Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Reverse (-)

55337492 .. 55339510

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGATCCTCCGGGATAAGGGGGACACATCAACACGCCTTCGACGACGCCTTGATCAGCACGTTGACCCCCTCCACTTAGGTATCAAAGATTGGGCTCGCTACCCAACACCCTCTCGCTCAGCGCAGCTCCCCTTAACAAACAATACACCGGCCAAAAGGAGGTCTATCTTAGCCGGGGAGTGGGGGACTCCCGGGGGCCTATCGGGGGCCCACCCGAAAGGGTATAAAGTGTTTGCTCGCAAGTCCATGGTTGACAACGAAGTTGTTGAGATAAAGAGAACTGCTAAAACAGGAAATGAGCATCTTGAGAGGCTTGTGATACTTTTGCTATCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.61

Weight (kDa)

10.32

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	46
AfiI	CCNNNNNNNGG	4 cut(s)	16, 159, 180, 205
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	3 cut(s)	150, 196, 207
ApaI	GGGCCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	3 cut(s)	196, 207, 208
AsuC2I	CCSGG	4 cut(s)	11, 175, 192, 193
AvaI	CYCGRG	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	211
BaeI	ACNNNNGTAYC	2 cut(s)	64, 97
BanII	GRGCYC	2 cut(s)	97, 211
BbvI	GCAGC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	4 cut(s)	11, 175, 192, 193
BisI	GCNGC	1 cut(s)	125
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	4 cut(s)	11, 175, 192, 193
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	3 cut(s)	196, 207, 208
BmiI	GGNNCC	3 cut(s)	197, 208, 209
BmrFI	CCNGG	4 cut(s)	11, 175, 192, 193
BmsI	GCATC	1 cut(s)	310
Bpu1102I	GCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	4 cut(s)	11, 175, 192, 193
BsaHI	GRCGYC	1 cut(s)	46
BsaJI	CCNNGG	4 cut(s)	174, 191, 192, 246
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 159, 180, 205
Bse118I	RCCGGY	1 cut(s)	148
BseDI	CCNNGG	4 cut(s)	174, 191, 192, 246
BseLI	CCNNNNNNNGG	4 cut(s)	16, 159, 180, 205
BseMII	CTCAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	3 cut(s)	152, 198, 209
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	4 cut(s)	10, 149, 174, 192
BslFI	GGGAC	2 cut(s)	35, 199
BslI	CCNNNNNNNGG	4 cut(s)	16, 159, 180, 205
BsmFI	GGGAC	2 cut(s)	35, 199
BsnI	GGCC	3 cut(s)	152, 198, 209
BsoBI	CYCGRG	1 cut(s)	191
Bsp120I	GGGCCC	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	97, 211
Bsp143I	GATC	2 cut(s)	3, 52
Bsp1720I	GCTNAGC	1 cut(s)	118
Bsp19I	CCATGG	1 cut(s)	246
BspANI	GGCC	3 cut(s)	152, 198, 209
BspCNI	CTCAG	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	197, 208, 209
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	4 cut(s)	174, 191, 192, 246
BssMI	GATC	2 cut(s)	3, 52
BssNI	GRCGYC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	97, 238
BstDEI	CTNAG	3 cut(s)	76, 118, 169
BstDSI	CCRYGG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	2 cut(s)	6, 55
BstMBI	GATC	2 cut(s)	3, 52
BstSCI	CCNGG	4 cut(s)	9, 173, 190, 191
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	152, 198, 209
BtgI	CCRYGG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	97, 238
CfoI	GCGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	196, 207, 208
Cfr9I	CCCGGG	1 cut(s)	191
CseI	GACGC	1 cut(s)	54
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	7 cut(s)	95, 127, 152, 173, 198, 209, 313
CviKI_1	RGCY	7 cut(s)	95, 127, 152, 173, 198, 209, 313
DdeI	CTNAG	3 cut(s)	76, 118, 169
DpnI	GATC	2 cut(s)	5, 54
DpnII	GATC	2 cut(s)	3, 52
EaeI	YGGCCR	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	2 cut(s)	97, 211
Eco88I	CYCGRG	1 cut(s)	191
EcoO109I	RGGNCCY	2 cut(s)	196, 207
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	2 cut(s)	97, 211
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	1 cut(s)	250
FaiI	YATR	2 cut(s)	225, 248
FaqI	GGGAC	2 cut(s)	35, 199
FatI	CATG	1 cut(s)	246
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	125
FriOI	GRGCYC	2 cut(s)	97, 211
Fsp4HI	GCNGC	1 cut(s)	125
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	152, 198, 209
HapII	CCGG	4 cut(s)	10, 149, 174, 192
HgaI	GACGC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	2 cut(s)	64, 253
HindII	GTYRAC	2 cut(s)	64, 253
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	4 cut(s)	10, 149, 174, 192
Hpy166II	GTNNAC	2 cut(s)	64, 253
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	2 cut(s)	64, 253
Hpy99I	CGWCG	2 cut(s)	45, 48
HpyAV	CCTTC	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	60
HpyF3I	CTNAG	3 cut(s)	76, 118, 169
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	3, 52
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	5 cut(s)	23, 162, 187, 205, 276
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	310
MaeII	ACGT	1 cut(s)	60
MalI	GATC	2 cut(s)	5, 54
MboI	GATC	2 cut(s)	3, 52
MhlI	GDGCHC	2 cut(s)	97, 211
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	17, 80, 121, 153, 303
MseI	TTAA	1 cut(s)	134
MspI	CCGG	4 cut(s)	10, 149, 174, 192
MspR9I	CCNGG	4 cut(s)	11, 175, 192, 193
NciI	CCSGG	4 cut(s)	11, 175, 192, 193
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	2 cut(s)	3, 52
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	3 cut(s)	197, 208, 209
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspN4I	GGNNCC	3 cut(s)	197, 208, 209
PspOMI	GGGCCC	1 cut(s)	207
PspPI	GGNCC	3 cut(s)	196, 207, 208
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	2 cut(s)	3, 52
Sau96I	GGNCC	3 cut(s)	196, 207, 208
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	4 cut(s)	11, 175, 192, 193
SduI	GDGCHC	2 cut(s)	97, 211
SetI	ASST	4 cut(s)	63, 82, 129, 164
SfaNI	GCATC	1 cut(s)	310
SmaI	CCCGGG	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
StyD4I	CCNGG	4 cut(s)	9, 173, 190, 191
StyI	CCWWGG	1 cut(s)	246
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseI	GCWGC	1 cut(s)	124
TspMI	CCCGGG	1 cut(s)	191
XmaI	CCCGGG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.