Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8255059.1

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 334

Gene Structure 334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8255059.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

gcaaattttgctcgagctgttgcgtctcttagcaaggcacagaccaagaaagttgcacggttccttccaaacccggaaaggcattggggtccaaagcttagggcaggtcgtcaaatcaccagcaagcacatttctctcttgggtccagaggctgtcaatgaaattcttaaccaggaagaagatggtgaggaacacaatgccaagcgtcaaaagactgaagataatccgccctcaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002940 GO:0003674 GO:0003824 GO:0004809 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM

Protein Analysis

79

Amino Acids

8.77

Weight (kDa)

9.6

Isoelectric Point (pI)

57.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	95
AciI	CCGC	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	4, 162
AcuI	CTGAAG	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	17, 97
AluI	AGCT	2 cut(s)	17, 97
Alw26I	GTCTC	1 cut(s)	30
AlwNI	CAGNNNCTG	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	12
ApoI	RAATTY	2 cut(s)	4, 162
AspS9I	GGNCC	2 cut(s)	89, 143
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	109, 197
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	2 cut(s)	89, 143
AxyI	CCTNAGG	1 cut(s)	232
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	95
Bme1390I	CCNGG	2 cut(s)	74, 173
Bme18I	GGWCC	2 cut(s)	89, 143
BmeT110I	CYCGRG	1 cut(s)	12
BmgT120I	GGNCC	2 cut(s)	89, 143
BmiI	GGNNCC	3 cut(s)	62, 90, 144
BmrFI	CCNGG	2 cut(s)	74, 173
Bpu10I	CCTNAGC	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse21I	CCTNAGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	227
BspLI	GGNNCC	3 cut(s)	62, 90, 144
BspMI	ACCTGC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	3 cut(s)	29, 98, 232
BstMAI	GTCTC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	8
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	72, 171
Bsu36I	CCTNAGG	1 cut(s)	232
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	89, 143
CseI	GACGC	2 cut(s)	12, 194
CviJI	RGCY	3 cut(s)	17, 97, 152
CviKI_1	RGCY	3 cut(s)	17, 97, 152
DdeI	CTNAG	3 cut(s)	29, 98, 232
EciI	GGCGGA	1 cut(s)	216
Eco47I	GGWCC	2 cut(s)	89, 143
Eco57I	CTGAAG	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	30
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	2 cut(s)	12, 194
HindIII	AAGCTT	1 cut(s)	95
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	109, 197
Hpy188III	TCNNGA	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	8
HpyF3I	CTNAG	3 cut(s)	29, 98, 232
LpnPI	CCDG	7 cut(s)	87, 90, 133, 158, 159, 185, 219
MboII	GAAGA	3 cut(s)	188, 191, 230
MluCI	AATT	2 cut(s)	4, 162
MnlI	CCTC	2 cut(s)	142, 181
MseI	TTAA	1 cut(s)	168
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	74, 173
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	8
NciI	CCSGG	1 cut(s)	74
NlaIV	GGNNCC	3 cut(s)	62, 90, 144
PaeR7I	CTCGAG	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	62, 90, 144
PspPI	GGNCC	2 cut(s)	89, 143
PspXI	VCTCGAGB	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	89, 143
ScrFI	CCNGG	2 cut(s)	74, 173
SetI	ASST	4 cut(s)	19, 99, 109, 238
Sfr274I	CTCGAG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	89, 143
SlaI	CTCGAG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	4, 162
SsiI	CCGC	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	72, 171
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	13
TasI	AATT	2 cut(s)	4, 162
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	174
VpaK11BI	GGWCC	2 cut(s)	89, 143
XapI	RAATTY	2 cut(s)	4, 162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XhoI	CTCGAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.