AT3G02320

tRNA (guanine(26)-N(2))-dimethyltransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
469867 .. 473717
3851 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02320.1

Sequence Viewer

Length: 1770 bp
ATGGAAACGGATCTGAATGATTATACTGTTATCAAGGAAGGAGAAGCTGAGATTCTCATGCACAAGAAGAATCAAGTCTTCTTCAATAAAGCTCAGGTGAACAATAGAGACATGTCCATTGCTGTTCTAAGGGAATTTCTATCGAAACGCAAGCAAGAGCATGAGGCTAAGTCATCTAAAAGAACTAGACCAGCTTCCAAAGTGATTGAGAAGGATGCTTCTGAAGCTTCCAAGGAAGAAACTCCTAGCGAGAACGGTATGAATAATGGTGATCACGAAGTAGCATCTGAAGATGGACCAAGCTCTGTATCAAAAGACCCTGCTAAGACAACAGAACGATTTGCACCTAGAGAACCCAAGCCACCAAAAGTTCTTGAGGCTTTGTCAGCTTCTGGGTTACGGGCTCTAAGATATGCACGCGAAATAGAAGGAATTGGTCAGGTTGTGGCGTTGGATAATGATTTAGCATCGGTCGAAGCTTGCCAGAGAAACATAAAGTTCAATGGCTCAGTGGCTATTTCAAAGGTGGAGTCACATCATACCGATGCTCGTGTCCATATGCTTACCCACCCTAAAGAATTTGATGTGGTTGATCTTGATCCATATGGATCACCATCTATTTTCCTTGACTCGGCTATTCAATCAGTCACGGATGGTGGATTGCTAATGTGTACAGCAACTGACATGGCAGTGTTATGTGGTGGTAACGGTGAAGTTTGCTATTCCAAATATGGTTCTTACCCATTGAGAGCGAAGTATTGTCATGAGATGGCTTTGCGGATCCTCCTTGCCAGCATCGAGAGCCATGCAAACCGCTACAAGCGGTATATTGTTCCGGTGCTATCTGTGCAAATGGATTTCTATGTTCGTGTTTTTGTCCGCGTTTACACCTCGGCGAGTGCAATGAAGAACACTCCATTGAAGCTCTCTTACGTATATCAATGCATTGGCTGTGATTCATTTCATCTTCAACCTGTTGGAAGATCTCTCCCTAAGAACAACAGTGTGAGGTATCTACCAGCAATTGGTCCGGTTGTGAAGCAGGATTGCAACCACTGTGGGAAGAAATATAACATGGGTGGACCAATATGGTCTGCTCCAATGCATGATCCAGAATGGGTGACTTCGATATTAAACAGTGTGAAATCCATGAAAGACAGATATCCTGCTTATGACCGGATCTCTGCTGTACTTACTACAGTCTCCGAGGAATTGCTGGATGTTCCTCTGTTTTTGAGTCTGCATAATCTTTGTGCGACACTAAAGTGTATTTCACCATCAGCTGCAATGTTTCGATCAGCGGTTATTAATGCTAATTACCGTATCTCTGGGACTCATGTGAATCCGCTCGGCATGAAAACTGATGCTCCTATGGAGGTTATCTGGGACATTATGCGCTGCTGGGTGAAGAATCATCCCATAAAGGCGCAATCGCCTGAACAACCCGGTAGTGTGATCTTGTCCAAAGAACCATCACATGAGGTTGATTTTTCGCGTCACATTGGTTCGCTGAGCAAGGCACAGGCAAAGAAAGTAGCTCGTTTTCTGCCAAATCCAGAGAAGCATTGGGGTCCAAAGCTTAGGGCTGGTCGCCAGATTACGAGCAAACATGTATCTCTTATTGGTCATGAAGCAGTCAATGGTCATCTTAGCCAACACCATGAAGAACTTAAAGAAGAAGATGAAGAAGCAGAGCCAGAAGATAATGTCCAAGACAAGGTTGATCCAAAACGCCAGAAGACAGCAACAGATAATATTACCTCAACATAA

Protein Analysis

589

Amino Acids

65.6

Weight (kDa)

7.62

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRM PF02005 11 - 466 1.1e-115 N2,N2-dimethylguanosine tRNA methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1025
AccBSI CCGCTC 1 cut(s) 1348
AccII CGCG 3 cut(s) 420, 882, 1495
AciI CCGC 6 cut(s) 778, 814, 823, 880, 1301, 1346
AclWI GGATC 8 cut(s) 18, 593, 616, 775, 788, 1103, 1187, 1718
AcsI RAATTY 2 cut(s) 134, 578
AcuI CTGAAG 2 cut(s) 243, 309
AfaI GTAC 2 cut(s) 673, 1191
AfiI CCNNNNNNNGG 3 cut(s) 631, 1025, 1717
AflIII ACRYGT 2 cut(s) 111, 1609
AgsI TTSAA 6 cut(s) 85, 502, 522, 641, 922, 971
AleI CACNNNNGTG 1 cut(s) 1264
Alw26I GTCTC 2 cut(s) 102, 1207
AlwI GGATC 8 cut(s) 18, 593, 616, 775, 788, 1103, 1187, 1718
AlwNI CAGNNNCTG 2 cut(s) 392, 680
ApeKI GCWGC 2 cut(s) 1283, 1398
ApoI RAATTY 2 cut(s) 134, 578
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AseI ATTAAT 1 cut(s) 1308
AspLEI GCGC 2 cut(s) 1398, 1429
AspS9I GGNCC 4 cut(s) 296, 1028, 1082, 1571
AsuC2I CCSGG 1 cut(s) 1446
AsuHPI GGTGA 7 cut(s) 109, 281, 603, 722, 1132, 1266, 1417
AvaII GGWCC 4 cut(s) 296, 1028, 1082, 1571
BamHI GGATCC 1 cut(s) 780
BanII GRGCYC 1 cut(s) 406
BarI GAAGNNNNNNTAC 2 cut(s) 914, 946
BauI CACGAG 1 cut(s) 549
BbsI GAAGAC 2 cut(s) 70, 1745
BbvI GCAGC 2 cut(s) 1270, 1385
BccI CCATC 6 cut(s) 287, 622, 647, 763, 1285, 1480
BcgI CGANNNNNNTGC 2 cut(s) 788, 822
BclI TGATCA 1 cut(s) 271
BcnI CCSGG 1 cut(s) 1446
BcoDI GTCTC 2 cut(s) 102, 1207
BfaI CTAG 3 cut(s) 186, 246, 348
BfmI CTRYAG 1 cut(s) 1197
BglII AGATCT 1 cut(s) 983
BisI GCNGC 2 cut(s) 1284, 1399
BlpI GCTNAGC 1 cut(s) 1511
BlsI GCNGC 2 cut(s) 1285, 1400
Bme1390I CCNGG 1 cut(s) 1446
Bme18I GGWCC 4 cut(s) 296, 1028, 1082, 1571
BmgT120I GGNCC 4 cut(s) 296, 1028, 1082, 1571
BmiI GGNNCC 2 cut(s) 782, 1572
BmrFI CCNGG 1 cut(s) 1446
BmsI GCATC 6 cut(s) 205, 293, 476, 535, 804, 1354
BpiI GAAGAC 2 cut(s) 70, 1745
Bpu10I CCTNAGC 2 cut(s) 93, 1580
Bpu1102I GCTNAGC 1 cut(s) 1511
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 1446
BsaAI YACGTR 1 cut(s) 934
BsaBI GATNNNNATC 2 cut(s) 597, 613
BsaJI CCNNGG 3 cut(s) 231, 891, 1206
BsaWI WCCGGW 3 cut(s) 835, 1030, 1176
BsaXI ACNNNNNCTCC 2 cut(s) 1351, 1381
Bsc4I CCNNNNNNNGG 3 cut(s) 631, 1025, 1717
Bse3DI GCAATG 3 cut(s) 117, 909, 1293
Bse8I GATNNNNATC 2 cut(s) 597, 613
BseDI CCNNGG 3 cut(s) 231, 891, 1206
BseGI GGATG 4 cut(s) 220, 658, 1225, 1414
BseJI GATNNNNATC 2 cut(s) 597, 613
BseLI CCNNNNNNNGG 3 cut(s) 631, 1025, 1717
BseMI GCAATG 3 cut(s) 117, 909, 1293
BseMII CTCAG 4 cut(s) 39, 107, 522, 1502
BseXI GCAGC 2 cut(s) 1270, 1385
BseYI CCCAGC 1 cut(s) 1401
Bsh1236I CGCG 3 cut(s) 420, 882, 1495
Bsh1285I CGRYCG 1 cut(s) 474
BsiEI CGRYCG 1 cut(s) 474
BsiSI CCGG 4 cut(s) 836, 1031, 1177, 1446
BslFI GGGAC 2 cut(s) 1345, 1400
BslI CCNNNNNNNGG 3 cut(s) 631, 1025, 1717
BsmAI GTCTC 2 cut(s) 102, 1207
BsmFI GGGAC 2 cut(s) 1345, 1400
Bsp1286I GDGCHC 1 cut(s) 406
Bsp1407I TGTACA 1 cut(s) 671
Bsp1720I GCTNAGC 1 cut(s) 1511
BspACI CCGC 6 cut(s) 778, 814, 823, 880, 1301, 1346
BspCNI CTCAG 4 cut(s) 40, 106, 521, 1503
BspFNI CGCG 3 cut(s) 420, 882, 1495
BspHI TCATGA 2 cut(s) 763, 1627
BspLI GGNNCC 2 cut(s) 782, 1572
BspPI GGATC 8 cut(s) 18, 593, 616, 775, 788, 1103, 1187, 1718
BsrBI CCGCTC 1 cut(s) 1348
BsrDI GCAATG 3 cut(s) 117, 909, 1293
BsrGI TGTACA 1 cut(s) 671
BssECI CCNNGG 3 cut(s) 231, 891, 1206
BssSI CACGAG 1 cut(s) 549
BssT1I CCWWGG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 549
Bst4CI ACNGT 8 cut(s) 28, 257, 710, 1004, 1058, 1139, 1201, 1322
BstAUI TGTACA 1 cut(s) 671
BstBAI YACGTR 1 cut(s) 934
BstC8I GCNNGC 4 cut(s) 152, 418, 481, 793
BstF5I GGATG 4 cut(s) 220, 658, 1225, 1414
BstFNI CGCG 3 cut(s) 420, 882, 1495
BstHHI GCGC 2 cut(s) 1398, 1429
BstMAI GTCTC 2 cut(s) 102, 1207
BstMCI CGRYCG 1 cut(s) 474
BstMWI GCNNNNNNNGC 4 cut(s) 224, 386, 801, 847
BstNSI RCATGY 2 cut(s) 115, 1613
BstSCI CCNGG 1 cut(s) 1444
BstSFI CTRYAG 1 cut(s) 1197
BstSNI TACGTA 1 cut(s) 934
BstUI CGCG 3 cut(s) 420, 882, 1495
BstV1I GCAGC 2 cut(s) 1270, 1385
BstV2I GAAGAC 2 cut(s) 70, 1745
BstX2I RGATCY 4 cut(s) 10, 780, 983, 1179
BstYI RGATCY 4 cut(s) 10, 780, 983, 1179
BtsCI GGATG 4 cut(s) 220, 658, 1225, 1414
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 5 cut(s) 516, 696, 1009, 1054, 1144
Cac8I GCNNGC 4 cut(s) 152, 418, 481, 793
CaiI CAGNNNCTG 2 cut(s) 392, 680
CciI TCATGA 2 cut(s) 763, 1627
CfoI GCGC 2 cut(s) 1398, 1429
Cfr13I GGNCC 4 cut(s) 296, 1028, 1082, 1571
CseI GACGC 1 cut(s) 1484
Csp6I GTAC 2 cut(s) 672, 1190
CspCI CAANNNNNGTGG 2 cut(s) 1039, 1074
CviQI GTAC 2 cut(s) 672, 1190
Eco105I TACGTA 1 cut(s) 934
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 406
Eco32I GATATC 1 cut(s) 1163
Eco47I GGWCC 4 cut(s) 296, 1028, 1082, 1571
Eco57I CTGAAG 2 cut(s) 243, 309
EcoRV GATATC 1 cut(s) 1163
EcoT14I CCWWGG 1 cut(s) 231
EcoT22I ATGCAT 2 cut(s) 947, 1107
EcoT38I GRGCYC 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 231
FaqI GGGAC 2 cut(s) 1345, 1400
FauNDI CATATG 2 cut(s) 558, 604
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 1284, 1399
FokI GGATG 4 cut(s) 227, 665, 1232, 1401
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 2 cut(s) 1284, 1399
FspBI CTAG 3 cut(s) 186, 246, 348
GlaI GCGC 2 cut(s) 1397, 1428
GluI GCNGC 2 cut(s) 1284, 1399
GsaI CCCAGC 1 cut(s) 1405
HapII CCGG 4 cut(s) 836, 1031, 1177, 1446
HgaI GACGC 1 cut(s) 1484
HhaI GCGC 2 cut(s) 1398, 1429
Hin6I GCGC 2 cut(s) 1396, 1427
HinP1I GCGC 2 cut(s) 1396, 1427
HindIII AAGCTT 3 cut(s) 225, 477, 1577
HinfI GANTC 9 cut(s) 52, 70, 530, 629, 956, 1237, 1333, 1342, 1411
HpaII CCGG 4 cut(s) 836, 1031, 1177, 1446
HphI GGTGA 7 cut(s) 109, 281, 603, 722, 1132, 1266, 1417
Hpy166II GTNNAC 4 cut(s) 100, 672, 886, 1082
Hpy188I TCNGA 4 cut(s) 15, 223, 289, 1207
Hpy188III TCNNGA 8 cut(s) 275, 374, 596, 764, 799, 1112, 1556, 1628
Hpy8I GTNNAC 4 cut(s) 100, 672, 886, 1082
HpyAV CCTTC 3 cut(s) 32, 205, 422
HpyCH4III ACNGT 8 cut(s) 28, 257, 710, 1004, 1058, 1139, 1201, 1322
HpyCH4IV ACGT 1 cut(s) 933
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 386, 801, 847
HpySE526I ACGT 1 cut(s) 933
HspAI GCGC 2 cut(s) 1396, 1427
Ksp22I TGATCA 1 cut(s) 271
LmnI GCTCC 2 cut(s) 1102, 1372
Lsp1109I GCAGC 2 cut(s) 1270, 1385
LweI GCATC 6 cut(s) 205, 293, 476, 535, 804, 1354
MaeI CTAG 3 cut(s) 186, 246, 348
MaeII ACGT 1 cut(s) 933
MaeIII GTNAC 6 cut(s) 396, 531, 646, 704, 1120, 1496
MbiI CCGCTC 1 cut(s) 1348
MfeI CAATTG 1 cut(s) 1023
MflI RGATCY 4 cut(s) 10, 780, 983, 1179
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 6 cut(s) 134, 432, 578, 1023, 1211, 1315
MlyI GAGTC 4 cut(s) 539, 623, 1246, 1327
MmeI TCCRAC 2 cut(s) 432, 958
MnlI CCTC 9 cut(s) 157, 370, 794, 901, 1002, 1201, 1236, 1369, 1474
Mph1103I ATGCAT 2 cut(s) 947, 1107
MseI TTAA 3 cut(s) 1133, 1308, 1671
MslI CAYNNNNRTG 3 cut(s) 543, 689, 1264
MspA1I CMGCKG 2 cut(s) 1283, 1301
MspI CCGG 4 cut(s) 836, 1031, 1177, 1446
MspR9I CCNGG 1 cut(s) 1446
MunI CAATTG 1 cut(s) 1023
MvnI CGCG 3 cut(s) 420, 882, 1495
MwoI GCNNNNNNNGC 4 cut(s) 224, 386, 801, 847
NciI CCSGG 1 cut(s) 1446
NdeI CATATG 2 cut(s) 558, 604
NlaIV GGNNCC 2 cut(s) 782, 1572
NmeAIII GCCGAG 3 cut(s) 611, 872, 1329
NmuCI GTSAC 4 cut(s) 531, 646, 1120, 1496
NsiI ATGCAT 2 cut(s) 947, 1107
NspI RCATGY 2 cut(s) 115, 1613
OliI CACNNNNGTG 1 cut(s) 1264
PagI TCATGA 2 cut(s) 763, 1627
PciI ACATGT 2 cut(s) 111, 1609
PfeI GAWTC 5 cut(s) 52, 70, 956, 1342, 1411
PflMI CCANNNNNTGG 1 cut(s) 1025
PkrI GCNGC 2 cut(s) 1285, 1400
PleI GAGTC 4 cut(s) 538, 623, 1245, 1327
PpsI GAGTC 4 cut(s) 538, 623, 1245, 1327
Ppu21I YACGTR 1 cut(s) 934
PscI ACATGT 2 cut(s) 111, 1609
PshBI ATTAAT 1 cut(s) 1308
PspFI CCCAGC 1 cut(s) 1401
PspN4I GGNNCC 2 cut(s) 782, 1572
PspPI GGNCC 4 cut(s) 296, 1028, 1082, 1571
PstNI CAGNNNCTG 2 cut(s) 392, 680
PsuI RGATCY 4 cut(s) 10, 780, 983, 1179
PvuII CAGCTG 1 cut(s) 1283
RsaI GTAC 2 cut(s) 673, 1191
RsaNI GTAC 2 cut(s) 672, 1190
RseI CAYNNNNRTG 3 cut(s) 543, 689, 1264
SaqAI TTAA 3 cut(s) 1133, 1308, 1671
SatI GCNGC 2 cut(s) 1284, 1399
Sau96I GGNCC 4 cut(s) 296, 1028, 1082, 1571
SchI GAGTC 4 cut(s) 539, 623, 1246, 1327
ScrFI CCNGG 1 cut(s) 1446
SduI GDGCHC 1 cut(s) 406
SfaNI GCATC 6 cut(s) 205, 293, 476, 535, 804, 1354
SfcI CTRYAG 1 cut(s) 1197
SinI GGWCC 4 cut(s) 296, 1028, 1082, 1571
SmiMI CAYNNNNRTG 3 cut(s) 543, 689, 1264
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
SnaBI TACGTA 1 cut(s) 934
Sse9I AATT 6 cut(s) 134, 432, 578, 1023, 1211, 1315
SsiI CCGC 6 cut(s) 778, 814, 823, 880, 1301, 1346
SspI AATATT 1 cut(s) 1756
SspMI CTAG 3 cut(s) 186, 246, 348
StyD4I CCNGG 1 cut(s) 1444
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 8 cut(s) 28, 257, 710, 1004, 1058, 1139, 1201, 1322
TaiI ACGT 1 cut(s) 936
TaqI TCGA 5 cut(s) 143, 474, 798, 1127, 1294
TaqII GACCGA 1 cut(s) 460
TasI AATT 6 cut(s) 134, 432, 578, 1023, 1211, 1315
TatI WGTACW 2 cut(s) 671, 1189
TfiI GAWTC 5 cut(s) 52, 70, 956, 1342, 1411
Tru1I TTAA 3 cut(s) 1133, 1308, 1671
Tru9I TTAA 3 cut(s) 1133, 1308, 1671
TscAI CASTG 5 cut(s) 516, 696, 1009, 1061, 1144
TseFI GTSAC 4 cut(s) 531, 646, 1120, 1496
TseI GCWGC 2 cut(s) 1283, 1398
Tsp45I GTSAC 4 cut(s) 531, 646, 1120, 1496
TspDTI ATGAA 9 cut(s) 275, 920, 948, 953, 1166, 1370, 1644, 1677, 1698
TspGWI ACGGA 2 cut(s) 23, 665
TspRI CASTG 5 cut(s) 516, 696, 1009, 1061, 1144
Van91I CCANNNNNTGG 1 cut(s) 1025
VpaK11BI GGWCC 4 cut(s) 296, 1028, 1082, 1571
VspI ATTAAT 1 cut(s) 1308
XapI RAATTY 2 cut(s) 134, 578
XceI RCATGY 2 cut(s) 115, 1613
XcmI CCANNNNNNNNNTGG 1 cut(s) 1563
XspI CTAG 3 cut(s) 186, 246, 348
Zsp2I ATGCAT 2 cut(s) 947, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.