Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002104

Physical Location & Seq

Genomic Coordinates Forward (+)

53752776 .. 53755713

Gene Structure 2938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCAAGCTTAAGAGCCCCGTCAAATTATTCTGAAGAACCACCTCGCCATCCAAGTCTCGTAGTAAATTCCCAGGAACCTTTCAATGCAGAGCCACCACGTTCGGCGTTGATAGCCTCTTATGTGACCCCAGTAGATTTGTTCTACAAGCGAAACCATGGACCAATTCCTGTGCTTGATGATATTGAAAGGTATCGAGTTACTATATGCGGTTTGGTAGAAAAGCCTCTGGAATTGTCAATGGCAGACATCAGGAAGCTTTCGAAGCACACTGTGACAGCAACATTGCAATGTGCAGGTAACAGGAGGACTGCAATGAGCAAAGTAAAGCCGGTGAAAGGTGTTGGGTGGGACGTTTCTGCAATTGGAAATGGAGGAAAAAGGGGGCCTTACAAGTCATCAATTCCATTACTTCAAGCCACAAATTTAGATGCAGAGGTTATCCTTGCATATGAAATGAATGGACAGCCTCTAAACAGGGATCATGGCTATCCTCTGCGAGTAATTGTTCCTGGTGTGATTGGTGCTCGATCTGTAAAATGGCTTAGTTCCATCAATATTATTGAAAATGAATGCCAGTCTGTGATTTGTTCTCTGGAGGAAGAAAATACAGTAGAGCCTGGAAAGGTATGCGATCTATTTGCAATTTTGCATCAAGCAGAATGCAGGCGACCTAGTCACCTAGTAGTCATGACTCGCCTTCATCAAATGTGCGTGCAGATTGTAGTTCATGGATATGCAGTGTCTGGAGGCGGTCGGGGGATTGAACGAGTGGATGTATCTTTCGATGGAGGCAAGACATGGGAGGAAGCAATCAGATACCAGAAGAGTACTGAAGTCCCATATGTTGCTGATGATACTAGTGGTGACAAGTGGGCATGGGTGCTGTTTAAGGCTGAAGCAGATCTCTCTCACACTACTGAAATCGTCACCAAAGCAGTTGATATAGCTGGAAATGTCCAACCCGAAAATGTGGGTGTCATCTGGAACCTGAGAGGAATACTAAACACGTCTTGGCACAGGGTCCGTGTTGAAGTCGAGGACCCTAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

351

Amino Acids

38.87

Weight (kDa)

6.38

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	53 - 124	3.7e-17	Oxidoreductase molybdopterin binding domain
Oxidored_molyb	PF00174	128 - 194	1.3e-23	Oxidoreductase molybdopterin binding domain
Mo-co_dimer	PF03404	234 - 346	3.5e-31	Mo-co oxidoreductase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01910 AT3G01910 AT3G01910
fragaria_vesca	FvH4_4g22980 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_4g23890 FvH4_6g53351 FvH4_6g53430 FvH4_6g53430 FvH4_6g53430
malus_domestica	MD09G1011300.v1.1 MD16G1118100.v1.1
prunus_persica	Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.1G227000_v2.0.a1 Prupe.3G305700_v2.0.a1
pyrus_communis	pycom111g00960
rosa_chinensis	RchiOBHm_Chr2g0136551 RchiOBHm_Chr2g0175501 RchiOBHm_Chr3g0459691 RchiOBHm_Chr4g0430531
rosa_laevigata	RLG00000006972 RLG00000022333
rosa_multiflora	Rmu_co8444955.1_g000001 Rmu_sc0000131.1_g000026 Rmu_sc0021955.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020490 Rroxscaffold_2G00077270 Rroxscaffold_5G00372290
rosa_rugosa	Rorug02G0585200 Rorug04G0243700
rosa_samantha	Rh2AG664800 Rh2BG292700 Rh2BG675600 Rh3BG098700 Rh4AG300000 Rh4BG307100 Rh4CG323700 Rh4DG304400
rosa_wichuraiana	Rw2G054490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
AciI	CCGC	2 cut(s)	210, 753
AclWI	GGATC	1 cut(s)	489
AcsI	RAATTY	2 cut(s)	67, 424
AcuI	CTGAAG	3 cut(s)	54, 855, 918
AdeI	CACNNNGTG	1 cut(s)	274
AfaI	GTAC	1 cut(s)	832
AfiI	CCNNNNNNNGG	1 cut(s)	338
AflII	CTTAAG	1 cut(s)	10
AflIII	ACRYGT	1 cut(s)	1008
AgsI	TTSAA	6 cut(s)	85, 188, 416, 566, 767, 1034
AhlI	ACTAGT	1 cut(s)	860
AjiI	CACGTC	1 cut(s)	1011
AjnI	CCWGG	3 cut(s)	72, 511, 619
AluBI	AGCT	3 cut(s)	9, 259, 950
AluI	AGCT	3 cut(s)	9, 259, 950
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	489
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	1 cut(s)	386
ApoI	RAATTY	2 cut(s)	67, 424
AspS9I	GGNCC	4 cut(s)	161, 386, 1024, 1042
AsuHPI	GGTGA	4 cut(s)	346, 671, 878, 922
AsuII	TTCGAA	1 cut(s)	263
AvaII	GGWCC	3 cut(s)	161, 1024, 1042
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	529
BccI	CCATC	3 cut(s)	57, 560, 782
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciT130I	CCWGG	3 cut(s)	74, 513, 621
BcoDI	GTCTC	1 cut(s)	62
BcuI	ACTAGT	1 cut(s)	860
BfaI	CTAG	3 cut(s)	675, 683, 861
BfrI	CTTAAG	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	287
BglII	AGATCT	1 cut(s)	904
BmcAI	AGTACT	1 cut(s)	832
Bme1390I	CCNGG	3 cut(s)	74, 513, 621
Bme18I	GGWCC	3 cut(s)	161, 1024, 1042
BmgBI	CACGTC	1 cut(s)	1011
BmgT120I	GGNCC	4 cut(s)	161, 386, 1024, 1042
BmiI	GGNNCC	5 cut(s)	78, 387, 989, 1025, 1044
BmrFI	CCNGG	3 cut(s)	74, 513, 621
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	2 cut(s)	421, 661
BmuI	ACTGGG	1 cut(s)	125
BpmI	CTGGAG	2 cut(s)	617, 768
Bpu14I	TTCGAA	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	72, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	2 cut(s)	131, 577
Bse3DI	GCAATG	3 cut(s)	284, 296, 321
BseBI	CCWGG	3 cut(s)	74, 513, 621
BseDI	CCNNGG	2 cut(s)	72, 157
BseGI	GGATG	2 cut(s)	49, 781
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMI	GCAATG	3 cut(s)	284, 296, 321
BseMII	CTCAG	1 cut(s)	983
BseNI	ACTGG	2 cut(s)	131, 577
BsgI	GTGCAG	2 cut(s)	315, 737
Bsh1285I	CGRYCG	1 cut(s)	757
BshFI	GGCC	1 cut(s)	388
BsiEI	CGRYCG	1 cut(s)	757
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	2 cut(s)	365, 824
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	2 cut(s)	365, 824
BsmI	GAATGC	2 cut(s)	578, 668
BsnI	GGCC	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	19, 529
Bsp143I	GATC	4 cut(s)	481, 530, 634, 904
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	2 cut(s)	210, 753
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	1 cut(s)	984
BspHI	TCATGA	1 cut(s)	690
BspLI	GGNNCC	5 cut(s)	78, 387, 989, 1025, 1044
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	489
BspT104I	TTCGAA	1 cut(s)	263
BspTI	CTTAAG	1 cut(s)	10
BsrDI	GCAATG	3 cut(s)	284, 296, 321
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	131, 577
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	72, 157
BssMI	GATC	4 cut(s)	481, 530, 634, 904
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	3 cut(s)	74, 513, 621
Bst4CI	ACNGT	2 cut(s)	274, 613
Bst6I	CTCTTC	1 cut(s)	821
BstAFI	CTTAAG	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	668, 716
BstDEI	CTNAG	2 cut(s)	545, 992
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	49, 781
BstKTI	GATC	4 cut(s)	484, 533, 637, 907
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	4 cut(s)	481, 530, 634, 904
BstMCI	CGRYCG	1 cut(s)	757
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 265
BstNI	CCWGG	3 cut(s)	74, 513, 621
BstSCI	CCNGG	3 cut(s)	72, 511, 619
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
BsuRI	GGCC	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	1011
BtsCI	GGATG	2 cut(s)	49, 781
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	2 cut(s)	270, 747
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	2 cut(s)	668, 716
CaiI	CAGNNNCTG	1 cut(s)	746
CciI	TCATGA	1 cut(s)	690
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	4 cut(s)	161, 386, 1024, 1042
Csp6I	GTAC	1 cut(s)	831
CviAII	CATG	6 cut(s)	158, 485, 691, 731, 801, 879
CviQI	GTAC	1 cut(s)	831
DdeI	CTNAG	2 cut(s)	545, 992
DpnI	GATC	4 cut(s)	483, 532, 636, 906
DpnII	GATC	4 cut(s)	481, 530, 634, 904
DraIII	CACNNNGTG	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	821
EarI	CTCTTC	1 cut(s)	821
Eco130I	CCWWGG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	3 cut(s)	161, 1024, 1042
Eco57I	CTGAAG	3 cut(s)	54, 855, 918
EcoO109I	RGGNCCY	2 cut(s)	386, 1042
EcoRII	CCWGG	3 cut(s)	72, 511, 619
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	6 cut(s)	161, 488, 694, 734, 804, 882
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FaqI	GGGAC	2 cut(s)	365, 824
FatI	CATG	6 cut(s)	157, 484, 690, 730, 800, 878
FauNDI	CATATG	2 cut(s)	451, 844
FokI	GGATG	2 cut(s)	36, 788
FriOI	GRGCYC	1 cut(s)	19
FspBI	CTAG	3 cut(s)	675, 683, 861
GsuI	CTGGAG	2 cut(s)	617, 768
HaeIII	GGCC	1 cut(s)	388
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	6 cut(s)	161, 488, 694, 734, 804, 882
HindIII	AAGCTT	2 cut(s)	7, 257
HinfI	GANTC	1 cut(s)	694
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	4 cut(s)	346, 671, 878, 922
Hpy188I	TCNGA	3 cut(s)	34, 818, 1055
Hpy188III	TCNNGA	6 cut(s)	230, 253, 596, 691, 747, 985
HpyAV	CCTTC	1 cut(s)	710
HpyCH4III	ACNGT	2 cut(s)	274, 613
HpyCH4IV	ACGT	3 cut(s)	100, 354, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 265
HpyF3I	CTNAG	2 cut(s)	545, 992
HpySE526I	ACGT	3 cut(s)	100, 354, 1010
Hsp92II	CATG	6 cut(s)	161, 488, 694, 734, 804, 882
Kzo9I	GATC	4 cut(s)	481, 530, 634, 904
LweI	GCATC	2 cut(s)	421, 661
MaeI	CTAG	3 cut(s)	675, 683, 861
MaeII	ACGT	3 cut(s)	100, 354, 1010
MaeIII	GTNAC	7 cut(s)	124, 199, 274, 299, 677, 866, 928
MalI	GATC	4 cut(s)	483, 532, 636, 906
MboI	GATC	4 cut(s)	481, 530, 634, 904
MboII	GAAGA	3 cut(s)	47, 614, 838
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	904
MhlI	GDGCHC	2 cut(s)	19, 529
MlyI	GAGTC	1 cut(s)	688
MmeI	TCCRAC	1 cut(s)	985
MseI	TTAA	2 cut(s)	11, 891
MslI	CAYNNNNRTG	2 cut(s)	289, 735
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	3 cut(s)	74, 513, 621
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	2 cut(s)	578, 668
MvaI	CCWGG	3 cut(s)	74, 513, 621
MwoI	GCNNNNNNNGC	2 cut(s)	113, 265
NcoI	CCATGG	1 cut(s)	157
NdeI	CATATG	2 cut(s)	451, 844
NdeII	GATC	4 cut(s)	481, 530, 634, 904
NlaIII	CATG	6 cut(s)	161, 488, 694, 734, 804, 882
NlaIV	GGNNCC	5 cut(s)	78, 387, 989, 1025, 1044
NmuCI	GTSAC	5 cut(s)	124, 274, 677, 866, 928
NspV	TTCGAA	1 cut(s)	263
PagI	TCATGA	1 cut(s)	690
PctI	GAATGC	2 cut(s)	578, 668
PflFI	GACNNNGTC	1 cut(s)	675
PleI	GAGTC	1 cut(s)	688
PpsI	GAGTC	1 cut(s)	688
PpuMI	RGGWCCY	1 cut(s)	1042
Psp5II	RGGWCCY	1 cut(s)	1042
Psp6I	CCWGG	3 cut(s)	72, 511, 619
PspGI	CCWGG	3 cut(s)	72, 511, 619
PspN4I	GGNNCC	5 cut(s)	78, 387, 989, 1025, 1044
PspPI	GGNCC	4 cut(s)	161, 386, 1024, 1042
PspPPI	RGGWCCY	1 cut(s)	1042
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	904
PsyI	GACNNNGTC	1 cut(s)	675
RsaI	GTAC	1 cut(s)	832
RsaNI	GTAC	1 cut(s)	831
RseI	CAYNNNNRTG	2 cut(s)	289, 735
SaqAI	TTAA	2 cut(s)	11, 891
Sau3AI	GATC	4 cut(s)	481, 530, 634, 904
Sau96I	GGNCC	4 cut(s)	161, 386, 1024, 1042
ScaI	AGTACT	1 cut(s)	832
SchI	GAGTC	1 cut(s)	688
ScrFI	CCNGG	3 cut(s)	74, 513, 621
SduI	GDGCHC	2 cut(s)	19, 529
SfaNI	GCATC	2 cut(s)	421, 661
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	3 cut(s)	161, 1024, 1042
SmiMI	CAYNNNNRTG	2 cut(s)	289, 735
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SpeI	ACTAGT	1 cut(s)	860
SsiI	CCGC	2 cut(s)	210, 753
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	3 cut(s)	675, 683, 861
StyD4I	CCNGG	3 cut(s)	72, 511, 619
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	274, 613
TaiI	ACGT	3 cut(s)	103, 357, 1013
TaqI	TCGA	5 cut(s)	196, 263, 529, 786, 1038
TatI	WGTACW	1 cut(s)	830
Tru1I	TTAA	2 cut(s)	11, 891
Tru9I	TTAA	2 cut(s)	11, 891
TscAI	CASTG	2 cut(s)	277, 747
TseFI	GTSAC	5 cut(s)	124, 274, 677, 866, 928
Tsp45I	GTSAC	5 cut(s)	124, 274, 677, 866, 928
TspDTI	ATGAA	5 cut(s)	468, 473, 585, 692, 719
TspGWI	ACGGA	1 cut(s)	1016
TspRI	CASTG	2 cut(s)	277, 747
Tth111I	GACNNNGTC	1 cut(s)	675
Vha464I	CTTAAG	1 cut(s)	10
VpaK11BI	GGWCC	3 cut(s)	161, 1024, 1042
XapI	RAATTY	2 cut(s)	67, 424
XspI	CTAG	3 cut(s)	675, 683, 861
ZrmI	AGTACT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.