RLG00000008503

Arsenical pump-driving

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001945
Physical Location & Seq
Forward (+)
31410331 .. 31411515
1185 bp
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UTR
Exon/CDS
Intron
RLM00000008503

Sequence Viewer

Length: 366 bp
ATGTTCTTGATTATACCTCCTGGTTTGGATGAAGCTATTGTGATTTCTAAGGTGATACAATTTCTCGAATCACCAGAATATAACATGTTTACTCGTATCGTCTTTGATACTGCACCCACGGGCCATACCTTGCGACTTTTATCCTTGCCAGACTTCTTGGATGCATCAATTGGCAAGATATTGAAGTCAGACAAATTAGAGAAATTACGGGAGAGGATGATTAAAGTGCGTGAGCTTTTTCGTGATACCGATTCCACAGAATTTGTCATAGTAACAATACCCACGTCAGTGCAAGAGAATGATAACTATGCTGCAATGAGAGAAAAGCCCAAAGATTCTCCAAGTGGAAGCATAGCAAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArsA_ATPase

Protein Analysis

122

Amino Acids

13.7

Weight (kDa)

5.42

Isoelectric Point (pI)

24.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArsA_ATPase PF02374 5 - 73 4.1e-15 Anion-transporting ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 1 cut(s) 184
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 1 cut(s) 19
AleI CACNNNNGTG 1 cut(s) 287
AluBI AGCT 2 cut(s) 35, 235
AluI AGCT 2 cut(s) 35, 235
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 2 cut(s) 63, 64
BbvI GCAGC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 21
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 21
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 2 cut(s) 151, 173
BsaJI CCNNGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 3 cut(s) 34, 166, 222
BseMI GCAATG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 298
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 123
BsnI GGCC 1 cut(s) 123
BspANI GGCC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 34, 166, 222
BstNI CCWGG 1 cut(s) 21
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 298
BsuRI GGCC 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 285
BtsCI GGATG 3 cut(s) 34, 166, 222
BtsIMutI CAGTG 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 121
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 1 cut(s) 85
CviJI RGCY 5 cut(s) 35, 123, 235, 328, 362
CviKI_1 RGCY 5 cut(s) 35, 123, 235, 328, 362
DdeI CTNAG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 166
FaeI CATG 1 cut(s) 88
FaiI YATR 7 cut(s) 14, 81, 86, 126, 269, 309, 353
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 3 cut(s) 41, 173, 229
Fsp4HI GCNGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 312
HaeIII GGCC 1 cut(s) 123
Hin1II CATG 1 cut(s) 88
HinfI GANTC 3 cut(s) 68, 251, 335
HphI GGTGA 2 cut(s) 63, 64
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 3 cut(s) 7, 65, 242
Hpy8I GTNNAC 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 4 cut(s) 113, 164, 292, 314
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 1 cut(s) 88
LpnPI CCDG 4 cut(s) 6, 33, 87, 162
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 2 cut(s) 151, 173
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 271
MfeI CAATTG 1 cut(s) 168
MluCI AATT 5 cut(s) 59, 168, 194, 203, 260
MnlI CCTC 2 cut(s) 27, 207
Mph1103I ATGCAT 1 cut(s) 166
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 21
NlaIII CATG 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 166
NspI RCATGY 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 287
PciI ACATGT 1 cut(s) 84
PfeI GAWTC 3 cut(s) 68, 251, 335
PkrI GCNGC 1 cut(s) 313
PscI ACATGT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspPI GGNCC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 21
SetI ASST 6 cut(s) 19, 37, 54, 131, 237, 287
SfaNI GCATC 2 cut(s) 151, 173
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 5 cut(s) 59, 168, 194, 203, 260
StyD4I CCNGG 1 cut(s) 19
TaiI ACGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 66
TasI AATT 5 cut(s) 59, 168, 194, 203, 260
TfiI GAWTC 3 cut(s) 68, 251, 335
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 294
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 1 cut(s) 294
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 88
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.