Rh2AG664800

Sulfite oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002104
Physical Location & Seq
Reverse (-)
88005667 .. 88010240
4574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG664800.1

Sequence Viewer

Length: 945 bp
ATGCCCGGCGTCACTGGTCCTTCAGATTACTCGCGGGAGCCGCCTCGACATCCGAGCCTCAAAATCAATGCCAAGGAGCCTTTCAACGCCGAGCCACCGCGCTCAGCTCTCGGCGCCGCTTACGTCACTCCGGTGGAGTTCTTCTACAAGAGAAACCACGGTCCTATTCCAGTAGTCGATGACATCCACAGCTACTCTGTTTCCATAACCGGATTGATCGAAAATCCGAAGCAGCTGTTTTTGAATGATATCAAGGCGCTTCCAAAGTATAATGTCACTGCTACATTGCAGTGTGCAGGTAATAGGAGGACAGCTATGAGCCAAACTCGGACTGTCAAGGGAGTAGGGTGGGATGTTTCTGCGATAGGAAATGCTGTATGGGGTGGTGCGAAATTGGCTGATGTGCTTGAACTTGTGGGAATACCAAAGTTGACAGGCGCAACTAAATCCGGTGGAAAACATGTCGAGTTTGTAAGCGTTGATAGGTGTAAGGAGGAGAATGGAGGCCCCTACAAGGCATCAATTCCATTGATTCAGGCCACAAGCCCAGAAGCAGATGTTTTACTTGCTTATGAGATGAATGGAGAGACCCTAAACAGGGATCATGGGTATCCATTGCGTGTAGTTGTACCTGGTGTTATAGGTGCCCGTTCTGTTAAATGGCTTGATTCTATTAATGTCATTGCAGAGGAATGTCAGGGCTTCTTTATGCAAAAGGACTACAAAATGTTTCCACCTTCAGTAAACTGGGATAACATTAATTGGTCCACCAGGAGGCCACAAATGGATTTTCCTGTCCAGTGTGTAATTTGTTCTTTAGAGGATGTGAATGCAATAAAGCCTGGAAAGGTTGGTTCTGTTTGCAAACTGCAATATTTTCCATCTCTTTATGCAATTGAATATGTCTATTGTTTACTTTACATTATGGCATGTACAGAGACCTGA

Protein Analysis

314

Amino Acids

34.58

Weight (kDa)

7.54

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_molyb PF00174 53 - 235 3.3e-57 Oxidoreductase molybdopterin binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 287
AccB1I GGYRCC 2 cut(s) 113, 644
AccII CGCG 2 cut(s) 34, 100
AciI CCGC 4 cut(s) 34, 41, 98, 117
AclWI GGATC 1 cut(s) 609
AcuI CTGAAG 2 cut(s) 6, 723
AcyI GRCGYC 2 cut(s) 9, 114
AfaI GTAC 2 cut(s) 630, 934
AfiI CCNNNNNNNGG 4 cut(s) 514, 597, 598, 774
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 4 cut(s) 85, 244, 410, 899
AjnI CCWGG 3 cut(s) 631, 770, 841
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 4 cut(s) 107, 192, 235, 314
AluI AGCT 4 cut(s) 107, 192, 235, 314
Alw26I GTCTC 2 cut(s) 581, 932
AlwI GGATC 1 cut(s) 609
AoxI GGCC 3 cut(s) 505, 537, 776
ApeKI GCWGC 1 cut(s) 232
AseI ATTAAT 2 cut(s) 675, 759
AspLEI GCGC 4 cut(s) 102, 116, 259, 440
AspS9I GGNCC 4 cut(s) 17, 161, 506, 765
AsuC2I CCSGG 1 cut(s) 6
AvaII GGWCC 3 cut(s) 17, 161, 765
BaeGI GKGCMC 1 cut(s) 649
BanI GGYRCC 2 cut(s) 113, 644
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 889
BciT130I CCWGG 3 cut(s) 633, 772, 843
BciVI GTATCC 1 cut(s) 621
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 2 cut(s) 581, 932
BfoI RGCGCY 2 cut(s) 117, 260
BfuAI ACCTGC 1 cut(s) 287
BfuI GTATCC 1 cut(s) 621
BisI GCNGC 3 cut(s) 41, 117, 233
BlpI GCTNAGC 1 cut(s) 103
BlsI GCNGC 3 cut(s) 42, 118, 234
Bme1390I CCNGG 4 cut(s) 6, 633, 772, 843
Bme18I GGWCC 3 cut(s) 17, 161, 765
BmgT120I GGNCC 4 cut(s) 17, 161, 506, 765
BmiI GGNNCC 5 cut(s) 39, 78, 115, 508, 646
BmrFI CCNGG 4 cut(s) 6, 633, 772, 843
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 1 cut(s) 527
BmuI ACTGGG 1 cut(s) 757
BplI GAGNNNNNCTC 2 cut(s) 310, 342
Bpu1102I GCTNAGC 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 6
BsaHI GRCGYC 2 cut(s) 9, 114
BsaI GGTCTC 2 cut(s) 581, 932
BsaJI CCNNGG 2 cut(s) 72, 157
BsaWI WCCGGW 3 cut(s) 130, 209, 449
Bsc4I CCNNNNNNNGG 4 cut(s) 514, 597, 598, 774
Bse1I ACTGG 4 cut(s) 19, 170, 752, 799
Bse3DI GCAATG 3 cut(s) 284, 614, 681
BseBI CCWGG 3 cut(s) 633, 772, 843
BseDI CCNNGG 2 cut(s) 72, 157
BseGI GGATG 4 cut(s) 49, 183, 358, 829
BseLI CCNNNNNNNGG 4 cut(s) 514, 597, 598, 774
BseMI GCAATG 3 cut(s) 284, 614, 681
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 4 cut(s) 19, 170, 752, 799
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 649
BseXI GCAGC 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 315
Bsh1236I CGCG 2 cut(s) 34, 100
BshFI GGCC 3 cut(s) 507, 539, 778
BshNI GGYRCC 2 cut(s) 113, 644
BsiSI CCGG 4 cut(s) 6, 131, 210, 450
BslI CCNNNNNNNGG 4 cut(s) 514, 597, 598, 774
BsmAI GTCTC 2 cut(s) 581, 932
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 3 cut(s) 507, 539, 778
Bso31I GGTCTC 2 cut(s) 581, 932
Bsp1286I GDGCHC 1 cut(s) 649
Bsp1407I TGTACA 1 cut(s) 932
Bsp143I GATC 2 cut(s) 216, 601
Bsp1720I GCTNAGC 1 cut(s) 103
BspACI CCGC 4 cut(s) 34, 41, 98, 117
BspANI GGCC 3 cut(s) 507, 539, 778
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 2 cut(s) 34, 100
BspLI GGNNCC 5 cut(s) 39, 78, 115, 508, 646
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 609
BspT107I GGYRCC 2 cut(s) 113, 644
BspTNI GGTCTC 2 cut(s) 581, 932
BsrDI GCAATG 3 cut(s) 284, 614, 681
BsrGI TGTACA 1 cut(s) 932
BsrI ACTGG 4 cut(s) 19, 170, 752, 799
BssECI CCNNGG 2 cut(s) 72, 157
BssMI GATC 2 cut(s) 216, 601
BssNI GRCGYC 2 cut(s) 9, 114
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 3 cut(s) 633, 772, 843
Bst4CI ACNGT 2 cut(s) 161, 334
BstACI GRCGYC 2 cut(s) 9, 114
BstAUI TGTACA 1 cut(s) 932
BstDEI CTNAG 1 cut(s) 103
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 4 cut(s) 49, 183, 358, 829
BstFNI CGCG 2 cut(s) 34, 100
BstH2I RGCGCY 2 cut(s) 117, 260
BstHHI GCGC 4 cut(s) 102, 116, 259, 440
BstKTI GATC 2 cut(s) 219, 604
BstMAI GTCTC 2 cut(s) 581, 932
BstMBI GATC 2 cut(s) 216, 601
BstMWI GCNNNNNNNGC 3 cut(s) 40, 113, 395
BstNI CCWGG 3 cut(s) 633, 772, 843
BstNSI RCATGY 2 cut(s) 464, 933
BstSCI CCNGG 4 cut(s) 4, 631, 770, 841
BstSLI GKGCMC 1 cut(s) 649
BstUI CGCG 2 cut(s) 34, 100
BstV1I GCAGC 1 cut(s) 244
BsuI GTATCC 1 cut(s) 621
BsuRI GGCC 3 cut(s) 507, 539, 778
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 4 cut(s) 49, 183, 358, 829
BtsI GCAGTG 2 cut(s) 276, 296
BtsIMutI CAGTG 4 cut(s) 12, 276, 296, 806
BveI ACCTGC 1 cut(s) 287
CfoI GCGC 4 cut(s) 102, 116, 259, 440
Cfr13I GGNCC 4 cut(s) 17, 161, 506, 765
CsiI ACCWGGT 1 cut(s) 631
Csp6I GTAC 2 cut(s) 629, 933
CviAII CATG 3 cut(s) 461, 605, 930
CviQI GTAC 2 cut(s) 629, 933
DdeI CTNAG 1 cut(s) 103
DinI GGCGCC 1 cut(s) 115
DpnI GATC 2 cut(s) 218, 603
DpnII GATC 2 cut(s) 216, 601
Eco130I CCWWGG 1 cut(s) 72
Eco31I GGTCTC 2 cut(s) 581, 932
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 3 cut(s) 17, 161, 765
Eco57I CTGAAG 2 cut(s) 6, 723
EcoO109I RGGNCCY 1 cut(s) 506
EcoRII CCWGG 3 cut(s) 631, 770, 841
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 72
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 3 cut(s) 464, 608, 933
FatI CATG 3 cut(s) 460, 604, 929
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 41, 117, 233
FokI GGATG 4 cut(s) 36, 170, 365, 836
Fsp4HI GCNGC 3 cut(s) 41, 117, 233
GlaI GCGC 4 cut(s) 101, 115, 258, 439
GluI GCNGC 3 cut(s) 41, 117, 233
HaeII RGCGCY 2 cut(s) 117, 260
HaeIII GGCC 3 cut(s) 507, 539, 778
HapII CCGG 4 cut(s) 6, 131, 210, 450
HhaI GCGC 4 cut(s) 102, 116, 259, 440
Hin1I GRCGYC 2 cut(s) 9, 114
Hin1II CATG 3 cut(s) 464, 608, 933
Hin6I GCGC 4 cut(s) 100, 114, 257, 438
HinP1I GCGC 4 cut(s) 100, 114, 257, 438
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 2 cut(s) 532, 668
HpaII CCGG 4 cut(s) 6, 131, 210, 450
Hpy166II GTNNAC 4 cut(s) 432, 745, 768, 914
Hpy188I TCNGA 4 cut(s) 25, 54, 228, 330
Hpy8I GTNNAC 4 cut(s) 432, 745, 768, 914
HpyAV CCTTC 2 cut(s) 30, 747
HpyCH4III ACNGT 2 cut(s) 161, 334
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 8 cut(s) 289, 296, 686, 712, 833, 864, 871, 893
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 113, 395
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 2 cut(s) 9, 114
Hsp92II CATG 3 cut(s) 464, 608, 933
HspAI GCGC 4 cut(s) 100, 114, 257, 438
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 2 cut(s) 216, 601
LmnI GCTCC 2 cut(s) 37, 76
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 527
MabI ACCWGGT 1 cut(s) 631
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 3 cut(s) 10, 124, 274
MalI GATC 2 cut(s) 218, 603
MboI GATC 2 cut(s) 216, 601
MboII GAAGA 1 cut(s) 133
MfeI CAATTG 1 cut(s) 894
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 5 cut(s) 392, 522, 760, 807, 894
Mly113I GGCGCC 1 cut(s) 114
MnlI CCTC 8 cut(s) 54, 68, 300, 487, 497, 682, 768, 814
MseI TTAA 3 cut(s) 657, 675, 759
MslI CAYNNNNRTG 2 cut(s) 131, 289
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 4 cut(s) 6, 131, 210, 450
MspR9I CCNGG 4 cut(s) 6, 633, 772, 843
MunI CAATTG 1 cut(s) 894
Mva1269I GAATGC 1 cut(s) 835
MvaI CCWGG 3 cut(s) 633, 772, 843
MvnI CGCG 2 cut(s) 34, 100
MwoI GCNNNNNNNGC 3 cut(s) 40, 113, 395
NarI GGCGCC 1 cut(s) 114
NciI CCSGG 1 cut(s) 6
NdeII GATC 2 cut(s) 216, 601
NlaIII CATG 3 cut(s) 464, 608, 933
NlaIV GGNNCC 5 cut(s) 39, 78, 115, 508, 646
NmeAIII GCCGAG 2 cut(s) 90, 115
NmuCI GTSAC 3 cut(s) 10, 124, 274
NspI RCATGY 2 cut(s) 464, 933
OliI CACNNNNGTG 1 cut(s) 131
PciI ACATGT 1 cut(s) 460
PctI GAATGC 1 cut(s) 835
PfeI GAWTC 2 cut(s) 532, 668
PkrI GCNGC 3 cut(s) 42, 118, 234
PluTI GGCGCC 1 cut(s) 117
PscI ACATGT 1 cut(s) 460
PshBI ATTAAT 2 cut(s) 675, 759
Psp6I CCWGG 3 cut(s) 631, 770, 841
PspGI CCWGG 3 cut(s) 631, 770, 841
PspN4I GGNNCC 5 cut(s) 39, 78, 115, 508, 646
PspPI GGNCC 4 cut(s) 17, 161, 506, 765
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 2 cut(s) 630, 934
RsaNI GTAC 2 cut(s) 629, 933
RseI CAYNNNNRTG 2 cut(s) 131, 289
SaqAI TTAA 3 cut(s) 657, 675, 759
SatI GCNGC 3 cut(s) 41, 117, 233
Sau3AI GATC 2 cut(s) 216, 601
Sau96I GGNCC 4 cut(s) 17, 161, 506, 765
ScrFI CCNGG 4 cut(s) 6, 633, 772, 843
SduI GDGCHC 1 cut(s) 649
SexAI ACCWGGT 1 cut(s) 631
SfaNI GCATC 1 cut(s) 527
SfoI GGCGCC 1 cut(s) 115
SinI GGWCC 3 cut(s) 17, 161, 765
SmiMI CAYNNNNRTG 2 cut(s) 131, 289
Sse9I AATT 5 cut(s) 392, 522, 760, 807, 894
SsiI CCGC 4 cut(s) 34, 41, 98, 117
SspDI GGCGCC 1 cut(s) 113
SspI AATATT 1 cut(s) 875
StyD4I CCNGG 4 cut(s) 4, 631, 770, 841
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 161, 334
TaiI ACGT 1 cut(s) 126
TaqI TCGA 4 cut(s) 46, 177, 219, 465
TasI AATT 5 cut(s) 392, 522, 760, 807, 894
TatI WGTACW 1 cut(s) 932
TauI GCSGC 2 cut(s) 43, 119
TfiI GAWTC 2 cut(s) 532, 668
Tru1I TTAA 3 cut(s) 657, 675, 759
Tru9I TTAA 3 cut(s) 657, 675, 759
TscAI CASTG 4 cut(s) 19, 283, 296, 806
TseFI GTSAC 3 cut(s) 10, 124, 274
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 3 cut(s) 10, 124, 274
TspDTI ATGAA 1 cut(s) 593
TspRI CASTG 4 cut(s) 19, 283, 296, 806
VpaK11BI GGWCC 3 cut(s) 17, 161, 765
VspI ATTAAT 2 cut(s) 675, 759
XceI RCATGY 2 cut(s) 464, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.