MD16G1118100.v1.1

Sulfite oxidase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
8395611 .. 8398487
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1118100.v1.1.491

Sequence Viewer

Length: 1179 bp
ATGTCAGGTCTAAGAGCCCCGTCTGATTATTCTGAGGAGCCACCTCGTCATCCAAGTCTCCTTGTTAATTCCCAGGAACCTTTTAATGCAGAACCACCACGTGCGGCGTTATTAGAGTCGTACGTGACACCGGTGGATTTGTTCTACAAGCGAAACCATGGCCCTATCCCTGTCGTCGATGACATTGAAAGGTATCGATTGTCTATATGCGGTTTGGTGGAGAAACCCTTGGAGATATCAATGGTTGACATTGTGAATCTGCCGAAGCACATTGTGACAGCCACTCTACAATGTGCAGGTAACAGAAGGACCGCAATGAGCAAAGTGAAAACAGTGAAAGGCGTTGGCTGGGACGTTTCCGCCATTGGAAACGCCGTTTGGGGTGGGGCTAAACTCGCTGATGTTCTCAAACTTGTGGGAATCGCTAAGTTAACATCAGTTTCCCCGTTGGGAGGAAAGCACGTTGAGTTTGTAAGCGTTGACATGTGCAAGGAAAAGGGCGGACCTTACAAGGCGTCAATACCGATGATTCAAGCAACAAACTCGGACGCTGAAGTTTTACTAGCATATGAAATGAATGGAGAGCCTCTAAACCGGGATCATGGGTATCCGCTGCGTGTAGTTGTTCCGGGTGTTATAGGTGCCCGTTCTGTCAAATGGCTGAGTTCCATCAACATAATCGAAAACGAATGCCAGGGATTCTTTATGCAAAGGGACTACAAAATGTTTCCTCCTACTGTGAACTGGGAAAATATCGATTGGTCAACCCGGCGGCCTCAGATGGATTTTCCTGTTCAGTCTGTAATTTGTTCTTTGGAGGAAGAAAACGCTGTAAATCCTGGAAAAGTAGTAGTTCATGGTTATGCCGTGTCTGGAGGTGGGCGGGGGATTGAGCGAGTAGATGTATCGTTCGATGGTGGCAGGACGTGGGTGGAAGCAACCCGATACCAAAAGAGTGGAGCTCCATATGTTGCAGATGATGCGAGTAGCGACAAGTGGGGATGGGTGCTTTTTAAGGCTGAGGCGATTGTCTCTCGCAGCACTGAAATCGTGGCTAAAGCAATCGATATAGCTGCAAACGTCCAACCCGAAAATGTGGACGCCATCTGGAACCTGAGAGGAATACTGAACACATCGTGGCATAGGGTTCGAATTCACGTTGAACACACCGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

393

Amino Acids

43.23

Weight (kDa)

6.17

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_molyb PF00174 53 - 234 8.7e-57 Oxidoreductase molybdopterin binding domain
Mo-co_dimer PF03404 259 - 387 2.1e-36 Mo-co oxidoreductase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 641
AciI CCGC 8 cut(s) 104, 210, 312, 360, 501, 611, 772, 883
AclWI GGATC 1 cut(s) 606
AcsI RAATTY 1 cut(s) 1152
AcuI CTGAAG 1 cut(s) 573
AcvI CACGTG 1 cut(s) 101
AcyI GRCGYC 2 cut(s) 515, 1101
AdeI CACNNNGTG 3 cut(s) 101, 274, 1137
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 483
AgeI ACCGGT 1 cut(s) 130
AgsI TTSAA 3 cut(s) 188, 533, 1163
AjiI CACGTC 1 cut(s) 927
AjnI CCWGG 3 cut(s) 72, 693, 838
AjuI GAANNNNNNNTTGG 2 cut(s) 361, 393
AluBI AGCT 2 cut(s) 962, 1073
AluI AGCT 2 cut(s) 962, 1073
Alw21I GWGCWC 1 cut(s) 964
Alw26I GTCTC 2 cut(s) 62, 1036
AlwI GGATC 1 cut(s) 606
AoxI GGCC 2 cut(s) 160, 773
ApeKI GCWGC 3 cut(s) 613, 1038, 1073
ApoI RAATTY 1 cut(s) 1152
AsiGI ACCGGT 1 cut(s) 130
AspS9I GGNCC 3 cut(s) 161, 309, 503
AsuC2I CCSGG 3 cut(s) 596, 630, 769
AsuII TTCGAA 1 cut(s) 1150
AvaII GGWCC 2 cut(s) 309, 503
BaeGI GKGCMC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 2 cut(s) 19, 964
BbrPI CACGTG 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 964
BbvCI CCTCAGC 1 cut(s) 1020
BbvI GCAGC 3 cut(s) 600, 1050, 1060
BccI CCATC 5 cut(s) 677, 775, 908, 996, 1112
BceAI ACGGC 2 cut(s) 359, 851
BcgI CGANNNNNNTGC 8 cut(s) 525, 559, 1030, 1055, 1064, 1089, 1130, 1164
BciT130I CCWGG 3 cut(s) 74, 695, 840
BciVI GTATCC 1 cut(s) 618
BcnI CCSGG 3 cut(s) 596, 630, 769
BcoDI GTCTC 2 cut(s) 62, 1036
BfaI CTAG 1 cut(s) 563
BfuAI ACCTGC 1 cut(s) 287
BfuI GTATCC 1 cut(s) 618
BisI GCNGC 5 cut(s) 105, 614, 773, 1039, 1074
BlsI GCNGC 5 cut(s) 106, 615, 774, 1040, 1075
Bme1390I CCNGG 6 cut(s) 74, 596, 630, 695, 769, 840
Bme18I GGWCC 2 cut(s) 309, 503
BmgBI CACGTC 1 cut(s) 927
BmgT120I GGNCC 3 cut(s) 161, 309, 503
BmiI GGNNCC 4 cut(s) 39, 78, 643, 1112
BmrFI CCNGG 6 cut(s) 74, 596, 630, 695, 769, 840
BmrI ACTGGG 1 cut(s) 754
BmsI GCATC 1 cut(s) 970
BmuI ACTGGG 1 cut(s) 754
BplI GAGNNNNNCTC 2 cut(s) 946, 978
BpmI CTGGAG 1 cut(s) 894
Bpu10I CCTNAGC 1 cut(s) 1020
Bpu14I TTCGAA 1 cut(s) 1150
BpuMI CCSGG 3 cut(s) 596, 630, 769
Bsa29I ATCGAT 3 cut(s) 196, 756, 1065
BsaAI YACGTR 2 cut(s) 101, 124
BsaHI GRCGYC 2 cut(s) 515, 1101
BsaJI CCNNGG 4 cut(s) 72, 157, 228, 694
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 749
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 3 cut(s) 74, 695, 840
BseCI ATCGAT 3 cut(s) 196, 756, 1065
BseDI CCNNGG 4 cut(s) 72, 157, 228, 694
BseGI GGATG 2 cut(s) 49, 1007
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 5 cut(s) 24, 653, 791, 1011, 1106
BseNI ACTGG 1 cut(s) 749
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 646
BseXI GCAGC 3 cut(s) 600, 1050, 1060
BseYI CCCAGC 1 cut(s) 348
BsgI GTGCAG 1 cut(s) 315
BshFI GGCC 2 cut(s) 162, 775
BshNI GGYRCC 1 cut(s) 641
BshTI ACCGGT 1 cut(s) 130
BshVI ATCGAT 3 cut(s) 196, 756, 1065
BsiHKAI GWGCWC 1 cut(s) 964
BsiSI CCGG 4 cut(s) 131, 595, 629, 769
BsiWI CGTACG 1 cut(s) 120
BslFI GGGAC 2 cut(s) 365, 728
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 2 cut(s) 62, 1036
BsmFI GGGAC 2 cut(s) 365, 728
BsmI GAATGC 1 cut(s) 695
BsnI GGCC 2 cut(s) 162, 775
Bsp119I TTCGAA 1 cut(s) 1150
Bsp1286I GDGCHC 3 cut(s) 19, 646, 964
Bsp143I GATC 1 cut(s) 598
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 8 cut(s) 104, 210, 312, 360, 501, 611, 772, 883
BspANI GGCC 2 cut(s) 162, 775
BspCNI CTCAG 5 cut(s) 25, 654, 790, 1012, 1107
BspDI ATCGAT 3 cut(s) 196, 756, 1065
BspLI GGNNCC 4 cut(s) 39, 78, 643, 1112
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 606
BspT104I TTCGAA 1 cut(s) 1150
BspT107I GGYRCC 1 cut(s) 641
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 1 cut(s) 749
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 4 cut(s) 72, 157, 228, 694
BssMI GATC 1 cut(s) 598
BssNI GRCGYC 2 cut(s) 515, 1101
BssT1I CCWWGG 2 cut(s) 157, 228
Bst2UI CCWGG 3 cut(s) 74, 695, 840
Bst4CI ACNGT 2 cut(s) 334, 739
BstACI GRCGYC 2 cut(s) 515, 1101
BstAPI GCANNNNNTGC 1 cut(s) 980
BstBAI YACGTR 2 cut(s) 101, 124
BstBI TTCGAA 1 cut(s) 1150
BstDEI CTNAG 7 cut(s) 11, 33, 426, 662, 777, 1020, 1115
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 49, 1007
BstKTI GATC 1 cut(s) 601
BstMAI GTCTC 2 cut(s) 62, 1036
BstMBI GATC 1 cut(s) 598
BstMWI GCNNNNNNNGC 2 cut(s) 395, 980
BstNI CCWGG 3 cut(s) 74, 695, 840
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 6 cut(s) 72, 594, 628, 693, 767, 838
BstSLI GKGCMC 1 cut(s) 646
BstV1I GCAGC 3 cut(s) 600, 1050, 1060
BstXI CCANNNNNNTGG 1 cut(s) 956
Bsu15I ATCGAT 3 cut(s) 196, 756, 1065
BsuI GTATCC 1 cut(s) 618
BsuRI GGCC 2 cut(s) 162, 775
BsuTUI ATCGAT 3 cut(s) 196, 756, 1065
BtgI CCRYGG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 927
BtsCI GGATG 2 cut(s) 49, 1007
BtsIMutI CAGTG 2 cut(s) 339, 1041
BveI ACCTGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 3 cut(s) 161, 309, 503
ClaI ATCGAT 3 cut(s) 196, 756, 1065
CseI GACGC 3 cut(s) 504, 557, 1109
Csp6I GTAC 1 cut(s) 121
CspAI ACCGGT 1 cut(s) 130
CviAII CATG 4 cut(s) 158, 484, 602, 857
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 7 cut(s) 11, 33, 426, 662, 777, 1020, 1115
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
DraIII CACNNNGTG 3 cut(s) 101, 274, 1137
EciI GGCGGA 2 cut(s) 349, 516
Ecl136II GAGCTC 1 cut(s) 962
Eco130I CCWWGG 2 cut(s) 157, 228
Eco24I GRGCYC 2 cut(s) 19, 964
Eco32I GATATC 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 309, 503
Eco53kI GAGCTC 1 cut(s) 962
Eco57I CTGAAG 1 cut(s) 573
Eco72I CACGTG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 962
EcoRI GAATTC 1 cut(s) 1152
EcoRII CCWGG 3 cut(s) 72, 693, 838
EcoRV GATATC 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 157, 228
EcoT38I GRGCYC 2 cut(s) 19, 964
ErhI CCWWGG 2 cut(s) 157, 228
FaeI CATG 4 cut(s) 161, 487, 605, 860
FaqI GGGAC 2 cut(s) 365, 728
FatI CATG 4 cut(s) 157, 483, 601, 856
FauI CCCGC 1 cut(s) 876
FauNDI CATATG 2 cut(s) 568, 967
Fnu4HI GCNGC 5 cut(s) 105, 614, 773, 1039, 1074
FokI GGATG 2 cut(s) 36, 1014
FriOI GRGCYC 2 cut(s) 19, 964
Fsp4HI GCNGC 5 cut(s) 105, 614, 773, 1039, 1074
FspBI CTAG 1 cut(s) 563
GluI GCNGC 5 cut(s) 105, 614, 773, 1039, 1074
GsaI CCCAGC 1 cut(s) 352
GsuI CTGGAG 1 cut(s) 894
HaeIII GGCC 2 cut(s) 162, 775
HapII CCGG 4 cut(s) 131, 595, 629, 769
HgaI GACGC 3 cut(s) 504, 557, 1109
Hin1I GRCGYC 2 cut(s) 515, 1101
Hin1II CATG 4 cut(s) 161, 487, 605, 860
HincII GTYRAC 4 cut(s) 247, 432, 481, 765
HindII GTYRAC 4 cut(s) 247, 432, 481, 765
HinfI GANTC 5 cut(s) 116, 256, 420, 529, 699
HpaI GTTAAC 1 cut(s) 432
HpaII CCGG 4 cut(s) 131, 595, 629, 769
Hpy166II GTNNAC 6 cut(s) 247, 432, 481, 742, 765, 1099
Hpy188I TCNGA 4 cut(s) 25, 34, 547, 780
Hpy188III TCNNGA 2 cut(s) 873, 1108
Hpy8I GTNNAC 6 cut(s) 247, 432, 481, 742, 765, 1099
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 2 cut(s) 334, 739
HpyCH4IV ACGT 7 cut(s) 100, 123, 354, 462, 926, 1080, 1158
HpyCH4V TGCA 6 cut(s) 89, 296, 489, 709, 974, 1076
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 980
HpyF3I CTNAG 7 cut(s) 11, 33, 426, 662, 777, 1020, 1115
HpySE526I ACGT 7 cut(s) 100, 123, 354, 462, 926, 1080, 1158
Hsp92I GRCGYC 2 cut(s) 515, 1101
Hsp92II CATG 4 cut(s) 161, 487, 605, 860
KspAI GTTAAC 1 cut(s) 432
Kzo9I GATC 1 cut(s) 598
LmnI GCTCC 3 cut(s) 37, 959, 967
Lsp1109I GCAGC 3 cut(s) 600, 1050, 1060
LweI GCATC 1 cut(s) 970
MaeI CTAG 1 cut(s) 563
MaeII ACGT 7 cut(s) 100, 123, 354, 462, 926, 1080, 1158
MaeIII GTNAC 3 cut(s) 124, 274, 299
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 1 cut(s) 833
MhlI GDGCHC 3 cut(s) 19, 646, 964
MluCI AATT 3 cut(s) 67, 804, 1152
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 1108
MseI TTAA 4 cut(s) 66, 84, 431, 1014
MslI CAYNNNNRTG 1 cut(s) 861
MspA1I CMGCKG 1 cut(s) 613
MspI CCGG 4 cut(s) 131, 595, 629, 769
MspR9I CCNGG 6 cut(s) 74, 596, 630, 695, 769, 840
Mva1269I GAATGC 1 cut(s) 695
MvaI CCWGG 3 cut(s) 74, 695, 840
MwoI GCNNNNNNNGC 2 cut(s) 395, 980
NciI CCSGG 3 cut(s) 596, 630, 769
NcoI CCATGG 1 cut(s) 157
NdeI CATATG 2 cut(s) 568, 967
NdeII GATC 1 cut(s) 598
NlaIII CATG 4 cut(s) 161, 487, 605, 860
NlaIV GGNNCC 4 cut(s) 39, 78, 643, 1112
NmuCI GTSAC 2 cut(s) 124, 274
NspI RCATGY 1 cut(s) 487
NspV TTCGAA 1 cut(s) 1150
PciI ACATGT 1 cut(s) 483
PcsI WCGNNNNNNNCGW 1 cut(s) 1086
PctI GAATGC 1 cut(s) 695
PfeI GAWTC 4 cut(s) 256, 420, 529, 699
Pfl23II CGTACG 1 cut(s) 120
PfoI TCCNGGA 1 cut(s) 838
PinAI ACCGGT 1 cut(s) 130
PkrI GCNGC 5 cut(s) 106, 615, 774, 1040, 1075
PleI GAGTC 1 cut(s) 124
PmaCI CACGTG 1 cut(s) 101
PmlI CACGTG 1 cut(s) 101
PpsI GAGTC 1 cut(s) 124
Ppu21I YACGTR 2 cut(s) 101, 124
PscI ACATGT 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 964
Psp6I CCWGG 3 cut(s) 72, 693, 838
PspCI CACGTG 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 348
PspGI CCWGG 3 cut(s) 72, 693, 838
PspLI CGTACG 1 cut(s) 120
PspN4I GGNNCC 4 cut(s) 39, 78, 643, 1112
PspPI GGNCC 3 cut(s) 161, 309, 503
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 861
SacI GAGCTC 1 cut(s) 964
SaqAI TTAA 4 cut(s) 66, 84, 431, 1014
SatI GCNGC 5 cut(s) 105, 614, 773, 1039, 1074
Sau3AI GATC 1 cut(s) 598
Sau96I GGNCC 3 cut(s) 161, 309, 503
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 6 cut(s) 74, 596, 630, 695, 769, 840
SduI GDGCHC 3 cut(s) 19, 646, 964
SfaNI GCATC 1 cut(s) 970
SfuI TTCGAA 1 cut(s) 1150
SgrAI CRCCGGYG 1 cut(s) 130
SinI GGWCC 2 cut(s) 309, 503
SmiMI CAYNNNNRTG 1 cut(s) 861
Sse9I AATT 3 cut(s) 67, 804, 1152
SsiI CCGC 8 cut(s) 104, 210, 312, 360, 501, 611, 772, 883
SspMI CTAG 1 cut(s) 563
SstI GAGCTC 1 cut(s) 964
StyD4I CCNGG 6 cut(s) 72, 594, 628, 693, 767, 838
StyI CCWWGG 2 cut(s) 157, 228
TaaI ACNGT 2 cut(s) 334, 739
TaiI ACGT 7 cut(s) 103, 126, 357, 465, 929, 1083, 1161
TaqI TCGA 7 cut(s) 177, 196, 681, 756, 912, 1065, 1150
TasI AATT 3 cut(s) 67, 804, 1152
TauI GCSGC 2 cut(s) 107, 775
TfiI GAWTC 4 cut(s) 256, 420, 529, 699
Tru1I TTAA 4 cut(s) 66, 84, 431, 1014
Tru9I TTAA 4 cut(s) 66, 84, 431, 1014
TscAI CASTG 2 cut(s) 339, 1048
TseFI GTSAC 2 cut(s) 124, 274
TseI GCWGC 3 cut(s) 613, 1038, 1073
Tsp45I GTSAC 2 cut(s) 124, 274
TspDTI ATGAA 3 cut(s) 585, 590, 845
TspRI CASTG 2 cut(s) 339, 1048
VpaK11BI GGWCC 2 cut(s) 309, 503
XapI RAATTY 1 cut(s) 1152
XceI RCATGY 1 cut(s) 487
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.