Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Reverse (-)

64264700 .. 64266084

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0512100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAAGAATTTGAAGGCTTTCAATTTGCTAGGGCTTCTGTTTGCCCTTGTTCTCATCTCTTCCGCTGTCACAGCTGATGAGAAATCCAAAGAGGAGAATAAAGCTGTAGTGGATGGGGCAACAAAGGAGACGAATCCGGTGCCAGTTGATGACGTAAAACAAGGTCCAGGGGGAGGATATTGCGGGCGCTGCTGCTGGAAACATGGCTACCATTATTGTGGTAGTCAGTGTTGTTGGCCTGAGAAAGAAGAAACAGAAGCTGTAGGCGAGGCCGCCGCTGATGCCAACCCTGATGGATATGGCTGGGGAGGCGGACGAGGTGGCGGTGGCTGGGGAGGTGGAAGAGGTGGCGGTGGCGGACGAGGAGGAGGTGGTGGCTGGGGAGGAGGAGGCAGTGCAGCAGCTTATGAAGCCAACCCTGATGGATATGGCTGGGGAGGGGGACGAGGAGGCGGACGAGGTGGAGGTGGCTGGGGAGGCGGACGAGGTGGAGGTGGTTGGGGAGGGGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002940 GO:0003674 GO:0003824 GO:0004809 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM

Protein Analysis

171

Amino Acids

16.7

Weight (kDa)

6.11

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	13, 22
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	4 cut(s)	74, 104, 260, 404
AluI	AGCT	4 cut(s)	74, 104, 260, 404
Alw26I	GTCTC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	236, 270
ApeKI	GCWGC	4 cut(s)	189, 192, 398, 401
ApoI	RAATTY	1 cut(s)	7
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	139
BbvI	GCAGC	4 cut(s)	176, 179, 410, 413
BccI	CCATC	3 cut(s)	107, 287, 416
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	2 cut(s)	105, 261
BfoI	RGCGCY	1 cut(s)	190
BisI	GCNGC	6 cut(s)	190, 193, 273, 276, 399, 402
BlsI	GCNGC	6 cut(s)	191, 194, 274, 277, 400, 403
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	6 cut(s)	107, 378, 381, 399, 402, 462
BseXI	GCAGC	4 cut(s)	176, 179, 410, 413
BseYI	CCCAGC	5 cut(s)	303, 330, 378, 432, 471
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	2 cut(s)	238, 272
BshNI	GGYRCC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	2 cut(s)	238, 272
BspANI	GGCC	2 cut(s)	238, 272
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	168
Bst6I	CTCTTC	2 cut(s)	64, 337
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 189, 281, 309, 410, 477
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	2 cut(s)	105, 261
BstV1I	GCAGC	4 cut(s)	176, 179, 410, 413
BstXI	CCANNNNNNTGG	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	238, 272
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	233, 400
Cac8I	GCNNGC	1 cut(s)	185
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	164
CviAII	CATG	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	64, 337
EarI	CTCTTC	2 cut(s)	64, 337
EciI	GGCGGA	4 cut(s)	327, 372, 468, 495
Eco47I	GGWCC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	204, 300, 408, 429
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	1 cut(s)	202
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	6 cut(s)	190, 193, 273, 276, 399, 402
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	6 cut(s)	190, 193, 273, 276, 399, 402
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	6 cut(s)	190, 193, 273, 276, 399, 402
GsaI	CCCAGC	5 cut(s)	307, 334, 382, 436, 475
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	238, 272
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 189, 281, 309, 410, 477
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	187
Lsp1109I	GCAGC	4 cut(s)	176, 179, 410, 413
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	67, 509
MboII	GAAGA	4 cut(s)	16, 51, 260, 354
MluCI	AATT	2 cut(s)	7, 22
MroXI	GAANNNNTTC	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	3 cut(s)	65, 74, 278
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	6 cut(s)	71, 189, 281, 309, 410, 477
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	6 cut(s)	191, 194, 274, 277, 400, 403
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	5 cut(s)	303, 330, 378, 432, 471
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	6 cut(s)	190, 193, 273, 276, 399, 402
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	168
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	2 cut(s)	105, 261
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	7, 22
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	166
TaiI	ACGT	1 cut(s)	156
TasI	AATT	2 cut(s)	7, 22
TauI	GCSGC	2 cut(s)	275, 278
TfiI	GAWTC	1 cut(s)	133
TscAI	CASTG	2 cut(s)	233, 400
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	4 cut(s)	189, 192, 398, 401
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	17, 423
TspRI	CASTG	2 cut(s)	233, 400
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	7
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.