Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Reverse (-)

4674939 .. 4677480

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g06500.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTGTACAGCAACTGATATGGCAGTGCTATGTGGTGGAAATGGGGAGGTTTGCTATTCAAAATATGGTTCCTATCCATTGAGAGGGAAGTATTGTCACGAAATGGCTTTGAGGATCCTCCTAGCTTGCATTGAGAGTCATGCAAATCGTTACAAACGGTACATTGTTCCTGTGCTATCTGTTCAGATGGACTTTTATGTTCGAGTTTTCGTCCGTATCTACTCTTCTGCAAGTGCAATGAAGAACTCTCCCCTTAAGCTATCCTATGTTTATCAGTGCATTGGCTGCGATTCATTTCATCTTCAGCCTATTGGAAGGACAGTCACAAAGAACACCAGTGTAAGATATCTACCGGGTTTTGGTCCCGTTGTTCCTCAAGAATGCAGTGACTGTGGGAAGAAATTCAATATGGGTGGACCTATATGGTCTGCTCCTATCCATGATCAAGAATGGGTGACTTCCATACTATCTGATGTGAAATCTATGAAGGAGCGGTATCCCGCTTATGGTCGCATCTCTGCTGTACTAACAACAATTTCAGAGGAACTGCCTGATGTTCCTTTGTTCTTGAGTCTGCACAACCTCTGTGCCACATTAAAGTGCACTTCCCCATCTGCTGTGATTTTCCGTTCTGCTGTGATCAATGCAGGGTATCGTATATCTGGAACTCACGTAAACCCATTGGGGTTGAAATCAGATGCTCCCATGGATGTCATTTGGGACATAATGCGCTGTTGGGTGAAGAATCACCCGGTGAAACCTCAGCCAGCGGATCAGTCAGGAACCGTGATACTTGCCAAGGAACCCATCCTTCAAGCTAACTTTGCTCGAGCTGTTGCGTCTCTTAGCAAGGCACAAACCAAGAAGGTAGCACGCTTCCTTCCAAATCCAGAAAGGCACTGGGGGCCAAAGCTTAGGGCAGGTCGTACAATCACCAGCAAACACATCTCTCTCTTGGGTCCGGAGGCTGTCAATGGACATCTTAACCATGAAGATGGTGAGGAGCATGATGCCAAGCGTCAAAAGATTGAAGATCAACCCGCCCCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002940 GO:0003674 GO:0003824 GO:0004809 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM

Protein Analysis

351

Amino Acids

38.84

Weight (kDa)

9.17

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	911
AccBSI	CCGCTC	1 cut(s)	493
AccIII	TCCGGA	1 cut(s)	961
AciI	CCGC	4 cut(s)	493, 501, 770, 1041
AclWI	GGATC	3 cut(s)	109, 122, 780
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	754
AfaI	GTAC	4 cut(s)	7, 161, 525, 928
AfiI	CCNNNNNNNGG	3 cut(s)	83, 359, 506
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	5 cut(s)	60, 406, 691, 815, 1031
AluBI	AGCT	5 cut(s)	125, 259, 818, 833, 913
AluI	AGCT	5 cut(s)	125, 259, 818, 833, 913
Alw21I	GWGCWC	1 cut(s)	605
Alw26I	GTCTC	1 cut(s)	846
Alw44I	GTGCAC	1 cut(s)	601
AlwI	GGATC	3 cut(s)	109, 122, 780
AlwNI	CAGNNNCTG	2 cut(s)	14, 390
Ama87I	CYCGRG	1 cut(s)	828
Aor13HI	TCCGGA	1 cut(s)	961
AoxI	GGCC	1 cut(s)	905
ApaLI	GTGCAC	1 cut(s)	601
ApeKI	GCWGC	1 cut(s)	285
ApoI	RAATTY	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	732
AspS9I	GGNCC	4 cut(s)	362, 416, 905, 959
AsuC2I	CCSGG	2 cut(s)	354, 752
AsuHPI	GGTGA	6 cut(s)	466, 740, 751, 766, 925, 1010
AvaI	CYCGRG	1 cut(s)	828
AvaII	GGWCC	3 cut(s)	362, 416, 959
BaeGI	GKGCMC	1 cut(s)	605
BamHI	GGATCC	1 cut(s)	114
BarI	GAAGNNNNNNTAC	2 cut(s)	208, 240
Bbv12I	GWGCWC	1 cut(s)	605
BbvCI	CCTCAGC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	4 cut(s)	181, 619, 815, 989
BciVI	GTATCC	1 cut(s)	507
BclI	TGATCA	2 cut(s)	442, 639
BcnI	CCSGG	2 cut(s)	354, 752
BcoDI	GTCTC	1 cut(s)	846
BfaI	CTAG	1 cut(s)	122
BfrI	CTTAAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	911
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	354, 752
Bme18I	GGWCC	3 cut(s)	362, 416, 959
BmeT110I	CYCGRG	1 cut(s)	828
BmgT120I	GGNCC	4 cut(s)	362, 416, 905, 959
BmiI	GGNNCC	7 cut(s)	70, 116, 364, 784, 804, 906, 960
BmrFI	CCNGG	2 cut(s)	354, 752
BmrI	ACTGGG	1 cut(s)	910
BmsI	GCATC	3 cut(s)	522, 688, 1000
BmuI	ACTGGG	1 cut(s)	910
Bpu10I	CCTNAGC	2 cut(s)	762, 914
BpuEI	CTTGAG	2 cut(s)	360, 589
BpuMI	CCSGG	2 cut(s)	354, 752
BsaAI	YACGTR	1 cut(s)	673
BsaJI	CCNNGG	2 cut(s)	705, 798
BsaWI	WCCGGW	1 cut(s)	961
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 359, 506
Bse1I	ACTGG	2 cut(s)	336, 905
Bse3DI	GCAATG	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	961
BseDI	CCNNGG	2 cut(s)	705, 798
BseGI	GGATG	2 cut(s)	715, 807
BseLI	CCNNNNNNNGG	3 cut(s)	83, 359, 506
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	776
BseNI	ACTGG	2 cut(s)	336, 905
BseRI	GAGGAG	1 cut(s)	1016
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	560
BshFI	GGCC	1 cut(s)	907
BsiHKAI	GWGCWC	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	828
BsiSI	CCGG	3 cut(s)	353, 752, 962
BslFI	GGGAC	2 cut(s)	348, 734
BslI	CCNNNNNNNGG	3 cut(s)	83, 359, 506
BsmAI	GTCTC	1 cut(s)	846
BsmBI	CGTCTC	1 cut(s)	846
BsmFI	GGGAC	2 cut(s)	348, 734
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	907
BsoBI	CYCGRG	1 cut(s)	828
Bsp1286I	GDGCHC	1 cut(s)	605
Bsp13I	TCCGGA	1 cut(s)	961
Bsp1407I	TGTACA	1 cut(s)	5
Bsp143I	GATC	5 cut(s)	114, 442, 639, 772, 1033
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	4 cut(s)	493, 501, 770, 1041
BspANI	GGCC	1 cut(s)	907
BspCNI	CTCAG	1 cut(s)	775
BspEI	TCCGGA	1 cut(s)	961
BspLI	GGNNCC	7 cut(s)	70, 116, 364, 784, 804, 906, 960
BspMI	ACCTGC	1 cut(s)	911
BspPI	GGATC	3 cut(s)	109, 122, 780
BspTI	CTTAAG	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	243
BsrGI	TGTACA	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	336, 905
BssECI	CCNNGG	2 cut(s)	705, 798
BssMI	GATC	5 cut(s)	114, 442, 639, 772, 1033
BssT1I	CCWWGG	2 cut(s)	705, 798
Bst4CI	ACNGT	4 cut(s)	159, 322, 392, 787
Bst6I	CTCTTC	1 cut(s)	229
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	673
BstC8I	GCNNGC	3 cut(s)	127, 768, 874
BstDEI	CTNAG	3 cut(s)	762, 845, 914
BstDSI	CCRYGG	1 cut(s)	705
BstF5I	GGATG	2 cut(s)	715, 807
BstHHI	GCGC	1 cut(s)	732
BstKTI	GATC	5 cut(s)	117, 445, 642, 775, 1036
BstMAI	GTCTC	1 cut(s)	846
BstMBI	GATC	5 cut(s)	114, 442, 639, 772, 1033
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 824, 904
BstSCI	CCNGG	2 cut(s)	352, 750
BstSLI	GKGCMC	1 cut(s)	605
BstV1I	GCAGC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	995
BstYI	RGATCY	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	907
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	2 cut(s)	715, 807
BtsI	GCAGTG	2 cut(s)	30, 391
BtsIMutI	CAGTG	5 cut(s)	30, 281, 343, 391, 898
BveI	ACCTGC	1 cut(s)	911
Cac8I	GCNNGC	3 cut(s)	127, 768, 874
CaiI	CAGNNNCTG	2 cut(s)	14, 390
CfoI	GCGC	1 cut(s)	732
Cfr13I	GGNCC	4 cut(s)	362, 416, 905, 959
CseI	GACGC	2 cut(s)	828, 1007
Csp6I	GTAC	4 cut(s)	6, 160, 524, 927
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	5 cut(s)	140, 440, 706, 989, 1007
CviQI	GTAC	4 cut(s)	6, 160, 524, 927
DdeI	CTNAG	3 cut(s)	762, 845, 914
DpnI	GATC	5 cut(s)	116, 444, 641, 774, 1035
DpnII	GATC	5 cut(s)	114, 442, 639, 772, 1033
DraIII	CACNNNGTG	1 cut(s)	754
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	705, 798
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	3 cut(s)	362, 416, 959
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	828
EcoRV	GATATC	1 cut(s)	347
EcoT14I	CCWWGG	2 cut(s)	705, 798
ErhI	CCWWGG	2 cut(s)	705, 798
Esp3I	CGTCTC	1 cut(s)	846
FaeI	CATG	5 cut(s)	143, 443, 709, 992, 1010
FaqI	GGGAC	2 cut(s)	348, 734
FatI	CATG	5 cut(s)	139, 439, 705, 988, 1006
FauI	CCCGC	2 cut(s)	508, 1048
FbaI	TGATCA	2 cut(s)	442, 639
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	2 cut(s)	722, 794
Fsp4HI	GCNGC	1 cut(s)	286
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	731
GluI	GCNGC	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	907
HapII	CCGG	3 cut(s)	353, 752, 962
HgaI	GACGC	2 cut(s)	828, 1007
HhaI	GCGC	1 cut(s)	732
Hin1II	CATG	5 cut(s)	143, 443, 709, 992, 1010
Hin6I	GCGC	1 cut(s)	730
HinP1I	GCGC	1 cut(s)	730
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	4 cut(s)	136, 290, 571, 745
HpaII	CCGG	3 cut(s)	353, 752, 962
HphI	GGTGA	6 cut(s)	466, 740, 751, 766, 925, 1010
Hpy166II	GTNNAC	4 cut(s)	6, 416, 603, 676
Hpy188I	TCNGA	4 cut(s)	186, 472, 541, 697
Hpy188III	TCNNGA	8 cut(s)	98, 377, 446, 568, 663, 780, 890, 962
Hpy8I	GTNNAC	4 cut(s)	6, 416, 603, 676
HpyAV	CCTTC	5 cut(s)	309, 481, 821, 859, 890
HpyCH4III	ACNGT	4 cut(s)	159, 322, 392, 787
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	9 cut(s)	129, 143, 230, 236, 279, 384, 577, 603, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 824, 904
HpyF3I	CTNAG	3 cut(s)	762, 845, 914
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	5 cut(s)	143, 443, 709, 992, 1010
HspAI	GCGC	1 cut(s)	730
Kpn2I	TCCGGA	1 cut(s)	961
Ksp22I	TGATCA	2 cut(s)	442, 639
Kzo9I	GATC	5 cut(s)	114, 442, 639, 772, 1033
LmnI	GCTCC	4 cut(s)	436, 490, 706, 1003
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	3 cut(s)	522, 688, 1000
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	5 cut(s)	95, 149, 322, 386, 454
MalI	GATC	5 cut(s)	116, 444, 641, 774, 1035
MbiI	CCGCTC	1 cut(s)	493
MboI	GATC	5 cut(s)	114, 442, 639, 772, 1033
MboII	GAAGA	7 cut(s)	216, 253, 293, 409, 754, 1004, 1043
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	605
MluCI	AATT	2 cut(s)	401, 534
MlyI	GAGTC	2 cut(s)	145, 580
MroI	TCCGGA	1 cut(s)	961
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	3 cut(s)	255, 596, 984
MslI	CAYNNNNRTG	2 cut(s)	598, 993
MspA1I	CMGCKG	1 cut(s)	770
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	3 cut(s)	353, 752, 962
MspR9I	CCNGG	2 cut(s)	354, 752
Mva1269I	GAATGC	1 cut(s)	386
MwoI	GCNNNNNNNGC	3 cut(s)	285, 824, 904
NciI	CCSGG	2 cut(s)	354, 752
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	5 cut(s)	114, 442, 639, 772, 1033
NlaIII	CATG	5 cut(s)	143, 443, 709, 992, 1010
NlaIV	GGNNCC	7 cut(s)	70, 116, 364, 784, 804, 906, 960
NmuCI	GTSAC	4 cut(s)	95, 322, 386, 454
PaeR7I	CTCGAG	1 cut(s)	828
PctI	GAATGC	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	290, 745
PkrI	GCNGC	1 cut(s)	287
PleI	GAGTC	2 cut(s)	144, 579
PpsI	GAGTC	2 cut(s)	144, 579
Ppu21I	YACGTR	1 cut(s)	673
PspN4I	GGNNCC	7 cut(s)	70, 116, 364, 784, 804, 906, 960
PspPI	GGNCC	4 cut(s)	362, 416, 905, 959
PspXI	VCTCGAGB	1 cut(s)	828
PstNI	CAGNNNCTG	2 cut(s)	14, 390
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	4 cut(s)	7, 161, 525, 928
RsaNI	GTAC	4 cut(s)	6, 160, 524, 927
RseI	CAYNNNNRTG	2 cut(s)	598, 993
SaqAI	TTAA	3 cut(s)	255, 596, 984
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	5 cut(s)	114, 442, 639, 772, 1033
Sau96I	GGNCC	4 cut(s)	362, 416, 905, 959
SchI	GAGTC	2 cut(s)	145, 580
ScrFI	CCNGG	2 cut(s)	354, 752
SduI	GDGCHC	1 cut(s)	605
SfaNI	GCATC	3 cut(s)	522, 688, 1000
Sfr274I	CTCGAG	1 cut(s)	828
SinI	GGWCC	3 cut(s)	362, 416, 959
SlaI	CTCGAG	1 cut(s)	828
SmiMI	CAYNNNNRTG	2 cut(s)	598, 993
SmlI	CTYRAG	4 cut(s)	254, 375, 568, 828
SmoI	CTYRAG	4 cut(s)	254, 375, 568, 828
Sse9I	AATT	2 cut(s)	401, 534
SsiI	CCGC	4 cut(s)	493, 501, 770, 1041
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	352, 750
StyI	CCWWGG	2 cut(s)	705, 798
TaaI	ACNGT	4 cut(s)	159, 322, 392, 787
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	2 cut(s)	202, 829
TasI	AATT	2 cut(s)	401, 534
TatI	WGTACW	2 cut(s)	5, 523
TfiI	GAWTC	2 cut(s)	290, 745
Tru1I	TTAA	3 cut(s)	255, 596, 984
Tru9I	TTAA	3 cut(s)	255, 596, 984
TscAI	CASTG	5 cut(s)	30, 281, 343, 391, 905
TseFI	GTSAC	4 cut(s)	95, 322, 386, 454
TseI	GCWGC	1 cut(s)	285
Tsp45I	GTSAC	4 cut(s)	95, 322, 386, 454
TspDTI	ATGAA	5 cut(s)	254, 282, 287, 500, 1005
TspGWI	ACGGA	2 cut(s)	203, 617
TspRI	CASTG	5 cut(s)	30, 281, 343, 391, 905
Vha464I	CTTAAG	1 cut(s)	254
VneI	GTGCAC	1 cut(s)	601
VpaK11BI	GGWCC	3 cut(s)	362, 416, 959
XapI	RAATTY	1 cut(s)	401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	897
XhoI	CTCGAG	1 cut(s)	828
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.