Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Reverse (-)

5793600 .. 5809592

Gene Structure 15993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCCCCGTGTATTTTACTTGACATGTAGCGAGACTAGAGGGATATCACTAATATCGGTATCAAAGATTGGGTTCGCTACCCAACACCCTCTCGCACGCGCAACTCCCCTCAACAAACAATACACGGCCAAACGGAGGTCTATCTTAGCCGGGGAGTGGGGGACTCCCCGGGGCCTAGCAGGGGCCCACCCGAAAGGGTATAAAGTGTTTGTTCGTGCACGAAATCGGCCGGTGAAATTTTTCCAGAAAATTCAAAACCCTAGATTCGGGTTTCTCCTTGATTCTCCCTCTACGATGCAAATTGGAGTTAATGGTGTTAGAGGAATTGTCACCGGGGACCGCGCCGAATCGGAAGAAATTGTCGGATTTAGTCAAATGGAACAGTCGGGCATTTGGGCTTCGATCTCATTTTTTCCGACCAAAACACCACCACCCATGGCCACGGCCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.51

Weight (kDa)

10.76

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	99, 342
AciI	CCGC	1 cut(s)	340
AcoI	YGGCCR	4 cut(s)	126, 227, 438, 444
AcsI	RAATTY	2 cut(s)	236, 249
AfiI	CCNNNNNNNGG	4 cut(s)	135, 156, 181, 266
AflIII	ACRYGT	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	254
AleI	CACNNNNGTG	1 cut(s)	446
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	26
Alw44I	GTGCAC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	6 cut(s)	126, 172, 183, 227, 438, 444
ApaI	GGGCCC	1 cut(s)	187
ApaLI	GTGCAC	1 cut(s)	216
ApoI	RAATTY	2 cut(s)	236, 249
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	101, 344
AspS9I	GGNCC	4 cut(s)	172, 183, 184, 337
AsuC2I	CCSGG	4 cut(s)	151, 169, 170, 334
AsuHPI	GGTGA	2 cut(s)	244, 322
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	2 cut(s)	187, 220
BalI	TGGCCA	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	220
BceAI	ACGGC	2 cut(s)	141, 431
BcnI	CCSGG	4 cut(s)	151, 169, 170, 334
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	3 cut(s)	36, 176, 261
Bme1390I	CCNGG	4 cut(s)	151, 169, 170, 334
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	4 cut(s)	172, 183, 184, 337
BmiI	GGNNCC	4 cut(s)	173, 184, 185, 338
BmrFI	CCNGG	4 cut(s)	151, 169, 170, 334
BmsI	GCATC	1 cut(s)	285
BpuMI	CCSGG	4 cut(s)	151, 169, 170, 334
BsaJI	CCNNGG	7 cut(s)	150, 167, 168, 169, 333, 435, 441
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 156, 181, 266
Bse118I	RCCGGY	1 cut(s)	229
BseDI	CCNNGG	7 cut(s)	150, 167, 168, 169, 333, 435, 441
BseLI	CCNNNNNNNGG	4 cut(s)	135, 156, 181, 266
BseSI	GKGCMC	2 cut(s)	187, 220
BseX3I	CGGCCG	2 cut(s)	227, 444
Bsh1236I	CGCG	2 cut(s)	99, 342
Bsh1285I	CGRYCG	2 cut(s)	230, 447
BshFI	GGCC	6 cut(s)	128, 174, 185, 229, 440, 446
BsiEI	CGRYCG	2 cut(s)	230, 447
BsiHKAI	GWGCWC	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	4 cut(s)	150, 169, 230, 333
BslFI	GGGAC	2 cut(s)	175, 350
BslI	CCNNNNNNNGG	4 cut(s)	135, 156, 181, 266
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	175, 350
BsnI	GGCC	6 cut(s)	128, 174, 185, 229, 440, 446
BsoBI	CYCGRG	1 cut(s)	168
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	187, 220
Bsp143I	GATC	1 cut(s)	402
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	6 cut(s)	128, 174, 185, 229, 440, 446
BspFNI	CGCG	2 cut(s)	99, 342
BspLI	GGNNCC	4 cut(s)	173, 184, 185, 338
BsrFI	RCCGGY	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	7 cut(s)	150, 167, 168, 169, 333, 435, 441
BssMI	GATC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	2 cut(s)	435, 441
BstFNI	CGCG	2 cut(s)	99, 342
BstHHI	GCGC	2 cut(s)	101, 344
BstKTI	GATC	1 cut(s)	405
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	402
BstMCI	CGRYCG	2 cut(s)	230, 447
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	4 cut(s)	149, 167, 168, 332
BstSLI	GKGCMC	2 cut(s)	187, 220
BstUI	CGCG	2 cut(s)	99, 342
BstZI	CGGCCG	2 cut(s)	227, 444
BsuRI	GGCC	6 cut(s)	128, 174, 185, 229, 440, 446
BtgI	CCRYGG	2 cut(s)	435, 441
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	2 cut(s)	101, 344
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	4 cut(s)	172, 183, 184, 337
Cfr9I	CCCGGG	1 cut(s)	168
CviAII	CATG	2 cut(s)	24, 436
CviJI	RGCY	8 cut(s)	128, 149, 174, 185, 229, 398, 440, 446
CviKI_1	RGCY	8 cut(s)	128, 149, 174, 185, 229, 398, 440, 446
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
EaeI	YGGCCR	4 cut(s)	126, 227, 438, 444
EagI	CGGCCG	2 cut(s)	227, 444
EclXI	CGGCCG	2 cut(s)	227, 444
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	337
Eco52I	CGGCCG	2 cut(s)	227, 444
Eco88I	CYCGRG	1 cut(s)	168
EcoO109I	RGGNCCY	2 cut(s)	172, 183
EcoRV	GATATC	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	2 cut(s)	27, 439
FaiI	YATR	3 cut(s)	25, 201, 437
FaqI	GGGAC	2 cut(s)	175, 350
FatI	CATG	2 cut(s)	23, 435
FriOI	GRGCYC	1 cut(s)	187
FspBI	CTAG	3 cut(s)	36, 176, 261
GlaI	GCGC	2 cut(s)	100, 343
HaeIII	GGCC	6 cut(s)	128, 174, 185, 229, 440, 446
HapII	CCGG	4 cut(s)	150, 169, 230, 333
HhaI	GCGC	2 cut(s)	101, 344
Hin1II	CATG	2 cut(s)	27, 439
Hin6I	GCGC	2 cut(s)	99, 342
HinP1I	GCGC	2 cut(s)	99, 342
HinfI	GANTC	4 cut(s)	163, 264, 281, 347
HpaII	CCGG	4 cut(s)	150, 169, 230, 333
HphI	GGTGA	2 cut(s)	244, 322
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	352, 365, 417
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4V	TGCA	2 cut(s)	218, 298
HpyF3I	CTNAG	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	27, 439
HspAI	GCGC	2 cut(s)	99, 342
Kzo9I	GATC	1 cut(s)	402
LpnPI	CCDG	6 cut(s)	163, 165, 182, 243, 257, 346
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	3 cut(s)	36, 176, 261
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	1 cut(s)	404
MboI	GATC	1 cut(s)	402
MboII	GAAGA	1 cut(s)	365
MhlI	GDGCHC	2 cut(s)	187, 220
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	5 cut(s)	236, 249, 300, 324, 357
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	2 cut(s)	343, 440
MnlI	CCTC	6 cut(s)	32, 99, 119, 129, 298, 314
Mox20I	TGGCCA	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	440
MspI	CCGG	4 cut(s)	150, 169, 230, 333
MspR9I	CCNGG	4 cut(s)	151, 169, 170, 334
MvnI	CGCG	2 cut(s)	99, 342
NciI	CCSGG	4 cut(s)	151, 169, 170, 334
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	1 cut(s)	402
NlaIII	CATG	2 cut(s)	27, 439
NlaIV	GGNNCC	4 cut(s)	173, 184, 185, 338
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	27
OliI	CACNNNNGTG	1 cut(s)	446
PciI	ACATGT	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	264, 281, 347
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PscI	ACATGT	1 cut(s)	23
PspN4I	GGNNCC	4 cut(s)	173, 184, 185, 338
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	4 cut(s)	172, 183, 184, 337
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	402
Sau96I	GGNCC	4 cut(s)	172, 183, 184, 337
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	4 cut(s)	151, 169, 170, 334
SduI	GDGCHC	2 cut(s)	187, 220
SetI	ASST	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	285
SinI	GGWCC	1 cut(s)	337
SmaI	CCCGGG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	446
Sse9I	AATT	5 cut(s)	236, 249, 300, 324, 357
SsiI	CCGC	1 cut(s)	340
SspMI	CTAG	3 cut(s)	36, 176, 261
StyD4I	CCNGG	4 cut(s)	149, 167, 168, 332
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	401
TasI	AATT	5 cut(s)	236, 249, 300, 324, 357
TfiI	GAWTC	3 cut(s)	264, 281, 347
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	328
TspGWI	ACGGA	1 cut(s)	148
TspMI	CCCGGG	1 cut(s)	168
VneI	GTGCAC	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	2 cut(s)	236, 249
XceI	RCATGY	1 cut(s)	27
XmaI	CCCGGG	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	3 cut(s)	36, 176, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.