 cut(s) 215, 277
PpuMI RGGWCCY 1 cut(s) 374
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 339, 375
PspPI GGNCC 1 cut(s) 374
PspPPI RGGWCCY 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 1 cut(s) 374
ScaI AGTACT 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 60
SetI ASST 4 cut(s) 195, 301, 343, 363
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 81
SsiI CCGC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 2 cut(s) 195, 363
TaqI TCGA 1 cut(s) 132
TatI WGTACW 1 cut(s) 176
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 2 cut(s) 215, 277
Tsp45I GTSAC 2 cut(s) 215, 277
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 374
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.