Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Forward (+)

94935587 .. 94939550

Gene Structure 3964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGATGGTGGCCTCCGGCAAGATACGCCGACCTCCACCATGGCGAGGGCAATGGGAAATTAGGTAAAGATTACATGAAGTGGAGATGGCAACCCCAAGATTATGAAATTCCAAGACTTAAAGTTGAGTACTTTTGGTGTGGACTGTGTGTTGATCTTGATCCTTATGGTTCTCCTTCCGTCTTCTTGGATTCTGCGATTCAAGCTGTTGCTGATGGAGGCATGCTCATGTGTACCGCAACGGATATGCCAGTACTATGTGCTGGTAATGGGGAGGTGATACAATTTCTCGAATCACCAGAATATAACATGTTTACTCGTATCGTCTTTGATACTGCACCCATGGGCCATACCTTGCGACTTTTATCCTTGCCAGACTTCTTGGATGCATCAATTGGCAAGATATTGAAGTCAGACAAATTAGAGAAATTACGGGAGAGGATGATTAAAGTGCTTACTTTAAAGTCGGTGCAAGAGAATGATAACTGTGCTGCAATGAGAGAAAAGCCCAAAGATTCTCCAAGTGGAAGCATAGCAAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArsA_ATPase

Protein Analysis

181

Amino Acids

20.38

Weight (kDa)

5.63

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM	PF02005	50 - 89	1.6e-13	N2,N2-dimethylguanosine tRNA methyltransferase
ArsA_ATPase	PF02374	93 - 169	1.3e-12	Anion-transporting ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	108
AfaI	GTAC	3 cut(s)	131, 235, 255
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	203, 409
AluBI	AGCT	2 cut(s)	206, 542
AluI	AGCT	2 cut(s)	206, 542
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	2 cut(s)	11, 346
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	288, 289
BbsI	GAAGAC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	2 cut(s)	81, 209
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
BmcAI	AGTACT	2 cut(s)	131, 255
BmgT120I	GGNCC	1 cut(s)	346
BmsI	GCATC	2 cut(s)	376, 398
BpiI	GAAGAC	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	40, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	2 cut(s)	58, 501
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	40, 342
BseGI	GGATG	3 cut(s)	11, 391, 447
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	2 cut(s)	58, 501
BseNI	ACTGG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	478
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	13, 348
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	46
BsnI	GGCC	2 cut(s)	13, 348
Bsp143I	GATC	2 cut(s)	154, 160
Bsp19I	CCATGG	2 cut(s)	40, 342
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	13, 348
BspPI	GGATC	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	58, 501
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	40, 342
BssMI	GATC	2 cut(s)	154, 160
BssT1I	CCWWGG	2 cut(s)	40, 342
Bst4CI	ACNGT	2 cut(s)	147, 488
BstC8I	GCNNGC	1 cut(s)	224
BstDSI	CCRYGG	2 cut(s)	40, 342
BstF5I	GGATG	3 cut(s)	11, 391, 447
BstKTI	GATC	2 cut(s)	157, 163
BstMBI	GATC	2 cut(s)	154, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 203
BstNSI	RCATGY	2 cut(s)	226, 313
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	13, 348
BtgI	CCRYGG	2 cut(s)	40, 342
BtsCI	GGATG	3 cut(s)	11, 391, 447
Cac8I	GCNNGC	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	346
Csp6I	GTAC	3 cut(s)	130, 234, 254
CviAII	CATG	6 cut(s)	41, 76, 223, 229, 310, 343
CviJI	RGCY	5 cut(s)	13, 206, 348, 508, 542
CviKI_1	RGCY	5 cut(s)	13, 206, 348, 508, 542
CviQI	GTAC	3 cut(s)	130, 234, 254
DpnI	GATC	2 cut(s)	156, 162
DpnII	GATC	2 cut(s)	154, 160
DraI	TTTAAA	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	40, 342
EcoT14I	CCWWGG	2 cut(s)	40, 342
EcoT22I	ATGCAT	1 cut(s)	391
ErhI	CCWWGG	2 cut(s)	40, 342
FaeI	CATG	6 cut(s)	44, 79, 226, 232, 313, 346
FatI	CATG	6 cut(s)	40, 75, 222, 228, 309, 342
Fnu4HI	GCNGC	1 cut(s)	492
FokI	GGATG	3 cut(s)	18, 398, 454
Fsp4HI	GCNGC	1 cut(s)	492
GluI	GCNGC	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	13, 348
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	6 cut(s)	44, 79, 226, 232, 313, 346
HinfI	GANTC	4 cut(s)	191, 199, 293, 515
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	2 cut(s)	288, 289
Hpy166II	GTNNAC	3 cut(s)	143, 234, 315
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	2 cut(s)	158, 290
Hpy8I	GTNNAC	3 cut(s)	143, 234, 315
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	2 cut(s)	147, 488
HpyCH4V	TGCA	4 cut(s)	338, 389, 472, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 203
Hsp92II	CATG	6 cut(s)	44, 79, 226, 232, 313, 346
Kzo9I	GATC	2 cut(s)	154, 160
LpnPI	CCDG	5 cut(s)	30, 249, 264, 312, 387
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	2 cut(s)	376, 398
MalI	GATC	2 cut(s)	156, 162
MboI	GATC	2 cut(s)	154, 160
MboII	GAAGA	1 cut(s)	175
MfeI	CAATTG	1 cut(s)	393
MluCI	AATT	6 cut(s)	59, 108, 284, 393, 419, 428
MnlI	CCTC	6 cut(s)	24, 40, 44, 212, 268, 432
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	4 cut(s)	120, 447, 461, 544
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	26, 203
NcoI	CCATGG	2 cut(s)	40, 342
NdeII	GATC	2 cut(s)	154, 160
NlaIII	CATG	6 cut(s)	44, 79, 226, 232, 313, 346
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	2 cut(s)	226, 313
PaeI	GCATGC	1 cut(s)	226
PciI	ACATGT	1 cut(s)	309
PfeI	GAWTC	4 cut(s)	191, 199, 293, 515
PkrI	GCNGC	1 cut(s)	493
PscI	ACATGT	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	346
RsaI	GTAC	3 cut(s)	131, 235, 255
RsaNI	GTAC	3 cut(s)	130, 234, 254
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	4 cut(s)	120, 447, 461, 544
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	2 cut(s)	154, 160
Sau96I	GGNCC	1 cut(s)	346
ScaI	AGTACT	2 cut(s)	131, 255
SetI	ASST	6 cut(s)	36, 67, 208, 279, 356, 544
SfaNI	GCATC	2 cut(s)	376, 398
SmiMI	CAYNNNNRTG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	226
Sse9I	AATT	6 cut(s)	59, 108, 284, 393, 419, 428
SsiI	CCGC	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	40, 342
TaaI	ACNGT	2 cut(s)	147, 488
TaqI	TCGA	1 cut(s)	291
TasI	AATT	6 cut(s)	59, 108, 284, 393, 419, 428
TatI	WGTACW	2 cut(s)	129, 253
TfiI	GAWTC	4 cut(s)	191, 199, 293, 515
Tru1I	TTAA	4 cut(s)	120, 447, 461, 544
Tru9I	TTAA	4 cut(s)	120, 447, 461, 544
TseI	GCWGC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	92, 120
TspGWI	ACGGA	2 cut(s)	169, 257
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	2 cut(s)	226, 313
ZrmI	AGTACT	2 cut(s)	131, 255
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.