Rroxscaffold_5G00359260

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001945
Physical Location & Seq
Reverse (-)
39332753 .. 39336451
3699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359260.1

Sequence Viewer

Length: 639 bp
ATGGAGTTGGGTCTGCCGGGGTTGAGTTGGCAACTGCGGGCCGTGCCGCACCTTTTTCTTCCTTTGGCTTGTGCAGCTATTGTGGCAAAGAATATTACTGCTGTAACGTCAACATCAACTCGTACACCAATTTTTAAAGCAATTGCTAAAGGAGGAAATAATGGGGATCCGACGACTAAGGGAGAATGTGTGGGCAATGAGAACCTCCGCCGGTACACCTCCGCTAGCGGAACTTTTCATCTCGCAAACAAGTCTCCGCCGAGCGCAACACCGCTCCCCGGGCTGGTCCCGGCGGCACCGCTGTCCGTTTTCTATCGGCGGAGGGACTTCCGCCAACGGAGTTTCCCAGGCAACGCCCCATCCAAAAGACGATCGCCACGCGGCATTACGGTCATCCTACGTCCCTCGGGGACACGGGGACAAGTCAACAGCCTACGATGGCCCGGATCGGGCATGTTGACCACCGCCACTCGGGTACCAAAGATTGGGTTCGCTACCCAACACCCTTTGCTCGGCGCAGCTCCTCTCAACAAACAATACACCGTCCAAAAGGAGGTCTATCTTAGCCGGGGAGTGGGGGACAGCTTGGAGGGCCTAGCGAGGGCCCACCCGAAAGGGTATAAAGCGTTTGTTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

212

Amino Acids

22.77

Weight (kDa)

11.38

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 14 - 65 1.9e-07 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 475
AccB1I GGYRCC 2 cut(s) 295, 475
AccB7I CCANNNNNTGG 1 cut(s) 485
AccBSI CCGCTC 1 cut(s) 274
AccII CGCG 1 cut(s) 381
AclWI GGATC 3 cut(s) 161, 174, 454
AfaI GTAC 3 cut(s) 124, 215, 477
AfiI CCNNNNNNNGG 9 cut(s) 278, 283, 449, 471, 485, 512, 553, 574, 601
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 3 cut(s) 77, 521, 585
AluI AGCT 3 cut(s) 77, 521, 585
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 3 cut(s) 161, 174, 454
Ama87I CYCGRG 3 cut(s) 278, 406, 471
AoxI GGCC 4 cut(s) 39, 440, 592, 603
ApaI GGGCCC 1 cut(s) 607
ApeKI GCWGC 2 cut(s) 74, 518
Asp718I GGTACC 1 cut(s) 475
AspLEI GCGC 2 cut(s) 266, 518
AspS9I GGNCC 6 cut(s) 39, 286, 441, 592, 603, 604
AsuC2I CCSGG 6 cut(s) 18, 279, 280, 290, 444, 569
AsuNHI GCTAGC 1 cut(s) 224
AvaI CYCGRG 3 cut(s) 278, 406, 471
AvaII GGWCC 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 607
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BamHI GGATCC 1 cut(s) 166
BanI GGYRCC 2 cut(s) 295, 475
BanII GRGCYC 1 cut(s) 607
BbvI GCAGC 2 cut(s) 86, 530
BccI CCATC 2 cut(s) 367, 432
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 348
BcnI CCSGG 6 cut(s) 18, 279, 280, 290, 444, 569
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 2 cut(s) 225, 596
BisI GCNGC 5 cut(s) 47, 75, 294, 382, 519
BlsI GCNGC 5 cut(s) 48, 76, 295, 383, 520
Bme1390I CCNGG 7 cut(s) 18, 279, 280, 290, 348, 444, 569
Bme18I GGWCC 1 cut(s) 286
BmeT110I CYCGRG 3 cut(s) 278, 406, 471
BmgT120I GGNCC 6 cut(s) 39, 286, 441, 592, 603, 604
BmiI GGNNCC 5 cut(s) 168, 288, 297, 477, 605
BmrFI CCNGG 7 cut(s) 18, 279, 280, 290, 348, 444, 569
BmtI GCTAGC 1 cut(s) 228
BpuMI CCSGG 6 cut(s) 18, 279, 280, 290, 444, 569
BsaJI CCNNGG 6 cut(s) 17, 277, 278, 346, 405, 568
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 9 cut(s) 278, 283, 449, 471, 485, 512, 553, 574, 601
Bse118I RCCGGY 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 6 cut(s) 17, 277, 278, 346, 405, 568
BseGI GGATG 2 cut(s) 359, 393
BseLI CCNNNNNNNGG 9 cut(s) 278, 283, 449, 471, 485, 512, 553, 574, 601
BseMI GCAATG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 513
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 2 cut(s) 86, 530
BsgI GTGCAG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 374
BshFI GGCC 4 cut(s) 41, 442, 594, 605
BshNI GGYRCC 2 cut(s) 295, 475
BsiEI CGRYCG 1 cut(s) 374
BsiHKCI CYCGRG 3 cut(s) 278, 406, 471
BsiSI CCGG 6 cut(s) 17, 211, 279, 290, 444, 568
BslFI GGGAC 6 cut(s) 272, 338, 387, 424, 432, 593
BslI CCNNNNNNNGG 9 cut(s) 278, 283, 449, 471, 485, 512, 553, 574, 601
BsmAI GTCTC 1 cut(s) 258
BsmFI GGGAC 6 cut(s) 272, 338, 387, 424, 432, 593
BsnI GGCC 4 cut(s) 41, 442, 594, 605
BsoBI CYCGRG 3 cut(s) 278, 406, 471
Bsp120I GGGCCC 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 607
Bsp143I GATC 3 cut(s) 166, 371, 446
BspANI GGCC 4 cut(s) 41, 442, 594, 605
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 5 cut(s) 168, 288, 297, 477, 605
BspOI GCTAGC 1 cut(s) 228
BspPI GGATC 3 cut(s) 161, 174, 454
BspT107I GGYRCC 2 cut(s) 295, 475
BsrBI CCGCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 6 cut(s) 17, 277, 278, 346, 405, 568
BssMI GATC 3 cut(s) 166, 371, 446
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 391, 544
BstC8I GCNNGC 2 cut(s) 39, 226
BstDEI CTNAG 2 cut(s) 177, 563
BstF5I GGATG 2 cut(s) 359, 393
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 2 cut(s) 266, 518
BstKTI GATC 3 cut(s) 169, 374, 449
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 3 cut(s) 166, 371, 446
BstMCI CGRYCG 1 cut(s) 374
BstMWI GCNNNNNNNGC 5 cut(s) 43, 74, 83, 280, 591
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 7 cut(s) 16, 277, 278, 288, 346, 442, 567
BstSLI GKGCMC 1 cut(s) 607
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 86, 530
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 4 cut(s) 41, 442, 594, 605
BtsCI GGATG 2 cut(s) 359, 393
Cac8I GCNNGC 2 cut(s) 39, 226
CfoI GCGC 2 cut(s) 266, 518
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 6 cut(s) 39, 286, 441, 592, 603, 604
Cfr9I CCCGGG 1 cut(s) 278
Csp6I GTAC 3 cut(s) 123, 214, 476
CviAII CATG 1 cut(s) 454
CviQI GTAC 3 cut(s) 123, 214, 476
DdeI CTNAG 2 cut(s) 177, 563
DpnI GATC 3 cut(s) 168, 373, 448
DpnII GATC 3 cut(s) 166, 371, 446
DraI TTTAAA 1 cut(s) 136
EciI GGCGGA 4 cut(s) 197, 246, 320, 334
Eco24I GRGCYC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 286
Eco88I CYCGRG 3 cut(s) 278, 406, 471
EcoO109I RGGNCCY 2 cut(s) 592, 603
EcoRII CCWGG 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 607
FaeI CATG 1 cut(s) 457
FaiI YATR 2 cut(s) 455, 621
FaqI GGGAC 6 cut(s) 272, 338, 387, 424, 432, 593
FatI CATG 1 cut(s) 453
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 5 cut(s) 47, 75, 294, 382, 519
FokI GGATG 2 cut(s) 346, 380
FriOI GRGCYC 1 cut(s) 607
Fsp4HI GCNGC 5 cut(s) 47, 75, 294, 382, 519
FspBI CTAG 2 cut(s) 225, 596
GlaI GCGC 2 cut(s) 265, 517
GluI GCNGC 5 cut(s) 47, 75, 294, 382, 519
HaeIII GGCC 4 cut(s) 41, 442, 594, 605
HapII CCGG 6 cut(s) 17, 211, 279, 290, 444, 568
HhaI GCGC 2 cut(s) 266, 518
Hin1II CATG 1 cut(s) 457
Hin6I GCGC 2 cut(s) 264, 516
HinP1I GCGC 2 cut(s) 264, 516
HincII GTYRAC 3 cut(s) 111, 427, 459
HindII GTYRAC 3 cut(s) 111, 427, 459
HpaII CCGG 6 cut(s) 17, 211, 279, 290, 444, 568
Hpy166II GTNNAC 5 cut(s) 111, 125, 216, 427, 459
Hpy188I TCNGA 1 cut(s) 171
Hpy8I GTNNAC 5 cut(s) 111, 125, 216, 427, 459
Hpy99I CGWCG 1 cut(s) 175
HpyCH4III ACNGT 2 cut(s) 391, 544
HpyCH4IV ACGT 2 cut(s) 107, 400
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 74, 83, 280, 591
HpyF3I CTNAG 2 cut(s) 177, 563
HpySE526I ACGT 2 cut(s) 107, 400
Hsp92II CATG 1 cut(s) 457
HspAI GCGC 2 cut(s) 264, 516
KpnI GGTACC 1 cut(s) 479
Kzo9I GATC 3 cut(s) 166, 371, 446
LmnI GCTCC 2 cut(s) 279, 526
LpnPI CCDG 9 cut(s) 30, 224, 269, 292, 303, 333, 360, 457, 581
Lsp1109I GCAGC 2 cut(s) 86, 530
MaeI CTAG 2 cut(s) 225, 596
MaeII ACGT 2 cut(s) 107, 400
MaeIII GTNAC 1 cut(s) 103
MalI GATC 3 cut(s) 168, 373, 448
MbiI CCGCTC 1 cut(s) 274
MboI GATC 3 cut(s) 166, 371, 446
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 607
MluCI AATT 2 cut(s) 129, 141
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 9 cut(s) 146, 215, 229, 315, 415, 534, 547, 583, 594
MseI TTAA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 6 cut(s) 17, 211, 279, 290, 444, 568
MspR9I CCNGG 7 cut(s) 18, 279, 280, 290, 348, 444, 569
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 5 cut(s) 43, 74, 83, 280, 591
NciI CCSGG 6 cut(s) 18, 279, 280, 290, 444, 569
NdeII GATC 3 cut(s) 166, 371, 446
NheI GCTAGC 1 cut(s) 224
NlaIII CATG 1 cut(s) 457
NlaIV GGNNCC 5 cut(s) 168, 288, 297, 477, 605
NmeAIII GCCGAG 2 cut(s) 285, 492
NspI RCATGY 1 cut(s) 457
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 5 cut(s) 48, 76, 295, 383, 520
Ple19I CGATCG 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 5 cut(s) 168, 288, 297, 477, 605
PspOMI GGGCCC 1 cut(s) 603
PspPI GGNCC 6 cut(s) 39, 286, 441, 592, 603, 604
PsuI RGATCY 1 cut(s) 166
PvuI CGATCG 1 cut(s) 374
RsaI GTAC 3 cut(s) 124, 215, 477
RsaNI GTAC 3 cut(s) 123, 214, 476
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 5 cut(s) 47, 75, 294, 382, 519
Sau3AI GATC 3 cut(s) 166, 371, 446
Sau96I GGNCC 6 cut(s) 39, 286, 441, 592, 603, 604
ScrFI CCNGG 7 cut(s) 18, 279, 280, 290, 348, 444, 569
SduI GDGCHC 1 cut(s) 607
SetI ASST 9 cut(s) 54, 79, 110, 207, 221, 403, 523, 558, 587
SinI GGWCC 1 cut(s) 286
SmaI CCCGGG 1 cut(s) 280
Sse9I AATT 2 cut(s) 129, 141
SspI AATATT 1 cut(s) 94
SspMI CTAG 2 cut(s) 225, 596
StyD4I CCNGG 7 cut(s) 16, 277, 278, 288, 346, 442, 567
TaaI ACNGT 2 cut(s) 391, 544
TaiI ACGT 2 cut(s) 110, 403
TasI AATT 2 cut(s) 129, 141
TauI GCSGC 3 cut(s) 49, 296, 384
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 2 cut(s) 74, 518
TspDTI ATGAA 1 cut(s) 227
TspGWI ACGGA 2 cut(s) 295, 352
TspMI CCCGGG 1 cut(s) 278
Van91I CCANNNNNTGG 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 286
XceI RCATGY 1 cut(s) 457
XmaI CCCGGG 1 cut(s) 278
XspI CTAG 2 cut(s) 225, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.